Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 0.0e+00 1106.7 564 100.0
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 0.0e+00 1094.3 564 98.6
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 3.9e-254 881.3 565 78.9
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 1.1e-253 879.8 562 77.8
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 2.5e-253 878.6 559 78.7
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 1.2e-250 869.8 565 77.7
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 4.9e-249 864.4 557 77.6
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 6.4e-249 864.0 557 77.6
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 1.4e-248 862.8 561 77.2
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 1.9e-248 862.4 565 76.6
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 9.2e-248 860.1 564 76.8
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 9.2e-248 860.1 559 77.3
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 1.2e-247 859.8 561 77.4
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 1.6e-247 859.4 562 76.5
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 1.6e-247 859.4 551 77.7
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 4.6e-247 857.8 560 76.2
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 6.0e-247 857.4 559 76.7
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 6.0e-247 857.4 561 76.5
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 1.0e-246 856.7 563 76.6
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 1.7e-246 855.9 564 76.2
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 3.9e-246 854.7 561 76.6
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 6.6e-246 854.0 561 76.3
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 6.6e-246 854.0 558 76.3
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 8.6e-246 853.6 561 76.5
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 1.5e-245 852.8 565 77.2
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 3.3e-245 851.7 561 75.9
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 5.6e-245 850.9 565 75.4
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 1.6e-244 849.4 563 76.0
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 2.1e-244 849.0 561 76.3
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.4e-243 846.3 576 74.5
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 1.8e-243 845.9 563 74.8
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 3.1e-243 845.1 584 73.6
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 5.2e-243 844.3 562 74.7
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.2e-242 843.2 555 76.9
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 2.6e-242 842.0 561 75.8
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 3.4e-242 841.6 561 75.6
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 3.4e-242 841.6 566 74.6
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 4.4e-242 841.3 555 76.8
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 5.8e-242 840.9 565 75.8
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 9.9e-242 840.1 561 75.4
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 4.9e-241 837.8 556 76.1
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 8.4e-241 837.0 629 69.5
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 3.2e-240 835.1 556 75.4
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 5.4e-240 834.3 567 74.3
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 5.4e-240 834.3 562 76.0
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 5.4e-240 834.3 558 74.0
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 7.8e-239 830.5 564 74.5
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 1.5e-237 826.2 558 75.1
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 1.9e-237 825.9 565 74.5
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 2.5e-237 825.5 564 74.3
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 3.3e-237 825.1 602 70.4
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 3.3e-237 825.1 557 73.8
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 4.3e-237 824.7 564 74.1
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 6.2e-236 820.8 558 73.1
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 8.1e-236 820.5 561 72.9
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 8.1e-236 820.5 549 75.2
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 8.1e-236 820.5 565 73.3
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 1.4e-235 819.7 565 73.5
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 2.4e-235 818.9 560 73.0
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 3.1e-235 818.5 557 73.4
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 4.0e-235 818.1 569 73.5
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 9.0e-235 817.0 544 76.5
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 1.5e-234 816.2 561 72.5
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 2.6e-234 815.5 547 76.1
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 1.7e-233 812.8 555 73.7
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 2.9e-233 812.0 600 68.8
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 2.9e-233 812.0 558 72.8
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 4.9e-233 811.2 558 73.1
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 1.1e-232 810.1 565 72.6
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 1.1e-232 810.1 566 73.7
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 1.4e-232 809.7 555 73.3
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 1.4e-232 809.7 565 72.9
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 3.2e-232 808.5 555 72.4
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 7.1e-232 807.4 565 72.4
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 9.3e-232 807.0 562 72.2
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 1.2e-231 806.6 565 72.9
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 1.6e-231 806.2 567 71.8
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 2.1e-231 805.8 558 72.8
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 4.6e-231 804.7 558 72.0
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 7.9e-231 803.9 558 72.0
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 5.1e-230 801.2 565 72.6
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 1.9e-229 799.3 552 72.6
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 3.3e-229 798.5 568 71.8
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 3.3e-229 798.5 561 71.8
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 4.3e-229 798.1 558 71.7
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 4.3e-229 798.1 558 71.7
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 5.6e-229 797.7 552 72.3
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 2.1e-228 795.8 558 71.5
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 2.8e-228 795.4 558 71.3
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 3.7e-228 795.0 552 72.8
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 2.0e-226 789.3 548 72.8
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 5.8e-226 787.7 558 71.5
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 4.9e-225 784.6 561 71.7
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 4.9e-225 784.6 553 73.1
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 1.4e-224 783.1 533 74.1
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 7.1e-224 780.8 540 72.8
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 7.1e-224 780.8 556 71.8
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 9.3e-224 780.4 553 72.7
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 2.7e-223 778.9 555 71.5
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 2.7e-223 778.9 565 70.8
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 4.6e-223 778.1 565 70.8
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 8.7e-222 773.9 559 70.8
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.4e-219 766.5 611 67.1
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 5.3e-219 764.6 557 68.0
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 6.9e-219 764.2 603 66.3
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 1.2e-218 763.5 632 63.3
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 3.4e-218 761.9 546 72.2
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 5.8e-218 761.1 520 73.8
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 1.7e-217 759.6 560 68.8
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 2.5e-216 755.7 563 68.7
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 5.1e-214 748.0 557 69.5
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 4.8e-212 741.5 560 68.0
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 6.3e-212 741.1 557 66.1
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 9.3e-208 727.2 559 65.7
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 1.2e-207 726.9 476 75.8
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 3.6e-207 725.3 559 67.4
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 3.2e-200 702.2 453 77.0
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 4.2e-200 701.8 578 63.5
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 2.7e-199 699.1 564 62.6
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 4.7e-199 698.4 567 65.4
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 1.7e-196 689.9 480 71.9
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 1.7e-193 679.9 505 65.3
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.1e-189 667.2 482 69.5
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 6.1e-183 644.8 547 60.3
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 7.5e-181 637.9 564 58.7
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 7.2e-168 594.7 413 71.9
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 5.0e-161 572.0 367 76.8
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 1.6e-159 567.0 394 71.1
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 1.0e-158 564.3 394 70.6
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 1.2e-157 560.8 394 70.3
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 7.8e-154 548.1 359 77.7
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 2.3e-145 520.0 559 50.1
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 2.1e-138 496.9 533 48.4
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 1.5e-125 454.1 327 70.3
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 1.9e-115 420.6 272 76.1
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 4.8e-111 406.0 273 73.3
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 1.5e-93 347.8 220 76.4
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 1.5e-77 294.7 193 71.5
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 6.5e-76 289.3 198 75.3
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 2.4e-62 244.2 228 59.2
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 2.9e-52 210.7 141 73.8
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 1.8e-46 191.4 151 60.9
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 2.7e-45 187.6 146 64.4
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 2.8e-42 177.6 117 72.6
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 1.3e-39 168.7 186 50.5
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 1.6e-29 135.2 85 81.2
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 6.2e-26 123.2 86 70.9
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 4.1e-22 110.5 83 69.9
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 5.4e-22 110.2 92 55.4
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 7.1e-22 109.8 84 65.5
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 3.0e-20 104.4 96 56.2
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 8.6e-20 102.8 109 50.5
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 7.3e-11 73.2 53 66.0
Pp3c10_16910 Physcomitrium patens HOM05D004765 ORTHO05D315325 5.4e-06 57.0 112 33.0


User provided reference genes

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