Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 3.6e-40 167.9 94 100.0
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 1.6e-16 89.4 81 65.4
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 2.8e-16 88.6 80 68.8
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 3.7e-16 88.2 83 66.3
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 4.8e-16 87.8 83 65.1
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 8.2e-16 87.0 71 74.6
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 8.2e-16 87.0 71 74.6
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 8.2e-16 87.0 75 70.7
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 1.4e-15 86.3 73 71.2
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 1.8e-15 85.9 72 69.4
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 1.8e-15 85.9 76 68.4
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 1.8e-15 85.9 82 63.4
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 2.4e-15 85.5 85 64.7
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 2.4e-15 85.5 76 67.1
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 2.4e-15 85.5 80 63.8
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 9.0e-15 83.6 75 65.3
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 9.0e-15 83.6 75 65.3
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 1.2e-14 83.2 71 70.4
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 1.2e-14 83.2 91 57.1
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.5e-14 82.8 82 63.4
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 2.0e-14 82.4 62 71.0
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 2.6e-14 82.0 85 60.0
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 5.9e-14 80.9 81 59.3
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 7.7e-14 80.5 77 63.6
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 1.0e-13 80.1 93 57.0
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 1.0e-13 80.1 73 67.1
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.3e-13 79.7 86 59.3
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.7e-13 79.3 88 58.0
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 1.7e-13 79.3 88 58.0
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 2.9e-13 78.6 86 59.3
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 2.9e-13 78.6 67 67.2
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 3.8e-13 78.2 71 62.0
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 6.5e-13 77.4 75 66.7
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 6.5e-13 77.4 63 66.7
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 8.5e-13 77.0 80 60.0
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 8.5e-13 77.0 67 68.7
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 8.5e-13 77.0 82 57.3
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 8.5e-13 77.0 85 60.0
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 8.5e-13 77.0 67 65.7
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.1e-12 76.6 77 61.0
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 1.4e-12 76.3 61 70.5
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 1.4e-12 76.3 96 54.2
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 1.4e-12 76.3 68 60.3
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.9e-12 75.9 64 68.8
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 2.5e-12 75.5 96 54.2
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 2.5e-12 75.5 75 64.0
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.5e-12 75.5 84 59.5
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 2.5e-12 75.5 75 62.7
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 3.2e-12 75.1 62 64.5
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 3.2e-12 75.1 91 57.1
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 3.2e-12 75.1 81 54.3
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 3.2e-12 75.1 82 57.3
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 4.2e-12 74.7 87 54.0
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 4.2e-12 74.7 66 68.2
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 4.2e-12 74.7 64 67.2
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 4.2e-12 74.7 76 63.2
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 4.2e-12 74.7 87 52.9
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 7.2e-12 73.9 75 62.7
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 1.2e-11 73.2 70 64.3
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 1.2e-11 73.2 63 66.7
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 1.2e-11 73.2 63 66.7
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 1.6e-11 72.8 75 61.3
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 1.6e-11 72.8 65 66.2
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 1.6e-11 72.8 75 65.3
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 1.6e-11 72.8 78 59.0
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 2.7e-11 72.0 66 63.6
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 2.7e-11 72.0 77 58.4
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 3.6e-11 71.6 70 60.0
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 3.6e-11 71.6 82 53.7
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 3.6e-11 71.6 69 59.4
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 3.6e-11 71.6 65 66.2
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 3.6e-11 71.6 85 52.9
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 4.6e-11 71.2 79 58.2
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 6.1e-11 70.9 76 56.6
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 7.9e-11 70.5 65 66.2
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 7.9e-11 70.5 77 58.4
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 7.9e-11 70.5 78 55.1
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 7.9e-11 70.5 74 60.8
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 7.9e-11 70.5 65 66.2
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.0e-10 70.1 63 66.7
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 1.0e-10 70.1 68 60.3
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 1.0e-10 70.1 73 60.3
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 1.4e-10 69.7 76 56.6
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 1.4e-10 69.7 77 54.5
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 1.4e-10 69.7 76 55.3
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 1.4e-10 69.7 84 52.4
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 1.8e-10 69.3 66 65.2
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 3.9e-10 68.2 66 59.1
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 3.9e-10 68.2 68 61.8
MBI19_g17416_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 8.8e-10 67.0 81 50.6
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 8.8e-10 67.0 63 61.9
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 1.1e-09 66.6 73 57.5
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 1.1e-09 66.6 73 58.9
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 2.0e-09 65.9 79 53.2
Ah.06g190970 Amaranthus hybridus HOM05D004722 ORTHO05D005453 2.0e-09 65.9 74 51.4
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 2.0e-09 65.9 86 52.3
MBI19_g17417_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 2.0e-09 65.9 68 52.9
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 3.3e-09 65.1 75 52.0
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 3.3e-09 65.1 65 61.5
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 3.3e-09 65.1 66 59.1
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 4.3e-09 64.7 66 56.1
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 4.3e-09 64.7 66 56.1
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 4.3e-09 64.7 66 56.1
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 4.3e-09 64.7 80 56.2
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 4.3e-09 64.7 66 62.1
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 4.3e-09 64.7 67 55.2
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 5.7e-09 64.3 79 53.2
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 5.7e-09 64.3 62 62.9
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 7.4e-09 63.9 65 58.5
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 7.4e-09 63.9 65 58.5
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 7.4e-09 63.9 65 58.5
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 7.4e-09 63.9 65 58.5
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 7.4e-09 63.9 65 58.5
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 9.7e-09 63.5 72 51.4
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 1.3e-08 63.2 56 67.9
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 1.7e-08 62.8 72 52.8
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 1.7e-08 62.8 78 53.8
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 1.7e-08 62.8 61 60.7
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 1.7e-08 62.8 68 54.4
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 2.2e-08 62.4 74 58.1
EL10Ac4g09616 Beta vulgaris HOM05D004722 ORTHO05D005453 2.8e-08 62.0 67 52.2
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 2.8e-08 62.0 67 56.7
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 2.8e-08 62.0 61 60.7
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 3.7e-08 61.6 60 66.7
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 3.7e-08 61.6 64 57.8
ATR0598G063 Amborella trichopoda HOM05D004722 ORTHO05D005453 4.8e-08 61.2 70 58.6
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 4.8e-08 61.2 73 53.4
FvH4_3g44500 Fragaria vesca HOM05D004722 ORTHO05D005453 6.3e-08 60.8 78 53.8
FAN11G3093 Fragaria x ananassa HOM05D004722 ORTHO05D005453 6.3e-08 60.8 78 53.8
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 6.3e-08 60.8 76 55.3
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 6.3e-08 60.8 75 58.7
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 8.2e-08 60.5 73 56.2
EL10Ac4g09614 Beta vulgaris HOM05D004722 ORTHO05D005453 8.2e-08 60.5 62 50.0
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 8.2e-08 60.5 76 51.3
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 8.2e-08 60.5 74 55.4
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 8.2e-08 60.5 65 58.5
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 8.2e-08 60.5 71 54.9
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 8.2e-08 60.5 69 52.2
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 1.1e-07 60.1 76 51.3
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 1.1e-07 60.1 76 51.3
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 1.1e-07 60.1 66 51.5
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 1.4e-07 59.7 63 55.6
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 2.4e-07 58.9 65 55.4
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 2.4e-07 58.9 62 61.3
Gorai.011G212200 Gossypium raimondii HOM05D004722 ORTHO05D005453 3.1e-07 58.5 69 58.0
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 9.1e-07 57.0 57 59.6
Os09g0446700 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 9.1e-07 57.0 71 52.1
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 1.2e-06 56.6 68 51.5
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 3.4e-06 55.1 61 54.1
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 5.9e-06 54.3 80 43.8


User provided reference genes

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