Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G1222 Papaver somniferum HOM05D006596 ORTHO05D008497 3.9e-137 491.5 258 100.0
PSO339G5577 Papaver somniferum HOM05D006596 ORTHO05D008497 2.1e-82 309.7 194 84.5
PSO384G2212 Papaver somniferum HOM05D006596 ORTHO05D008497 7.6e-80 301.2 194 82.0
TAR636G1255 Trochodendron aralioides HOM05D006596 ORTHO05D008497 4.2e-62 242.3 202 62.9
CsaV3_3G038200 Cucumis sativus L. HOM05D006596 ORTHO05D008497 2.7e-61 239.6 231 55.4
MELO3C009563.2 Cucumis melo HOM05D006596 ORTHO05D008497 3.9e-60 235.7 231 54.5
Aqoxy1G00603 Aquilegia oxysepala HOM05D006596 ORTHO05D008497 1.1e-57 227.6 194 61.3
TWI74G0317 Tripterygium wilfordii HOM05D006596 ORTHO05D008497 2.6e-56 223.0 222 53.6
Lj1P1058T24 Lonicera japonica HOM05D006596 ORTHO05D008497 5.8e-56 221.9 225 53.3
MBI05_g00435_MAGBIO Magnolia biondii HOM05D006596 ORTHO05D008497 1.7e-55 220.3 231 55.8
Hma1.2p1_0969F.1_g242592 Hydrangea macrophylla HOM05D006596 ORTHO05D008497 2.9e-55 219.5 196 58.7
Hma1.2p1_0969F.1_g242594 Hydrangea macrophylla HOM05D006596 ORTHO05D008497 2.9e-55 219.5 196 58.7
Dinv11886 Davidia involucrata HOM05D006596 ORTHO05D008497 1.4e-54 217.2 196 57.7
ECA238G2420 Erigeron canadensis HOM05D006596 ORTHO05D008497 9.3e-54 214.5 222 51.4
Nn4g26016 Nelumbo nucifera HOM05D006596 ORTHO05D008497 6.7e-52 208.4 193 54.9
CAN.G911.26 Capsicum annuum HOM05D006596 ORTHO05D008497 8.7e-52 208.0 231 48.1
HanXRQChr14g0453291 Helianthus annuus HOM05D006596 ORTHO05D008497 3.3e-51 206.1 224 49.6
Lj1g0010915 Lotus japonicus HOM05D006596 ORTHO05D008497 5.7e-51 205.3 224 52.7
Potri.006G200800 Populus trichocarpa HOM05D006596 ORTHO05D008497 9.6e-51 204.5 198 55.1
Ciclev10010964m.g Citrus clementina HOM05D006596 ORTHO05D008497 1.6e-50 203.8 197 52.3
Sc09g0001040 Simmondsia chinensis HOM05D006596 ORTHO05D008497 1.6e-50 203.8 194 54.6
FvH4_6g20810 Fragaria vesca HOM05D006596 ORTHO05D008497 3.7e-50 202.6 199 55.3
FAN14G5569 Fragaria x ananassa HOM05D006596 ORTHO05D008497 3.7e-50 202.6 199 55.3
EL10Ac4g10108 Beta vulgaris HOM05D006596 ORTHO05D008497 4.8e-50 202.2 202 52.5
CANSAT64G0970 Cannabis sativa HOM05D006596 ORTHO05D008497 4.8e-50 202.2 204 53.4
Thecc.05G108600 Theobroma cacao HOM05D006596 ORTHO05D008497 1.4e-49 200.7 197 53.8
Solyc01g006850.1 Solanum lycopersicum HOM05D006596 ORTHO05D008497 1.8e-49 200.3 204 51.5
Gohir.D11G332300 Gossypium hirsutum HOM05D006596 ORTHO05D008497 3.1e-49 199.5 202 53.0
Gorai.007G363200 Gossypium raimondii HOM05D006596 ORTHO05D008497 3.1e-49 199.5 202 53.0
Sed0007804 Sechium edule HOM05D006596 ORTHO05D008497 3.1e-49 199.5 197 52.8
MD12G1044100 Malus domestica HOM05D006596 ORTHO05D008497 4.1e-49 199.1 193 53.9
Gohir.A11G315300 Gossypium hirsutum HOM05D006596 ORTHO05D008497 5.3e-49 198.7 202 53.5
Sopen01g002840 Solanum pennellii HOM05D006596 ORTHO05D008497 5.3e-49 198.7 204 51.0
PGSC0003DMG400021371 Solanum tuberosum HOM05D006596 ORTHO05D008497 1.2e-48 197.6 204 51.0
FAN02G0500 Fragaria x ananassa HOM05D006596 ORTHO05D008497 4.5e-48 195.7 190 55.3
ClCG10G018100 Citrullus lanatus HOM05D006596 ORTHO05D008497 5.9e-48 195.3 193 52.8
Manes.09G043000 Manihot esculenta HOM05D006596 ORTHO05D008497 7.6e-48 194.9 192 54.2
DCAR_016913 Daucus carota HOM05D006596 ORTHO05D008497 1.7e-47 193.7 197 53.3
Haze_20109 Corylus avellana HOM05D006596 ORTHO05D008497 2.2e-47 193.4 225 53.3
Ah.06g194670 Amaranthus hybridus HOM05D006596 ORTHO05D008497 2.9e-47 193.0 196 50.5
QL07p026858 Quercus lobata HOM05D006596 ORTHO05D008497 2.5e-46 189.9 195 50.8
Eucgr.A02555 Eucalyptus grandis HOM05D006596 ORTHO05D008497 3.2e-46 189.5 195 52.3
C09p70390 Brassica napus HOM05D006596 ORTHO05D008497 1.2e-45 187.6 224 46.4
VMungo0720G1474 Vigna mungo HOM05D006596 ORTHO05D008497 1.2e-45 187.6 196 49.5
Cfa020083 Carpinus fangiana HOM05D006596 ORTHO05D008497 1.6e-45 187.2 223 52.0
AUR62006552 Chenopodium quinoa HOM05D006179 ORTHO05D008370 1.6e-45 187.2 200 48.5
RcHm_v2.0_Chr3g0476881 Rosa chinensis HOM05D006596 ORTHO05D008497 1.6e-45 187.2 202 49.0
Migut.O00313 Erythranthe guttata HOM05D006596 ORTHO05D008497 3.5e-45 186.0 195 49.2
Phvul.007G266200 Phaseolus vulgaris HOM05D006596 ORTHO05D008497 3.5e-45 186.0 197 48.7
Glyma.02G192800 Glycine max HOM05D006596 ORTHO05D008497 4.6e-45 185.7 192 50.0
PGR004G2850 Punica granatum HOM05D006596 ORTHO05D008497 1.3e-44 184.1 195 48.2
CDE07G1133 Ceratophyllum demersum HOM05D006596 ORTHO05D008497 1.8e-44 183.7 187 52.4
COL.COLO4_29516 Corchorus olitorius HOM05D006596 ORTHO05D008497 1.1e-43 181.0 196 50.0
TPR.G40248 Trifolium pratense HOM05D006596 ORTHO05D008497 1.9e-43 180.3 198 46.0
HPP92_016090 Vanilla planifolia HOM05D006596 ORTHO05D008497 1.9e-43 180.3 203 45.3
Cc06_g06860 Coffea canephora HOM05D006596 ORTHO05D008497 2.5e-43 179.9 197 49.2
CSS0017956 Camellia sinensis var. sinensis HOM05D006596 ORTHO05D008497 5.7e-43 178.7 247 43.3
SalBow1G1508 Salvia bowleyana HOM05D006596 ORTHO05D008497 7.4e-43 178.3 192 48.4
Prupe.7G091000 Prunus persica HOM05D006596 ORTHO05D008497 9.7e-43 177.9 203 48.8
Medtr1g055295 Medicago truncatula HOM05D006596 ORTHO05D008497 2.8e-42 176.4 193 46.1
Thhalv10012543m.g Eutrema salsugineum HOM05D006596 ORTHO05D008497 3.7e-42 176.0 196 49.5
Lj5g0008032 Lotus japonicus HOM05D006596 ORTHO05D008497 3.7e-42 176.0 224 46.9
Cpa.g.sc104.1 Carica papaya HOM05D006596 ORTHO05D008497 1.4e-41 174.1 157 54.1
Aa31sc52G230 Aethionema arabicum HOM05D006596 ORTHO05D008497 6.9e-41 171.8 198 47.0
Lalb_Chr02g0154271 Lupinus albus HOM05D006596 ORTHO05D008497 7.7e-40 168.3 198 45.5
Psat6g128160 Pisum sativum HOM05D006596 ORTHO05D008497 7.7e-40 168.3 191 44.5
Sp6g36450 Schrenkiella parvula HOM05D006596 ORTHO05D008497 1.0e-39 167.9 196 47.4
ATR0697G239 Amborella trichopoda HOM05D006596 ORTHO05D008497 1.4e-38 164.1 173 48.0
Duzib093G1929 Durio zibethinus HOM05D006596 ORTHO05D008497 3.2e-38 162.9 205 46.8
Rhsim03G0062300 Rhododendron simsii HOM05D006596 ORTHO05D008497 2.1e-37 160.2 189 46.0
AL6G16490 Arabidopsis lyrata HOM05D006596 ORTHO05D008497 6.1e-37 158.7 198 46.0
A10p29980 Brassica napus HOM05D006596 ORTHO05D008497 7.9e-37 158.3 198 46.0
Carub.0006s0529 Capsella rubella HOM05D006596 ORTHO05D008497 1.4e-36 157.5 197 45.7
Sabra06G0154500 Salix brachista HOM05D006596 ORTHO05D008497 1.8e-36 157.1 198 46.5
BraA10t45038Z Brassica rapa HOM05D006596 ORTHO05D008497 3.9e-36 156.0 198 45.5
CARHR207160 Cardamine hirsuta HOM05D006596 ORTHO05D008497 3.9e-36 156.0 196 45.4
BolC9t59785H Brassica oleracea HOM05D006596 ORTHO05D008497 1.5e-35 154.1 198 45.5
Ca_11668_v3 Cicer arietinum L. HOM05D006596 ORTHO05D008497 1.7e-34 150.6 188 42.6
Nitab4.5_0009788g0010 Nicotiana tabacum HOM05D006596 ORTHO05D008497 1.7e-34 150.6 204 42.6
CiPaw.09G023000 Carya illinoinensis HOM05D006596 ORTHO05D008497 2.8e-34 149.8 197 42.1
Peaxi162Scf00675g00062 Petunia axillaris HOM05D006596 ORTHO05D008497 2.8e-34 149.8 204 42.2
AT5G06400 Arabidopsis thaliana HOM05D006596 ORTHO05D008497 1.2e-32 144.4 196 43.9
THA.LOC104816628 Tarenaya hassleriana HOM05D006596 ORTHO05D008497 1.5e-32 144.1 190 43.2
Actinidia03863 Actinidia chinensis HOM05D006596 ORTHO05D008497 2.6e-32 143.3 184 42.9
Actinidia03971 Actinidia chinensis HOM05D006596 ORTHO05D008497 2.6e-32 143.3 184 42.9
MSTRG.989 Avicennia marina HOM05D006596 ORTHO05D008497 3.4e-32 142.9 195 42.1
Oeu063088.1 Olea europaea HOM05D006596 ORTHO05D008497 2.9e-31 139.8 152 46.1
Dinv11883 Davidia involucrata HOM05D006596 ORTHO05D008497 5.1e-28 129.0 132 54.5
SEGI_06407 Sequoiadendron giganteum HOM05D006596 ORTHO05D008497 3.7e-26 122.9 134 44.0
Zm00001eb253100 Zea mays HOM05D006596 ORTHO05D008497 4.1e-25 119.4 201 37.3
TPR.G39953 Trifolium pratense HOM05D006596 ORTHO05D008497 8.2e-18 95.1 127 40.2
Rhsim03G0063400 Rhododendron simsii HOM05D001372 ORTHO05D002010 1.7e-15 87.4 107 44.9
Dinv24080 Davidia involucrata HOM05D006596 ORTHO05D008497 3.0e-12 76.6 168 32.7
Os12g0456100 Oryza sativa ssp. japonica HOM05D006596 ORTHO05D008497 4.0e-12 76.3 111 41.4
Prupe.6G077700 Prunus persica HOM05D006354 ORTHO05D007773 3.8e-07 59.7 216 24.1
EL10Ac6g14755 Beta vulgaris HOM05D000249 ORTHO05D000206 6.5e-07 58.9 132 33.3
BcaC01g01383 Brassica carinata HOM05D002453 ORTHO05D008746 3.2e-06 56.6 125 28.0
A08p01630 Brassica napus HOM05D002453 ORTHO05D008746 3.2e-06 56.6 125 28.8
C03p91440 Brassica napus HOM05D002453 ORTHO05D008746 3.2e-06 56.6 125 28.0
BolC3t21463H Brassica oleracea HOM05D002753 ORTHO05D003097 3.2e-06 56.6 125 28.0
BraA08t32216Z Brassica rapa HOM05D002453 ORTHO05D008746 3.2e-06 56.6 125 28.8
A09p66280 Brassica napus HOM05D006354 ORTHO05D007773 5.5e-06 55.8 222 24.8
Nitab4.5_0002194g0020 Nicotiana tabacum HOM05D000001 ORTHO05D009891 7.2e-06 55.5 126 33.3
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 7.2e-06 55.5 165 27.3


User provided reference genes

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