Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 8.6e-236 820.1 458 100.0
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 1.1e-233 813.1 458 99.1
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 5.9e-184 647.9 463 80.3
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 2.9e-183 645.6 461 80.0
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 2.5e-182 642.5 459 79.5
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 3.2e-182 642.1 459 79.3
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 7.4e-179 630.9 460 79.1
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 1.6e-178 629.8 459 79.7
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 1.3e-175 620.2 460 77.2
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 1.7e-175 619.8 460 77.2
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 2.5e-174 615.9 460 77.0
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 2.5e-174 615.9 460 74.6
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 5.5e-174 614.8 460 76.7
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 3.6e-173 612.1 460 77.2
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 6.1e-173 611.3 460 75.7
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 1.0e-172 610.5 460 76.7
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 3.0e-172 609.0 460 77.2
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 8.8e-172 607.4 461 74.8
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 1.1e-171 607.1 460 77.2
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 1.5e-171 606.7 461 74.6
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 2.6e-171 605.9 460 74.6
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 4.4e-171 605.1 460 78.0
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 9.7e-171 604.0 460 75.2
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 1.7e-170 603.2 460 76.1
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 1.7e-170 603.2 460 77.6
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 4.8e-170 601.7 460 76.7
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 2.4e-169 599.4 462 75.3
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 4.1e-169 598.6 459 75.2
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 2.0e-168 596.3 459 75.8
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 3.4e-168 595.5 458 74.5
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 5.9e-168 594.7 460 73.5
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 1.3e-167 593.6 462 68.2
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 2.9e-167 592.4 461 75.1
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 3.8e-167 592.0 461 75.3
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 1.1e-166 590.5 461 75.5
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 9.4e-166 587.4 459 74.3
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 1.2e-165 587.0 458 73.4
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 1.2e-165 587.0 460 74.8
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 1.6e-165 586.6 459 74.3
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 7.9e-165 584.3 457 73.5
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 1.0e-164 583.9 460 73.9
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 1.4e-164 583.6 459 74.1
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 1.8e-164 583.2 459 73.9
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 5.2e-164 581.6 461 74.8
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 5.2e-164 581.6 459 73.6
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 8.8e-164 580.9 460 73.9
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 3.3e-163 578.9 461 74.8
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 4.4e-163 578.6 464 73.7
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 7.4e-163 577.8 460 74.6
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 7.4e-163 577.8 455 74.7
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 2.2e-162 576.2 456 73.0
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 2.2e-162 576.2 461 73.8
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 2.8e-162 575.9 460 73.3
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 2.8e-162 575.9 460 73.5
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 1.1e-161 573.9 459 73.2
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 1.1e-161 573.9 504 63.9
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 3.1e-161 572.4 439 77.0
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 3.1e-161 572.4 460 66.7
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 5.3e-161 571.6 455 74.3
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 7.0e-161 571.2 466 74.2
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 1.2e-160 570.5 461 66.8
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 1.2e-160 570.5 461 66.8
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 1.2e-160 570.5 466 73.8
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 1.2e-160 570.5 460 71.7
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 2.0e-160 569.7 489 69.9
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 4.5e-160 568.5 460 71.1
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 5.9e-160 568.2 459 71.2
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 5.9e-160 568.2 460 73.5
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 1.3e-159 567.0 459 70.2
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 1.7e-159 566.6 460 72.6
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 1.9e-158 563.1 473 71.0
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 1.2e-157 560.5 460 72.0
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 1.6e-157 560.1 460 72.0
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.6e-157 560.1 460 71.3
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 2.1e-157 559.7 460 71.3
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 2.7e-157 559.3 460 71.1
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 4.0e-156 555.4 460 70.9
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 2.6e-155 552.7 481 67.4
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 1.3e-154 550.4 459 71.0
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 2.2e-154 549.7 462 70.3
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 3.7e-154 548.9 459 70.2
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 5.3e-153 545.0 457 70.9
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 1.6e-152 543.5 467 69.6
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 1.6e-152 543.5 460 62.8
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 3.5e-152 542.3 461 69.2
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 1.3e-151 540.4 457 70.5
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 1.7e-151 540.0 457 70.5
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 2.2e-151 539.7 457 70.5
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 8.0e-149 531.2 464 63.4
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 1.2e-147 527.3 389 69.9
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 1.5e-147 526.9 387 69.5
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 7.5e-147 524.6 460 69.1
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.3e-146 523.9 460 69.3
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 2.2e-146 523.1 460 67.8
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 6.3e-146 521.5 460 67.6
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.8e-145 520.0 460 68.0
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 4.1e-145 518.8 387 68.7
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.0e-143 514.2 460 67.4
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 2.9e-143 512.7 549 60.7
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 9.5e-142 507.7 460 65.9
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 1.6e-141 506.9 389 68.1
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 2.8e-141 506.1 462 66.7
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 3.4e-139 499.2 457 67.0
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 7.5e-139 498.0 460 65.9
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 2.2e-138 496.5 389 67.4
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 9.2e-137 491.1 460 65.2
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 5.6e-134 481.9 380 76.1
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 7.3e-134 481.5 496 61.7
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 6.4e-130 468.4 456 61.2
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 1.1e-129 467.6 382 73.0
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 2.4e-129 466.5 459 56.6
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 1.2e-125 454.1 456 63.8
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 8.3e-114 414.8 463 54.0
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 1.9e-113 413.7 456 57.2
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 7.8e-112 408.3 365 62.5
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 7.6e-107 391.7 298 70.8
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 5.1e-103 379.0 457 51.9
Dinv24610 Davidia involucrata HOM05D005230 ORTHO05D006506 6.9e-84 315.5 317 58.0
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 1.2e-75 288.1 292 65.8
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 3.1e-68 263.5 456 44.1
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 7.2e-65 252.3 393 39.4
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.0e-58 231.9 242 54.1
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 4.4e-54 216.5 510 39.4
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 1.8e-52 211.1 188 63.3
MCO03G336 Micromonas commoda HOM05D005230 ORTHO05D006506 2.0e-46 191.0 392 32.7
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 2.8e-45 187.2 161 63.4
CSS0018745 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 8.2e-45 185.7 122 77.0
Gohir.A05G264150 Gossypium hirsutum HOM05D005230 ORTHO05D006506 9.4e-41 172.2 123 69.9
PRCOL_00006600 Prasinoderma coloniale HOM05D005230 ORTHO05D006506 1.3e-37 161.8 508 34.3
FvH4_4g06340 Fragaria vesca HOM05D005230 ORTHO05D006506 3.5e-35 153.7 121 66.9
Mapoly0070s0046 Marchantia polymorpha HOM05D005230 ORTHO05D006506 3.6e-32 143.7 154 54.5
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 7.5e-30 136.0 135 57.0
BcaC04g24210 Brassica carinata HOM05D005230 ORTHO05D006506 1.2e-19 102.1 66 80.3
Sed0001059 Sechium edule HOM05D005230 ORTHO05D006506 5.9e-19 99.8 98 86.7
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 6.6e-18 96.3 220 34.5
Nn7g36957 Nelumbo nucifera HOM05D005230 ORTHO05D006506 2.5e-17 94.4 55 87.3
VMungo1309G2461 Vigna mungo HOM05D002467 ORTHO05D013374 1.2e-16 92.0 84 58.3
Psat2g003760 Pisum sativum HOM05D005230 ORTHO05D006506 3.6e-16 90.5 90 58.9
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 4.9e-13 80.1 59 69.5
Psat0s3158g0040 Pisum sativum HOM05D005230 ORTHO05D320643 3.0e-10 70.9 58 60.3
TAR623G0477 Trochodendron aralioides HOM05D005230 ORTHO05D006506 1.5e-09 68.6 97 45.4
Dinv24611 Davidia involucrata HOM05D005230 ORTHO05D006506 9.5e-09 65.9 49 75.5
Psat4g142760 Pisum sativum HOM05D000493 ORTHO05D004446 9.5e-09 65.9 59 55.9
Psat4g142680 Pisum sativum HOM05D000493 ORTHO05D001638 2.8e-08 64.3 59 55.9
Psat0s472g0120 Pisum sativum HOM05D005230 ORTHO05D023087 6.2e-08 63.2 60 56.7
Psat2g028360 Pisum sativum HOM05D005230 ORTHO05D006506 1.4e-07 62.0 106 40.6
Peaxi162Scf00225g00424 Petunia axillaris HOM05D004145 ORTHO05D004879 5.2e-07 60.1 407 20.4
MELO3C033360.2 Cucumis melo HOM05D005230 ORTHO05D013374 6.8e-07 59.7 112 42.0
THA.LOC104805832 Tarenaya hassleriana HOM05D004145 ORTHO05D004879 6.8e-07 59.7 416 21.6
PSO541G4045 Papaver somniferum HOM05D004145 ORTHO05D004879 8.9e-07 59.3 399 22.6
PGR004G0092 Punica granatum HOM05D004145 ORTHO05D004879 2.0e-06 58.2 410 21.0
PRCOL_00001177 Prasinoderma coloniale HOM05D004145 ORTHO05D004879 2.6e-06 57.8 235 24.7
AL7G36090 Arabidopsis lyrata HOM05D004145 ORTHO05D004879 4.4e-06 57.0 245 24.1
MCO16G505 Micromonas commoda HOM05D004145 ORTHO05D004879 7.5e-06 56.2 252 25.0
Nitab4.5_0010351g0020 Nicotiana tabacum HOM05D004145 ORTHO05D004879 7.5e-06 56.2 407 20.6
SMO356G0330 Selaginella moellendorffii HOM05D004145 ORTHO05D004879 7.5e-06 56.2 251 22.7
CDE03G0316 Ceratophyllum demersum HOM05D002357 ORTHO05D002676 9.8e-06 55.8 147 25.9


User provided reference genes

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