Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G0950 Papaver somniferum HOM05D003801 ORTHO05D004812 1.5e-173 612.8 319 100.0
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 2.2e-89 333.2 219 77.6
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 2.9e-89 332.8 219 77.2
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 3.7e-76 289.3 222 64.9
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 3.4e-74 282.7 219 64.8
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 3.4e-74 282.7 219 63.5
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 7.2e-72 275.0 219 61.6
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 3.9e-70 269.2 219 59.8
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 2.0e-69 266.9 219 59.4
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 4.4e-69 265.8 219 59.8
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 9.7e-69 264.6 219 60.3
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 1.7e-68 263.8 219 63.0
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 3.7e-68 262.7 222 57.2
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 1.8e-67 260.4 222 57.2
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 1.8e-67 260.4 219 58.4
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 5.3e-67 258.8 219 58.4
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 5.3e-67 258.8 219 58.4
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 1.2e-66 257.7 219 57.5
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 1.6e-66 257.3 219 56.6
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.6e-66 257.3 219 58.9
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 2.0e-66 256.9 219 56.2
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 2.0e-66 256.9 219 56.6
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 2.6e-66 256.5 219 56.2
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 4.5e-66 255.8 219 56.2
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 4.5e-66 255.8 222 56.3
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 4.5e-66 255.8 219 57.1
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 5.9e-66 255.4 219 59.4
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 7.7e-66 255.0 219 58.0
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 1.0e-65 254.6 219 59.4
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 1.0e-65 254.6 219 56.6
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 1.3e-65 254.2 219 56.6
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 1.3e-65 254.2 219 56.2
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 1.7e-65 253.8 219 56.6
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 1.7e-65 253.8 175 74.3
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 1.7e-65 253.8 221 55.7
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 1.7e-65 253.8 221 55.7
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 2.2e-65 253.4 219 58.0
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 2.9e-65 253.1 219 55.3
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 2.9e-65 253.1 219 59.4
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 3.8e-65 252.7 219 55.3
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 3.8e-65 252.7 219 56.6
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 5.0e-65 252.3 219 54.8
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 6.5e-65 251.9 219 56.2
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 6.5e-65 251.9 219 57.5
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 6.5e-65 251.9 219 55.3
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 8.5e-65 251.5 219 55.7
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 8.5e-65 251.5 219 54.8
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 1.1e-64 251.1 219 56.2
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 1.9e-64 250.4 219 56.2
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 1.9e-64 250.4 219 55.7
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 2.5e-64 250.0 222 55.4
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 2.5e-64 250.0 219 54.8
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 2.5e-64 250.0 219 55.3
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 2.5e-64 250.0 219 55.3
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 2.5e-64 250.0 219 56.6
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 4.2e-64 249.2 219 56.2
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 5.5e-64 248.8 219 55.3
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 9.4e-64 248.1 219 55.3
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 1.6e-63 247.3 219 55.7
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 1.6e-63 247.3 219 54.8
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 2.1e-63 246.9 245 51.0
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 2.1e-63 246.9 219 54.8
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 2.7e-63 246.5 222 55.4
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 3.6e-63 246.1 222 55.0
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 4.7e-63 245.7 219 54.8
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 4.7e-63 245.7 222 54.5
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 6.1e-63 245.4 219 54.3
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 8.0e-63 245.0 251 50.2
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 1.0e-62 244.6 219 53.9
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 1.0e-62 244.6 219 55.3
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 1.4e-62 244.2 219 56.6
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 1.4e-62 244.2 216 55.6
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 1.8e-62 243.8 221 56.6
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 1.8e-62 243.8 219 53.9
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 1.8e-62 243.8 222 54.5
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 8.8e-62 241.5 219 54.8
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 1.1e-61 241.1 219 54.3
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 1.5e-61 240.7 219 55.3
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 1.5e-61 240.7 219 53.9
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 2.6e-61 240.0 219 53.4
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 3.3e-61 239.6 219 53.4
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 9.7e-61 238.0 219 54.3
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 9.7e-61 238.0 219 52.5
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 9.7e-61 238.0 204 56.9
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 1.3e-60 237.7 219 53.0
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 1.3e-60 237.7 219 53.0
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 2.2e-60 236.9 219 54.3
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 3.7e-60 236.1 245 50.6
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 1.4e-59 234.2 219 53.4
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 1.8e-59 233.8 219 53.0
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 3.1e-59 233.0 219 52.1
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 3.1e-59 233.0 219 52.5
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 3.1e-59 233.0 219 53.0
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 9.1e-59 231.5 219 52.5
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 7.7e-58 228.4 220 51.4
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 3.8e-57 226.1 241 49.4
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 3.8e-57 226.1 241 49.4
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 1.5e-56 224.2 219 50.7
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 2.5e-56 223.4 219 50.7
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 2.5e-56 223.4 219 50.7
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 3.2e-56 223.0 219 50.2
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 4.2e-56 222.6 219 53.4
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 5.5e-56 222.2 222 49.5
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 5.5e-56 222.2 222 49.5
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 7.2e-56 221.9 216 50.0
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 9.4e-56 221.5 222 49.1
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 1.6e-55 220.7 219 50.2
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 1.6e-55 220.7 219 49.8
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 2.1e-55 220.3 219 49.3
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 2.1e-55 220.3 219 50.2
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 2.1e-55 220.3 219 50.2
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 4.7e-55 219.2 219 50.2
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 8.0e-55 218.4 241 49.0
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 1.8e-54 217.2 237 47.7
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 8.8e-54 214.9 284 40.8
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 8.8e-54 214.9 219 48.9
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 1.2e-53 214.5 241 48.1
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 4.4e-53 212.6 187 54.5
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 2.2e-52 210.3 222 50.0
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 8.3e-52 208.4 245 44.5
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 1.1e-51 208.0 222 45.5
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 4.7e-47 192.6 219 48.4
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 5.2e-46 189.1 219 43.8
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 4.9e-44 182.6 219 41.1
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 8.6e-41 171.8 228 42.1
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 1.8e-38 164.1 219 39.7
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 1.2e-37 161.4 251 40.6
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 2.0e-37 160.6 168 46.4
Os10g0492300 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 2.6e-37 160.2 180 47.8
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 1.1e-35 154.8 183 42.1
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 4.3e-32 142.9 252 36.5
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 3.3e-24 116.7 114 50.0
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 2.1e-23 114.0 208 36.1
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 2.1e-23 114.0 200 33.0
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 2.2e-20 104.0 87 57.5
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 2.9e-20 103.6 105 47.6
SHI19242 Sapria himalayana HOM05D003801 ORTHO05D004812 1.1e-19 101.7 118 40.7
CDE07G0490 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 3.3e-16 90.1 119 43.7
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 4.3e-16 89.7 99 46.5
CSS0035288 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 9.5e-16 88.6 69 60.9
TAR629G1141 Trochodendron aralioides HOM05D000566 ORTHO05D000686 9.5e-16 88.6 67 64.2
HPP92_014542 Vanilla planifolia HOM05D003801 ORTHO05D004812 1.6e-15 87.8 69 60.9
Lj6A615T90 Lonicera japonica HOM05D003801 ORTHO05D004812 4.0e-14 83.2 74 58.1
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 3.4e-13 80.1 98 43.9
CANSAT80G1859 Cannabis sativa HOM05D003801 ORTHO05D004812 9.9e-13 78.6 69 55.1
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 2.1e-10 70.9 222 25.7
Actinidia23184 Actinidia chinensis HOM05D003801 ORTHO05D004812 3.0e-09 67.0 204 30.4
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 6.6e-09 65.9 49 63.3
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 8.1e-07 58.9 154 32.5


User provided reference genes

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