Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G0783 Papaver somniferum HOM05D006297 ORTHO05D007873 1.4e-183 646.7 484 100.0
PSO513G0159 Papaver somniferum HOM05D006297 ORTHO05D007873 2.7e-163 579.3 491 91.9
Sc12g0001260 Simmondsia chinensis HOM05D006297 ORTHO05D007873 5.1e-29 133.3 406 31.3
PGR119G2469 Punica granatum HOM05D006297 ORTHO05D007873 6.7e-29 132.9 431 29.7
Potri.009G035300 Populus trichocarpa HOM05D006297 ORTHO05D007873 1.1e-28 132.1 436 28.7
Actinidia33772 Actinidia chinensis HOM05D006297 ORTHO05D007873 1.5e-28 131.7 427 30.4
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 1.9e-28 131.3 379 29.6
Sabra09G0025100 Salix brachista HOM05D006297 ORTHO05D010418 5.7e-28 129.8 418 28.2
Dinv34277 Davidia involucrata HOM05D006297 ORTHO05D007873 9.7e-28 129.0 409 29.6
QL01p030412 Quercus lobata HOM05D006297 ORTHO05D007873 1.1e-26 125.6 449 28.7
Hma1.2p1_0615F.1_g189690 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 4.1e-26 123.6 388 28.4
Rhsim13G0077500 Rhododendron simsii HOM05D000001 ORTHO05D010418 2.6e-25 120.9 163 41.7
CsaV3_1G034520 Cucumis sativus L. HOM05D006297 ORTHO05D007873 4.5e-25 120.2 406 28.8
CSS0020880 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 2.2e-24 117.9 233 36.1
Manes.02G129500 Manihot esculenta HOM05D006297 ORTHO05D007873 2.9e-24 117.5 459 27.5
MELO3C020609.2 Cucumis melo HOM05D006297 ORTHO05D007873 6.5e-24 116.3 413 29.1
Sed0017584 Sechium edule HOM05D006297 ORTHO05D007873 1.1e-23 115.5 398 27.6
Aqoxy1G00878 Aquilegia oxysepala HOM05D006297 ORTHO05D007873 1.9e-23 114.8 174 45.4
BcaC01g01889 Brassica carinata HOM05D006297 ORTHO05D007873 1.6e-22 111.7 164 43.3
C03p70940 Brassica napus HOM05D006297 ORTHO05D007873 1.6e-22 111.7 161 43.5
BolC3t19369H Brassica oleracea HOM05D006297 ORTHO05D007873 1.6e-22 111.7 161 43.5
Nn2g13426 Nelumbo nucifera HOM05D006297 ORTHO05D007873 1.6e-22 111.7 167 47.3
Sed0011562 Sechium edule HOM05D006297 ORTHO05D007873 4.6e-22 110.2 406 29.1
MD11G1095400 Malus domestica HOM05D006297 ORTHO05D007873 1.0e-21 109.0 478 29.9
THA.LOC104799430 Tarenaya hassleriana HOM05D006297 ORTHO05D007873 1.8e-21 108.2 400 27.5
A06p20810 Brassica napus HOM05D006297 ORTHO05D007873 2.3e-21 107.8 161 42.2
CSS0015831 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 2.3e-21 107.8 181 45.9
Ciclev10029821m.g Citrus clementina HOM05D006297 ORTHO05D007873 8.8e-21 105.9 410 28.0
TWI79G0566 Tripterygium wilfordii HOM05D000001 ORTHO05D010418 1.1e-20 105.5 419 27.7
Eucgr.B02311 Eucalyptus grandis HOM05D006297 ORTHO05D007873 1.5e-20 105.1 467 25.9
ClCG03G001300 Citrullus lanatus HOM05D006297 ORTHO05D007873 2.5e-20 104.4 400 27.5
CAN.G394.75 Capsicum annuum HOM05D006297 ORTHO05D007873 4.3e-20 103.6 156 39.1
Aa31LG4G15680 Aethionema arabicum HOM05D006297 ORTHO05D007873 5.7e-20 103.2 411 26.0
Potri.001G243900 Populus trichocarpa HOM05D006297 ORTHO05D007873 5.7e-20 103.2 440 28.0
Thhalv10002567m.g Eutrema salsugineum HOM05D006297 ORTHO05D007873 2.2e-19 101.3 178 37.1
Nitab4.5_0006916g0050 Nicotiana tabacum HOM05D006297 ORTHO05D007873 2.2e-19 101.3 157 40.8
Nitab4.5_0023946g0010 Nicotiana tabacum HOM05D006297 ORTHO05D007873 2.2e-19 101.3 150 42.0
arahy.Tifrunner.gnm1.ann1.FG1CRE Arachis hypogaea HOM05D006297 ORTHO05D007873 2.8e-19 100.9 123 48.0
arahy.Tifrunner.gnm1.ann1.NT76K4 Arachis hypogaea HOM05D006297 ORTHO05D007873 2.8e-19 100.9 123 48.0
EL10Ac7g16061 Beta vulgaris HOM05D006297 ORTHO05D007873 2.8e-19 100.9 136 45.6
Sp5g14970 Schrenkiella parvula HOM05D006297 ORTHO05D007873 2.8e-19 100.9 159 37.7
ATR0559G346 Amborella trichopoda HOM05D006297 ORTHO05D007873 4.8e-19 100.1 119 47.9
Solyc06g076370.4 Solanum lycopersicum HOM05D006297 ORTHO05D007873 8.2e-19 99.4 399 27.8
BcaC09g49771 Brassica carinata HOM05D006297 ORTHO05D007873 1.1e-18 99.0 181 36.5
Sopen06g032780 Solanum pennellii HOM05D006297 ORTHO05D007873 1.1e-18 99.0 398 28.1
TAR369G0304 Trochodendron aralioides HOM05D006297 ORTHO05D007873 1.4e-18 98.6 381 26.5
AUR62001745 Chenopodium quinoa HOM05D006297 ORTHO05D007873 1.8e-18 98.2 171 38.0
Peaxi162Scf00481g00328 Petunia axillaris HOM05D006297 ORTHO05D007873 2.4e-18 97.8 394 27.9
PGSC0003DMG400030329 Solanum tuberosum HOM05D006297 ORTHO05D007873 2.4e-18 97.8 166 39.2
A01p26050 Brassica napus HOM05D006297 ORTHO05D007873 4.1e-18 97.1 179 35.2
BraA01t02522Z Brassica rapa HOM05D006297 ORTHO05D007873 4.1e-18 97.1 179 35.2
AL5G25730 Arabidopsis lyrata HOM05D006297 ORTHO05D007873 6.9e-18 96.3 175 37.7
BcaB05g23510 Brassica carinata HOM05D006297 ORTHO05D007873 9.1e-18 95.9 404 25.0
Carub.0005s1301 Capsella rubella HOM05D006297 ORTHO05D007873 1.5e-17 95.1 159 37.1
AT3G46750 Arabidopsis thaliana HOM05D006297 ORTHO05D007873 2.0e-17 94.7 185 35.7
Cc01_g13310 Coffea canephora HOM05D006297 ORTHO05D007873 2.6e-17 94.4 141 44.7
CARHR154920 Cardamine hirsuta HOM05D006297 ORTHO05D007873 3.4e-17 94.0 160 40.0
MBI05_g35633_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 3.4e-17 94.0 372 26.6
RcHm_v2.0_Chr5g0066301 Rosa chinensis HOM05D006297 ORTHO05D007873 4.5e-17 93.6 166 39.8
Cfa011548 Carpinus fangiana HOM05D006297 ORTHO05D007873 5.9e-17 93.2 148 41.9
Lj3g0014453 Lotus japonicus HOM05D006297 ORTHO05D007873 7.7e-17 92.8 112 49.1
DCAR_018924 Daucus carota HOM05D006297 ORTHO05D007873 1.7e-16 91.7 133 47.4
Duzib168G2114 Durio zibethinus HOM05D006297 ORTHO05D007873 2.2e-16 91.3 395 25.3
CANSAT54G0582 Cannabis sativa HOM05D006297 ORTHO05D007873 1.1e-15 89.0 479 28.0
Haze_24152 Corylus avellana HOM05D006297 ORTHO05D007873 1.1e-15 89.0 433 27.7
FAN16G1466 Fragaria x ananassa HOM05D006297 ORTHO05D007873 3.2e-15 87.4 154 37.7
Thecc.09G316300 Theobroma cacao HOM05D006297 ORTHO05D007873 3.2e-15 87.4 418 23.2
CiPaw.13G089900 Carya illinoinensis HOM05D006297 ORTHO05D007873 4.2e-15 87.0 438 26.9
Ca_20618_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 5.5e-15 86.7 471 24.6
Duzib170G0989 Durio zibethinus HOM05D006297 ORTHO05D007873 5.5e-15 86.7 167 37.7
BolC1t03251H Brassica oleracea HOM05D000026 ORTHO05D007873 9.4e-15 85.9 154 35.7
COL.COLO4_18571 Corchorus olitorius HOM05D006297 ORTHO05D007873 9.4e-15 85.9 177 33.9
FAN11G1892 Fragaria x ananassa HOM05D006297 ORTHO05D007873 9.4e-15 85.9 220 34.1
Medtr4g064830 Medicago truncatula HOM05D006297 ORTHO05D007873 1.2e-14 85.5 464 25.2
FvH4_3g36910 Fragaria vesca HOM05D006297 ORTHO05D007873 2.7e-14 84.3 220 33.6
FAN25G2608 Fragaria x ananassa HOM05D006297 ORTHO05D007873 2.7e-14 84.3 220 34.5
VMungo1127G1804 Vigna mungo HOM05D006297 ORTHO05D007873 3.6e-14 84.0 88 50.0
Phvul.011G061900 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 6.1e-14 83.2 393 24.9
Migut.D00880 Erythranthe guttata HOM05D006297 ORTHO05D007873 1.0e-13 82.4 383 26.9
Psat7g210960 Pisum sativum HOM05D006297 ORTHO05D007873 1.4e-13 82.0 181 37.0
FAN21G2693 Fragaria x ananassa HOM05D006297 ORTHO05D007873 1.8e-13 81.6 220 34.1
Gohir.D07G104500 Gossypium hirsutum HOM05D006297 ORTHO05D007873 3.9e-13 80.5 98 48.0
SalBow1G2607 Salvia bowleyana HOM05D006297 ORTHO05D007873 3.9e-13 80.5 66 54.5
SalBow6G6944 Salvia bowleyana HOM05D006297 ORTHO05D007873 3.9e-13 80.5 66 54.5
MSTRG.18559 Avicennia marina HOM05D006297 ORTHO05D007873 6.7e-13 79.7 479 23.4
AUR62020026 Chenopodium quinoa HOM05D006297 ORTHO05D007873 6.7e-13 79.7 162 38.9
Lalb_Chr03g0026471 Lupinus albus HOM05D006297 ORTHO05D007873 8.8e-13 79.3 146 35.6
Lalb_Chr22g0352441 Lupinus albus HOM05D006297 ORTHO05D007873 8.8e-13 79.3 250 34.8
Sabra16G0148100 Salix brachista HOM05D000026 ORTHO05D000094 8.8e-13 79.3 392 25.8
TPR.G23574 Trifolium pratense HOM05D006297 ORTHO05D007873 8.8e-13 79.3 410 25.6
DCAR_007431 Daucus carota HOM05D006297 ORTHO05D000003 5.7e-12 76.6 374 24.6
Glyma.12G060000 Glycine max HOM05D006297 ORTHO05D007873 7.4e-12 76.3 377 25.2
Ah.08g219890 Amaranthus hybridus HOM05D006297 ORTHO05D007873 1.3e-11 75.5 92 47.8
Dinv42987 Davidia involucrata HOM05D006297 ORTHO05D007873 1.3e-11 75.5 132 43.2
Dinv17043 Davidia involucrata HOM05D006297 ORTHO05D007873 2.2e-11 74.7 101 49.5
Dinv43111 Davidia involucrata HOM05D006297 ORTHO05D007873 2.2e-11 74.7 101 49.5
Lalb_Chr01g0003491 Lupinus albus HOM05D006297 ORTHO05D007873 2.2e-11 74.7 117 37.6
Hund04923 Selenicereus undatus HOM05D006297 ORTHO05D007873 3.7e-11 73.9 149 36.2
Prupe.6G070900 Prunus persica HOM05D006297 ORTHO05D007873 1.1e-10 72.4 186 30.1
Glyma.11G136300 Glycine max HOM05D006297 ORTHO05D007873 2.6e-09 67.8 360 25.8
SGA_v2.0_scaffold54G19479 Striga asiatica HOM05D006297 ORTHO05D007873 2.2e-08 64.7 148 31.8
Lsat_1_v5_gn_8_72960 Lactuca sativa HOM05D006297 ORTHO05D007873 3.8e-08 63.9 189 31.2
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 3.8e-08 63.9 184 31.0
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 1.5e-07 62.0 113 35.4
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 1.9e-07 61.6 135 34.8
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.5e-07 61.2 111 37.8
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 2.5e-07 61.2 142 34.5
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.2e-07 60.8 186 30.6
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 4.2e-07 60.5 117 40.2
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 5.5e-07 60.1 110 37.3
MBI14_g08019_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 7.2e-07 59.7 106 37.7
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 7.2e-07 59.7 90 42.2
Lsat_1_v5_gn_5_169521 Lactuca sativa HOM05D006297 ORTHO05D007873 9.4e-07 59.3 72 45.8
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 9.4e-07 59.3 98 40.8
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 9.4e-07 59.3 92 42.4
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.2e-06 58.9 111 36.9
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 1.2e-06 58.9 91 40.7
HPP92_015541 Vanilla planifolia HOM05D043147 ORTHO05D007873 1.6e-06 58.5 119 32.8
HanXRQChr11g0340671 Helianthus annuus HOM05D006297 ORTHO05D007873 2.1e-06 58.2 97 38.1
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 2.1e-06 58.2 93 38.7
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 2.7e-06 57.8 105 37.1
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 2.7e-06 57.8 167 29.3
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 2.7e-06 57.8 119 34.5
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 2.7e-06 57.8 93 41.9
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 2.7e-06 57.8 109 34.9
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 2.7e-06 57.8 111 36.9
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.7e-06 57.0 180 31.7
Lj3g0003832 Lotus japonicus HOM05D006297 ORTHO05D007873 4.7e-06 57.0 167 34.1
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 4.7e-06 57.0 107 35.5
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 6.1e-06 56.6 138 32.6
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 6.1e-06 56.6 116 32.8
Nn2g11187 Nelumbo nucifera HOM05D006297 ORTHO05D007873 6.1e-06 56.6 139 38.1
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 8.0e-06 56.2 171 31.6


User provided reference genes

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