Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G0741 Papaver somniferum HOM05D004023 ORTHO05D004681 7.0e-160 567.4 317 100.0
PSO339G4574 Papaver somniferum HOM05D004023 ORTHO05D004681 2.0e-45 187.2 284 48.6
PSO384G0928 Papaver somniferum HOM05D004023 ORTHO05D004681 6.3e-44 182.2 297 54.9
PSO384G3720 Papaver somniferum HOM05D004023 ORTHO05D004681 1.8e-43 180.6 297 55.9
PSO063G3828 Papaver somniferum HOM05D004023 ORTHO05D004681 7.0e-43 178.7 194 55.7
PSO339G2030 Papaver somniferum HOM05D004023 ORTHO05D004681 3.3e-37 159.8 288 45.5
Glyma.15G177500 Glycine max HOM05D004023 ORTHO05D004681 1.9e-24 117.5 170 41.2
Aa31sc133G50 Aethionema arabicum HOM05D004023 ORTHO05D004681 2.5e-24 117.1 153 39.2
AL3G43670 Arabidopsis lyrata HOM05D004023 ORTHO05D004681 2.5e-24 117.1 153 40.5
AT2G06025 Arabidopsis thaliana HOM05D004023 ORTHO05D004681 7.2e-24 115.5 153 39.9
Cc06_g12120 Coffea canephora HOM05D004023 ORTHO05D004681 7.2e-24 115.5 212 35.4
Migut.L01563 Erythranthe guttata HOM05D004023 ORTHO05D004681 1.6e-23 114.4 180 39.4
Medtr2g041620 Medicago truncatula HOM05D004023 ORTHO05D004681 2.1e-23 114.0 153 40.5
Psat1g134240 Pisum sativum HOM05D004023 ORTHO05D004681 2.8e-23 113.6 153 41.2
Phvul.009G227400 Phaseolus vulgaris HOM05D004023 ORTHO05D004681 3.6e-23 113.2 170 40.6
A07p06280 Brassica napus HOM05D004023 ORTHO05D004681 4.7e-23 112.8 153 37.9
BraA07t28423Z Brassica rapa HOM05D004023 ORTHO05D004681 4.7e-23 112.8 153 37.9
Glyma.09G069500 Glycine max HOM05D004023 ORTHO05D004681 8.0e-23 112.1 176 39.2
Lalb_Chr08g0232581 Lupinus albus HOM05D004023 ORTHO05D004681 8.0e-23 112.1 182 38.5
BcaC06g35952 Brassica carinata HOM05D004023 ORTHO05D004681 1.4e-22 111.3 153 37.9
Ca_23416_v3 Cicer arietinum L. HOM05D004023 ORTHO05D004681 1.4e-22 111.3 189 37.0
THA.LOC104826588 Tarenaya hassleriana HOM05D004023 ORTHO05D004681 1.4e-22 111.3 174 36.2
Thhalv10002632m.g Eutrema salsugineum HOM05D004023 ORTHO05D004681 1.8e-22 110.9 153 37.3
VMungo1309G2832 Vigna mungo HOM05D004023 ORTHO05D004681 1.8e-22 110.9 170 40.0
CSS0019806 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 3.0e-22 110.2 175 36.6
CARHR103710 Cardamine hirsuta HOM05D004023 ORTHO05D004681 3.0e-22 110.2 162 37.0
arahy.Tifrunner.gnm1.ann1.XHC94G Arachis hypogaea HOM05D004023 ORTHO05D004681 4.0e-22 109.8 155 40.0
TPR.G28584 Trifolium pratense HOM05D004023 ORTHO05D004681 5.2e-22 109.4 172 37.2
CSS0007502 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 6.8e-22 109.0 175 36.6
Dinv42390 Davidia involucrata HOM05D004023 ORTHO05D004681 6.8e-22 109.0 174 40.2
Lj6g0013866 Lotus japonicus HOM05D004023 ORTHO05D004681 6.8e-22 109.0 193 34.7
Thecc.09G077600 Theobroma cacao HOM05D004023 ORTHO05D004681 6.8e-22 109.0 172 37.2
TAR383G0448 Trochodendron aralioides HOM05D004023 ORTHO05D004681 6.8e-22 109.0 174 38.5
arahy.Tifrunner.gnm1.ann1.KW18SN Arachis hypogaea HOM05D004023 ORTHO05D004681 8.8e-22 108.6 182 38.5
Carub.0003s2716 Capsella rubella HOM05D004023 ORTHO05D004681 8.8e-22 108.6 196 34.7
C07p09330 Brassica napus HOM05D004023 ORTHO05D004681 1.2e-21 108.2 156 35.9
CiPaw.03G206900 Carya illinoinensis HOM05D004023 ORTHO05D004681 1.2e-21 108.2 191 36.6
AUR62028938 Chenopodium quinoa HOM05D004023 ORTHO05D004681 1.2e-21 108.2 152 39.5
Nitab4.5_0005767g0010 Nicotiana tabacum HOM05D004023 ORTHO05D004681 1.2e-21 108.2 167 36.5
Sp3g24610 Schrenkiella parvula HOM05D004023 ORTHO05D004681 1.2e-21 108.2 193 35.8
BolC7t41351H Brassica oleracea HOM05D004023 ORTHO05D004681 1.5e-21 107.8 153 36.6
AUR62025247 Chenopodium quinoa HOM05D004023 ORTHO05D004681 1.5e-21 107.8 152 39.5
CDE05G3056 Ceratophyllum demersum HOM05D004023 ORTHO05D004681 2.0e-21 107.5 152 39.5
Ciclev10009135m.g Citrus clementina HOM05D004023 ORTHO05D004681 2.0e-21 107.5 152 39.5
arahy.Tifrunner.gnm1.ann1.KDYD97 Arachis hypogaea HOM05D004023 ORTHO05D004681 4.4e-21 106.3 156 39.1
BcaB06g26883 Brassica carinata HOM05D004023 ORTHO05D004681 4.4e-21 106.3 193 34.2
DCAR_024747 Daucus carota HOM05D004023 ORTHO05D004681 4.4e-21 106.3 149 43.6
DCAR_031922 Daucus carota HOM05D004023 ORTHO05D004681 4.4e-21 106.3 149 43.6
PSO478G2869 Papaver somniferum HOM05D004023 ORTHO05D004681 4.4e-21 106.3 95 60.0
Actinidia29930 Actinidia chinensis HOM05D004023 ORTHO05D004681 5.7e-21 105.9 175 37.7
Potri.006G142100 Populus trichocarpa HOM05D004023 ORTHO05D004681 5.7e-21 105.9 186 37.1
CSS0006992 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 7.5e-21 105.5 175 36.0
Gohir.A06G076200 Gossypium hirsutum HOM05D004023 ORTHO05D004681 7.5e-21 105.5 173 37.6
Gorai.010G088100 Gossypium raimondii HOM05D004023 ORTHO05D004681 7.5e-21 105.5 173 37.6
Sabra06G0111200 Salix brachista HOM05D004023 ORTHO05D004681 9.8e-21 105.1 162 40.1
Atru.chr7.1700 Acer truncatum HOM05D004023 ORTHO05D004681 1.3e-20 104.8 173 35.8
Eucgr.C00816 Eucalyptus grandis HOM05D004023 ORTHO05D004681 1.3e-20 104.8 179 35.2
GSVIVG01015086001 Vitis vinifera HOM05D004023 ORTHO05D004681 1.7e-20 104.4 152 38.2
Peaxi162Scf00554g00920 Petunia axillaris HOM05D004023 ORTHO05D004681 1.1e-19 101.7 166 36.7
Cfa002993 Carpinus fangiana HOM05D004023 ORTHO05D004681 1.4e-19 101.3 177 36.2
Nitab4.5_0000024g0190 Nicotiana tabacum HOM05D004023 ORTHO05D004681 1.4e-19 101.3 167 35.9
Hund08779 Selenicereus undatus HOM05D004023 ORTHO05D004681 1.4e-19 101.3 190 34.7
Haze_26009 Corylus avellana HOM05D004023 ORTHO05D004681 1.8e-19 100.9 177 36.2
CsaV3_1G041000 Cucumis sativus L. HOM05D004023 ORTHO05D004681 2.4e-19 100.5 153 37.9
FAN28G2268 Fragaria x ananassa HOM05D004023 ORTHO05D004681 4.1e-19 99.8 185 34.6
PGSC0003DMG400027761 Solanum tuberosum HOM05D004023 ORTHO05D004681 5.4e-19 99.4 175 34.9
FvH4_1g08620 Fragaria vesca HOM05D004023 ORTHO05D004681 7.0e-19 99.0 185 34.6
FAN19G1115 Fragaria x ananassa HOM05D004023 ORTHO05D004681 7.0e-19 99.0 185 34.6
FAN26G1792 Fragaria x ananassa HOM05D004023 ORTHO05D004681 9.2e-19 98.6 185 34.1
PGR142G0045 Punica granatum HOM05D004023 ORTHO05D004681 9.2e-19 98.6 177 34.5
Lsat_1_v5_gn_7_35101 Lactuca sativa HOM05D004023 ORTHO05D004681 2.0e-18 97.4 163 36.8
RcHm_v2.0_Chr2g0094881 Rosa chinensis HOM05D004023 ORTHO05D004681 2.0e-18 97.4 191 34.0
Sed0007208 Sechium edule HOM05D004023 ORTHO05D004681 2.7e-18 97.1 198 32.8
CDE05G0867 Ceratophyllum demersum HOM05D004023 ORTHO05D004681 3.5e-18 96.7 138 37.7
ECA240G3187 Erigeron canadensis HOM05D004023 ORTHO05D004681 3.5e-18 96.7 188 33.5
FAN26G3281 Fragaria x ananassa HOM05D004023 ORTHO05D004681 4.5e-18 96.3 185 34.1
MD02G1091000 Malus domestica HOM05D004023 ORTHO05D004681 4.5e-18 96.3 188 34.0
QL11p000695 Quercus lobata HOM05D004023 ORTHO05D004681 4.5e-18 96.3 185 33.5
FAN23G1893 Fragaria x ananassa HOM05D004023 ORTHO05D004681 7.8e-18 95.5 185 33.5
Prupe.7G199400 Prunus persica HOM05D004023 ORTHO05D004681 1.0e-17 95.1 178 36.5
CSS0012197 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 1.3e-17 94.7 177 35.0
HanXRQChr09g0237831 Helianthus annuus HOM05D004023 ORTHO05D004681 1.7e-17 94.4 170 35.3
MD15G1217100 Malus domestica HOM05D004023 ORTHO05D004681 2.9e-17 93.6 188 33.5
CSS0047726 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 5.0e-17 92.8 180 33.3
SEGI_14760 Sequoiadendron giganteum HOM05D004023 ORTHO05D004681 5.0e-17 92.8 162 36.4
CANSAT56G0673 Cannabis sativa HOM05D004023 ORTHO05D004681 8.6e-17 92.0 183 33.9
PSO384G4677 Papaver somniferum HOM05D004023 ORTHO05D004681 8.6e-17 92.0 164 36.6
TWI34G0375 Tripterygium wilfordii HOM05D004023 ORTHO05D004681 8.6e-17 92.0 188 32.4
Aqoxy7G01044 Aquilegia oxysepala HOM05D004023 ORTHO05D004681 1.1e-16 91.7 201 28.9
Zm00001eb401920 Zea mays HOM05D004023 ORTHO05D004681 1.1e-16 91.7 152 35.5
Zm00001eb401960 Zea mays HOM05D004023 ORTHO05D004681 1.1e-16 91.7 152 35.5
Solyc05g025890.3 Solanum lycopersicum HOM05D004023 ORTHO05D004681 5.6e-16 89.4 163 34.4
TAR369G0443 Trochodendron aralioides HOM05D004023 ORTHO05D004681 7.3e-16 89.0 152 38.8
HPP92_013291 Vanilla planifolia HOM05D004023 ORTHO05D004681 7.3e-16 89.0 152 36.2
Sopen05g021320 Solanum pennellii HOM05D004023 ORTHO05D004681 9.5e-16 88.6 153 34.0
TWI63G1612 Tripterygium wilfordii HOM05D004023 ORTHO05D004681 1.2e-15 88.2 188 31.4
ATR1096G005 Amborella trichopoda HOM05D004023 ORTHO05D004681 1.6e-15 87.8 168 35.7
vmacro06339 Vaccinium macrocarpon HOM05D004023 ORTHO05D004681 1.6e-15 87.8 189 31.2
PGR119G0815 Punica granatum HOM05D004023 ORTHO05D004681 3.6e-15 86.7 164 34.8
Rhsim03G0227800 Rhododendron simsii HOM05D004023 ORTHO05D004681 3.6e-15 86.7 174 36.2
ClCG03G015110 Citrullus lanatus HOM05D004023 ORTHO05D004681 4.7e-15 86.3 159 35.2
MBI13_g42818_MAGBIO Magnolia biondii HOM05D004023 ORTHO05D004681 8.0e-15 85.5 155 31.6
Gohir.D06G075200 Gossypium hirsutum HOM05D004023 ORTHO05D004681 1.0e-14 85.1 149 36.2
Os03g0177000 Oryza sativa ssp. japonica HOM05D004023 ORTHO05D004681 1.4e-14 84.7 152 34.2
Nn8g38657 Nelumbo nucifera HOM05D004023 ORTHO05D004681 1.8e-14 84.3 142 36.6
Hma1.2p1_1711F.1_g298750 Hydrangea macrophylla HOM05D004023 ORTHO05D004681 2.3e-14 84.0 165 33.9
Sc18g0002510 Simmondsia chinensis HOM05D004023 ORTHO05D004681 3.0e-14 83.6 174 35.1
Actinidia24483 Actinidia chinensis HOM05D004023 ORTHO05D004681 5.2e-14 82.8 194 30.9
HanXRQChr14g0431991 Helianthus annuus HOM05D004023 ORTHO05D004681 5.2e-14 82.8 196 31.1
MBI13_g41748_MAGBIO Magnolia biondii HOM05D004023 ORTHO05D004681 5.2e-14 82.8 164 35.4
ATR0598G151 Amborella trichopoda HOM05D004023 ORTHO05D004681 6.8e-14 82.4 212 30.2
AUR62003487 Chenopodium quinoa HOM05D004023 ORTHO05D004681 1.5e-13 81.3 164 32.3
Glyma.13G110200 Glycine max HOM05D004023 ORTHO05D004681 1.5e-13 81.3 186 31.2
PSO339G3635 Papaver somniferum HOM05D004023 ORTHO05D004681 1.5e-13 81.3 165 33.9
MSTRG.18474 Avicennia marina HOM05D004023 ORTHO05D004681 2.0e-13 80.9 156 34.6
Cc01_g06740 Coffea canephora HOM05D004023 ORTHO05D004681 2.6e-13 80.5 165 35.2
vmacro04098 Vaccinium macrocarpon HOM05D004023 ORTHO05D004681 2.6e-13 80.5 172 32.6
Cpa.g.sc28.45 Carica papaya HOM05D004023 ORTHO05D004681 3.4e-13 80.1 93 41.9
Eucgr.J00649 Eucalyptus grandis HOM05D004023 ORTHO05D004681 5.7e-13 79.3 156 34.0
Rhsim13G0202100 Rhododendron simsii HOM05D004023 ORTHO05D004681 5.7e-13 79.3 172 32.6
Solyc12g099940.2 Solanum lycopersicum HOM05D004023 ORTHO05D004681 5.7e-13 79.3 156 34.6
Sopen12g034560 Solanum pennellii HOM05D004023 ORTHO05D004681 5.7e-13 79.3 156 34.6
Lj4A912T25 Lonicera japonica HOM05D004023 ORTHO05D004681 1.3e-12 78.2 192 31.8
SalBow5G0641 Salvia bowleyana HOM05D004023 ORTHO05D004681 1.3e-12 78.2 147 33.3
AUR62017796 Chenopodium quinoa HOM05D004023 ORTHO05D004681 2.2e-12 77.4 164 29.9
Gohir.D13G196385 Gossypium hirsutum HOM05D004023 ORTHO05D004681 2.2e-12 77.4 200 33.0
Gorai.013G224500 Gossypium raimondii HOM05D004023 ORTHO05D004681 2.2e-12 77.4 200 33.0
Aqoxy1G00042 Aquilegia oxysepala HOM05D004023 ORTHO05D004681 2.9e-12 77.0 165 33.9
GSVIVG01037415001 Vitis vinifera HOM05D004023 ORTHO05D004681 2.9e-12 77.0 164 32.9
Migut.D00690 Erythranthe guttata HOM05D004023 ORTHO05D004681 4.9e-12 76.3 164 31.1
DCAR_006328 Daucus carota HOM05D004023 ORTHO05D004681 6.4e-12 75.9 154 32.5
Glyma.17G049500 Glycine max HOM05D004023 ORTHO05D004681 1.4e-11 74.7 154 33.8
Gohir.A13G191000 Gossypium hirsutum HOM05D004023 ORTHO05D004681 1.8e-11 74.3 200 32.0
Mapoly0023s0080 Marchantia polymorpha HOM05D004023 ORTHO05D004681 5.4e-11 72.8 130 34.6
Hund12723 Selenicereus undatus HOM05D004023 ORTHO05D004681 5.4e-11 72.8 155 32.3
EL10Ac8g19063 Beta vulgaris HOM05D004023 ORTHO05D004681 7.0e-11 72.4 100 39.0
MELO3C015518.2 Cucumis melo HOM05D004023 ORTHO05D004681 4.6e-10 69.7 100 35.0
Lsat_1_v5_gn_2_38101 Lactuca sativa HOM05D004023 ORTHO05D004681 7.8e-10 68.9 198 30.3
Oeu020552.2 Olea europaea HOM05D004023 ORTHO05D004681 5.0e-09 66.2 87 41.4
Phvul.003G131100 Phaseolus vulgaris HOM05D004023 ORTHO05D004681 6.6e-09 65.9 160 27.5
unitig_0.g313 Utricularia gibba HOM05D004023 ORTHO05D004681 3.3e-08 63.5 105 37.1
Peaxi162Scf00062g00920 Petunia axillaris HOM05D004023 ORTHO05D004681 7.3e-08 62.4 109 32.1
SGA_v2.0_scaffold29G12111 Striga asiatica HOM05D004023 ORTHO05D004681 1.2e-07 61.6 86 37.2
Lj2C939G1 Lonicera japonica HOM05D004023 ORTHO05D004681 2.1e-07 60.8 102 36.3
SalBow6G6388 Salvia bowleyana HOM05D004023 ORTHO05D004681 6.2e-07 59.3 102 35.3
EL10Ac6g15385 Beta vulgaris HOM05D004023 ORTHO05D004681 1.1e-06 58.5 95 33.7
Duzib168G1033 Durio zibethinus HOM05D004023 ORTHO05D004681 1.8e-06 57.8 175 29.1
SMO200G0269 Selaginella moellendorffii HOM05D004023 ORTHO05D004681 5.2e-06 56.2 154 31.8


User provided reference genes

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