Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 4.3e-272 940.6 456 100.0
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 1.0e-252 876.3 457 93.4
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 7.6e-184 647.5 464 70.9
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 2.4e-182 642.5 462 69.0
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 3.2e-182 642.1 462 69.3
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 3.5e-181 638.6 462 70.8
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 8.7e-180 634.0 465 70.1
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 1.1e-179 633.6 461 68.1
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 1.9e-179 632.9 473 67.9
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 1.9e-179 632.9 458 70.3
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 7.4e-179 630.9 461 67.9
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 1.6e-178 629.8 462 68.2
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 2.1e-178 629.4 462 68.2
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 2.8e-178 629.0 463 67.8
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 3.7e-178 628.6 462 68.4
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 2.4e-177 625.9 452 69.9
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 3.1e-177 625.5 465 68.4
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 5.3e-177 624.8 462 67.7
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 5.3e-177 624.8 462 67.7
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 9.0e-177 624.0 462 68.0
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 9.0e-177 624.0 463 66.5
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 4.5e-176 621.7 461 67.5
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 4.5e-176 621.7 463 67.8
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 5.8e-176 621.3 462 66.9
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 7.6e-176 620.9 462 68.0
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 1.0e-175 620.5 463 68.7
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 1.3e-175 620.2 458 68.3
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 6.5e-175 617.8 462 66.5
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 4.2e-174 615.1 469 67.2
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 7.1e-174 614.4 462 66.2
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 1.3e-172 610.1 462 66.7
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 1.8e-172 609.8 462 66.2
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 1.8e-172 609.8 461 65.3
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 3.0e-172 609.0 459 64.3
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 3.0e-172 609.0 460 65.7
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.9e-172 608.6 459 64.3
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 3.9e-172 608.6 465 65.6
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 8.7e-172 607.4 463 66.7
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 8.7e-172 607.4 462 65.4
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 1.9e-171 606.3 453 69.5
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 3.3e-171 605.5 443 69.5
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 5.7e-171 604.7 459 63.8
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 1.3e-170 603.6 441 68.5
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 2.1e-170 602.8 449 67.9
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 2.4e-169 599.4 460 67.4
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 1.2e-168 597.0 460 65.0
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 1.5e-168 596.7 465 64.9
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 1.5e-168 596.7 430 67.9
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 3.4e-168 595.5 435 68.0
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 4.5e-168 595.1 470 64.0
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 4.5e-168 595.1 440 67.5
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 7.6e-168 594.3 460 64.8
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 7.6e-168 594.3 448 66.5
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.7e-167 593.2 468 65.0
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 1.7e-167 593.2 442 67.2
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 1.7e-167 593.2 457 64.8
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 2.2e-167 592.8 466 63.7
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 2.9e-167 592.4 465 63.7
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 2.9e-167 592.4 434 68.2
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 5.0e-167 591.7 458 64.8
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 1.4e-166 590.1 434 68.0
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 2.5e-166 589.3 460 64.1
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 3.2e-166 589.0 446 65.2
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 1.6e-165 586.6 474 61.4
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.1e-165 586.3 439 67.0
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 4.6e-165 585.1 469 64.4
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 2.3e-164 582.8 432 67.1
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 3.9e-164 582.0 430 67.7
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 5.1e-164 581.6 459 64.5
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 1.1e-163 580.5 410 70.2
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.5e-163 579.3 459 64.7
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 3.3e-163 578.9 462 63.4
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 4.3e-163 578.6 400 71.0
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 4.3e-163 578.6 456 63.6
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 5.7e-163 578.2 460 64.1
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 2.8e-162 575.9 458 64.6
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 1.1e-161 573.9 452 64.6
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 1.8e-161 573.2 457 62.8
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 1.5e-160 570.1 458 63.5
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 7.7e-160 567.8 467 62.1
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 3.8e-159 565.5 469 61.2
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 3.8e-159 565.5 441 65.8
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 3.8e-159 565.5 464 62.5
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 3.8e-159 565.5 392 67.6
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 1.4e-158 563.5 462 61.5
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 2.5e-158 562.8 462 61.7
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 1.2e-157 560.5 462 61.0
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 1.6e-157 560.1 476 60.9
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 4.6e-157 558.5 464 61.2
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 1.0e-156 557.4 464 61.0
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 1.0e-156 557.4 464 61.0
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 3.0e-156 555.8 464 61.0
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 1.1e-155 553.9 462 60.4
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 9.7e-155 550.8 504 57.7
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 3.1e-153 545.8 463 59.8
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 4.1e-153 545.4 441 60.3
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 9.1e-153 544.3 447 62.2
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 1.2e-152 543.9 493 60.4
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 7.2e-150 534.6 370 70.3
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 1.5e-147 526.9 390 68.2
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 5.7e-147 525.0 436 58.5
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 1.1e-145 520.8 436 58.0
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 9.1e-145 517.7 474 56.8
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 9.1e-145 517.7 465 59.1
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 2.0e-144 516.5 453 56.3
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 6.5e-143 511.5 410 62.4
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 8.5e-143 511.1 441 59.6
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 1.1e-142 510.8 409 63.3
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 1.5e-142 510.4 464 55.0
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 1.6e-141 506.9 404 62.6
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 1.3e-138 497.3 479 55.1
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 1.4e-137 493.8 491 54.2
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 3.1e-137 492.7 384 67.2
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 2.7e-133 479.6 340 68.8
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 8.0e-133 478.0 545 49.7
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.3e-130 470.7 347 62.8
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 1.6e-117 427.2 407 57.0
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 1.0e-116 424.5 340 60.3
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 1.4e-116 424.1 340 60.9
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 5.0e-111 405.6 429 51.3
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 5.4e-105 385.6 484 46.7
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 2.7e-104 383.3 332 60.8
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 1.5e-102 377.5 295 67.1
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 9.5e-102 374.8 383 48.3
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 6.2e-101 372.1 293 65.5
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 3.2e-97 359.8 280 63.2
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 6.2e-93 345.5 412 43.9
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.5e-91 340.9 428 46.7
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 2.7e-88 330.1 461 45.6
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 3.5e-88 329.7 453 39.7
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 1.6e-80 304.3 211 66.8
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 8.7e-71 271.9 277 55.2
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 1.4e-68 264.6 182 73.1
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 4.5e-67 259.6 219 64.4
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 6.7e-63 245.7 175 69.1
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 4.2e-49 199.9 206 51.5
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 1.4e-47 194.9 119 72.3
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 7.9e-40 169.1 221 48.4
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 1.8e-36 157.9 157 53.5
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 3.2e-33 147.1 197 44.2
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 6.7e-31 139.4 238 36.1
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 1.5e-30 138.3 107 61.7
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 8.2e-29 132.5 99 66.7
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.8e-28 131.3 241 41.1
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 3.1e-28 130.6 239 41.4
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 3.8e-26 123.6 109 63.3
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.6e-16 91.7 239 35.6
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 8.0e-16 89.4 60 73.3
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 5.2e-15 86.7 135 37.0
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 7.5e-14 82.8 85 54.1
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 1.3e-13 82.0 70 60.0
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 1.2e-11 75.5 94 50.0
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.7e-10 71.6 79 50.6
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.6e-08 65.1 36 80.6


User provided reference genes

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