Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 1.6e-225 785.8 401 100.0
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 3.2e-210 734.9 407 93.4
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 1.3e-81 307.8 424 47.9
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 9.0e-80 301.6 417 47.5
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 1.9e-77 293.9 417 46.5
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 9.3e-77 291.6 411 46.2
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 9.3e-77 291.6 409 45.5
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 1.2e-76 291.2 408 46.6
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 1.0e-75 288.1 414 44.2
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 5.1e-75 285.8 418 45.0
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 6.7e-75 285.4 421 45.1
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 5.7e-74 282.3 415 43.9
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 2.1e-73 280.4 433 44.6
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 2.8e-73 280.0 419 44.6
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 1.2e-71 274.6 414 44.4
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 1.3e-70 271.2 412 45.4
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 1.7e-70 270.8 411 45.3
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 2.9e-70 270.0 416 43.0
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 2.1e-68 263.8 423 43.5
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 2.3e-67 260.4 435 41.1
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 8.7e-67 258.5 359 44.8
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 1.1e-66 258.1 415 43.1
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 5.7e-66 255.8 404 44.1
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 2.8e-65 253.4 415 43.1
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 2.8e-65 253.4 428 42.3
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 6.3e-65 252.3 417 42.2
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 6.3e-65 252.3 417 42.2
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 8.2e-65 251.9 428 42.3
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 8.2e-65 251.9 417 43.6
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 1.4e-64 251.1 425 44.2
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 2.4e-64 250.4 429 42.0
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 6.9e-64 248.8 418 42.3
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 1.5e-63 247.7 412 42.0
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 2.6e-63 246.9 418 40.4
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 3.4e-63 246.5 420 43.3
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 7.7e-63 245.4 413 41.9
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 3.8e-62 243.0 448 42.6
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 5.0e-62 242.7 414 41.8
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 7.2e-61 238.8 436 38.3
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 1.2e-60 238.0 437 39.6
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 1.6e-60 237.7 416 40.1
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 1.6e-60 237.7 417 40.8
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 1.6e-60 237.7 416 39.4
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 2.7e-60 236.9 417 41.0
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 1.0e-59 235.0 419 42.2
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 2.3e-59 233.8 426 40.1
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 3.9e-59 233.0 358 44.1
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 5.1e-59 232.6 418 40.9
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 6.7e-59 232.3 424 42.9
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 1.5e-58 231.1 435 40.0
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 2.0e-58 230.7 413 38.7
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 3.3e-58 229.9 424 38.4
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 3.3e-58 229.9 424 37.7
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 4.4e-58 229.6 437 39.6
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 5.7e-58 229.2 447 39.6
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 5.7e-58 229.2 447 39.8
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 7.4e-58 228.8 409 39.4
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 2.8e-57 226.9 419 39.4
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 3.7e-57 226.5 417 40.0
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 4.8e-57 226.1 415 40.0
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 6.3e-57 225.7 437 39.8
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 8.2e-57 225.3 426 39.4
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 1.4e-56 224.6 414 39.6
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 1.8e-56 224.2 411 39.2
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 3.1e-56 223.4 410 39.0
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 3.1e-56 223.4 430 39.8
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 4.1e-56 223.0 423 39.2
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 9.1e-56 221.9 422 40.8
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 1.2e-55 221.5 422 41.0
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 5.9e-55 219.2 413 40.2
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 5.9e-55 219.2 432 41.7
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.0e-54 218.4 416 39.4
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 1.3e-54 218.0 401 39.4
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.8e-54 216.5 436 38.8
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 3.8e-54 216.5 419 38.9
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 6.5e-54 215.7 416 38.9
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 3.2e-53 213.4 415 37.8
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 4.2e-53 213.0 411 38.9
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 4.2e-53 213.0 399 40.1
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.6e-52 211.1 407 37.8
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 2.7e-52 210.3 345 43.2
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 2.0e-50 204.1 341 41.6
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 4.4e-50 203.0 435 35.9
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 4.4e-50 203.0 417 38.6
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 5.7e-50 202.6 359 39.8
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 5.7e-50 202.6 442 35.1
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.8e-49 199.5 424 38.7
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 8.2e-49 198.7 423 38.8
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 7.0e-48 195.7 409 36.9
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 1.2e-47 194.9 413 38.5
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.2e-47 194.9 294 44.2
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.5e-47 193.0 429 37.8
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 5.9e-47 192.6 437 33.4
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 7.7e-47 192.2 437 33.6
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 7.7e-47 192.2 437 33.6
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 1.0e-46 191.8 437 33.2
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.0e-46 191.8 350 40.9
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 3.8e-46 189.9 438 34.2
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 5.0e-46 189.5 437 33.0
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 1.5e-45 188.0 439 33.5
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 3.2e-45 186.8 410 36.8
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 1.6e-44 184.5 442 33.9
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 4.7e-44 183.0 443 34.5
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 1.0e-43 181.8 442 33.7
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 6.7e-43 179.1 442 32.1
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 5.7e-42 176.0 341 37.5
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 2.2e-41 174.1 416 32.7
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 1.8e-40 171.0 297 39.4
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 1.3e-38 164.9 218 45.0
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 1.7e-38 164.5 301 39.2
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 8.5e-38 162.2 256 43.0
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 2.5e-37 160.6 263 42.6
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 4.2e-37 159.8 221 43.9
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 4.2e-37 159.8 224 46.4
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 5.5e-37 159.5 231 44.6
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 7.2e-37 159.1 438 30.4
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 9.4e-37 158.7 438 30.8
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 1.2e-36 158.3 234 43.2
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 4.7e-36 156.4 237 41.4
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 1.0e-35 155.2 446 32.5
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 2.3e-35 154.1 193 48.7
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 2.3e-35 154.1 255 40.0
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 4.0e-35 153.3 506 30.8
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 2.0e-34 151.0 451 31.7
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 4.4e-34 149.8 274 37.2
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 5.7e-34 149.4 236 39.4
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 7.5e-34 149.1 238 39.1
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 9.8e-34 148.7 228 40.8
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 2.8e-33 147.1 451 32.4
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 6.3e-33 146.0 224 39.3
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 8.3e-33 145.6 334 35.3
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 2.4e-32 144.1 221 42.1
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 5.4e-32 142.9 448 32.4
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 3.5e-31 140.2 231 40.7
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 4.5e-31 139.8 293 36.2
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 5.0e-30 136.3 230 41.3
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 6.5e-30 136.0 440 31.8
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 1.1e-29 135.2 407 30.0
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 1.6e-28 131.3 210 41.9
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 2.8e-28 130.6 224 41.1
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 3.6e-28 130.2 437 31.1
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 4.7e-28 129.8 216 37.5
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 2.3e-27 127.5 262 37.8
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 3.0e-27 127.1 263 37.3
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 6.8e-27 125.9 204 40.2
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 1.5e-26 124.8 196 40.8
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 2.0e-26 124.4 232 41.4
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 4.9e-25 119.8 239 37.2
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 6.3e-25 119.4 332 33.7
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 1.1e-24 118.6 236 39.4
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 1.8e-24 117.9 210 40.5
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 2.0e-23 114.4 236 36.4
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 4.5e-23 113.2 403 30.0
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 2.3e-22 110.9 90 54.4
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 1.9e-21 107.8 273 33.7
Migut.N01589 Erythranthe guttata HOM05D004075 ORTHO05D004538 3.4e-18 97.1 163 42.3
AUR62009380 Chenopodium quinoa HOM05D004075 ORTHO05D004538 1.3e-17 95.1 153 41.2
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 2.4e-16 90.9 263 36.1
Rhsim07G0166600 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.0e-15 87.8 229 33.2
AUR62044097 Chenopodium quinoa HOM05D004075 ORTHO05D004538 5.0e-14 83.2 214 34.6
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 3.3e-13 80.5 374 26.2
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 5.6e-13 79.7 444 27.3
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 9.5e-13 79.0 176 33.0
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 9.5e-13 79.0 176 33.0
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 1.2e-12 78.6 47 61.7
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.6e-12 78.2 125 38.4
Rhsim01G0129600 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.8e-12 77.4 127 40.2
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 2.4e-08 64.3 51 54.9
BcaB01g00444 Brassica carinata HOM05D004075 ORTHO05D004538 4.6e-07 60.1 194 28.9


User provided reference genes

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