Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G0319 Papaver somniferum HOM05D004987 ORTHO05D005960 9.5e-40 166.4 84 100.0
PSO832G0476 Papaver somniferum HOM05D000145 ORTHO05D001435 3.7e-28 127.9 68 97.1
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 6.6e-25 117.1 69 87.0
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 7.3e-24 113.6 70 85.7
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 4.0e-14 81.3 69 60.9
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 4.4e-13 77.8 69 65.2
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 7.6e-13 77.0 69 60.9
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 7.6e-13 77.0 69 59.4
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 7.6e-13 77.0 69 60.9
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 1.3e-12 76.3 74 58.1
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 2.2e-12 75.5 69 59.4
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 2.2e-12 75.5 69 53.6
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 2.9e-12 75.1 69 53.6
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 3.8e-12 74.7 69 62.3
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 3.8e-12 74.7 69 62.3
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 3.8e-12 74.7 69 58.0
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 3.8e-12 74.7 71 57.7
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 4.9e-12 74.3 69 59.4
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 4.9e-12 74.3 69 60.9
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 4.9e-12 74.3 69 59.4
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 6.4e-12 73.9 69 58.0
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 6.4e-12 73.9 69 58.0
MELO3C000413.2 Cucumis melo HOM05D004987 ORTHO05D005960 6.4e-12 73.9 68 60.3
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 1.1e-11 73.2 69 59.4
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 1.9e-11 72.4 69 53.6
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 1.9e-11 72.4 69 53.6
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 1.9e-11 72.4 69 53.6
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 1.9e-11 72.4 69 53.6
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 1.9e-11 72.4 69 58.0
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 1.9e-11 72.4 69 58.0
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 2.4e-11 72.0 69 52.2
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 2.4e-11 72.0 69 52.2
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 2.4e-11 72.0 69 56.5
TPR.G35318 Trifolium pratense HOM05D004987 ORTHO05D005960 2.4e-11 72.0 78 52.6
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 3.2e-11 71.6 69 56.5
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 3.2e-11 71.6 69 53.6
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 3.2e-11 71.6 69 56.5
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 3.2e-11 71.6 69 56.5
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 5.4e-11 70.9 69 56.5
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 5.4e-11 70.9 69 56.5
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 7.1e-11 70.5 72 50.0
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 9.2e-11 70.1 69 56.5
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 9.2e-11 70.1 69 55.1
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 9.2e-11 70.1 69 55.1
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 9.2e-11 70.1 69 55.1
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 1.2e-10 69.7 70 55.7
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 1.2e-10 69.7 71 50.7
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 1.2e-10 69.7 69 56.5
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 1.2e-10 69.7 77 51.9
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 1.6e-10 69.3 69 56.5
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 2.1e-10 68.9 69 55.1
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 2.1e-10 68.9 69 52.2
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 2.7e-10 68.6 69 56.5
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 3.5e-10 68.2 69 53.6
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 3.5e-10 68.2 72 52.8
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 3.5e-10 68.2 69 58.0
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 3.5e-10 68.2 69 56.5
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 4.6e-10 67.8 69 55.1
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 4.6e-10 67.8 70 54.3
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 4.6e-10 67.8 70 54.3
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 4.6e-10 67.8 71 57.7
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 4.6e-10 67.8 69 53.6
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 6.0e-10 67.4 69 55.1
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 6.0e-10 67.4 69 58.0
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 6.0e-10 67.4 69 56.5
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 7.8e-10 67.0 69 55.1
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 7.8e-10 67.0 71 56.3
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 7.8e-10 67.0 69 52.2
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 7.8e-10 67.0 69 53.6
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 7.8e-10 67.0 69 53.6
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 7.8e-10 67.0 69 50.7
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.0e-09 66.6 71 54.9
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 1.0e-09 66.6 69 55.1
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.3e-09 66.2 70 52.9
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.3e-09 66.2 70 52.9
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 1.3e-09 66.2 69 55.1
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 1.3e-09 66.2 69 55.1
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 1.3e-09 66.2 69 55.1
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 1.3e-09 66.2 69 50.7
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 1.3e-09 66.2 69 52.2
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 1.7e-09 65.9 79 48.1
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 1.7e-09 65.9 71 52.1
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 2.3e-09 65.5 69 50.7
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 2.3e-09 65.5 69 50.7
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 2.3e-09 65.5 69 50.7
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 2.3e-09 65.5 69 50.7
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 2.3e-09 65.5 73 52.1
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 2.3e-09 65.5 69 52.2
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 3.0e-09 65.1 69 52.2
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 3.0e-09 65.1 69 50.7
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 3.0e-09 65.1 69 53.6
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 3.9e-09 64.7 86 47.7
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 8.7e-09 63.5 69 50.7
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 1.1e-08 63.2 80 45.0
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 1.5e-08 62.8 69 52.2
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 1.5e-08 62.8 68 47.1
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 3.3e-08 61.6 69 47.8
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 3.3e-08 61.6 68 50.0
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 4.3e-08 61.2 69 50.7
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 4.3e-08 61.2 69 46.4
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 4.3e-08 61.2 69 46.4
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 5.6e-08 60.8 69 49.3
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 7.3e-08 60.5 66 48.5
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 7.3e-08 60.5 69 49.3
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.6e-07 59.3 69 53.6
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 1.6e-07 59.3 69 52.2
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 1.6e-07 59.3 69 46.4
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 2.1e-07 58.9 69 46.4
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 2.8e-07 58.5 73 47.9
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 2.8e-07 58.5 69 46.4
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 3.6e-07 58.2 69 46.4
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 6.2e-07 57.4 69 47.8
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 1.4e-06 56.2 70 50.0
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 3.1e-06 55.1 65 47.7


User provided reference genes

Program Settings