Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G0191 Papaver somniferum HOM05D002282 ORTHO05D002403 4.3e-125 451.4 247 100.0
PSO170G0153 Papaver somniferum HOM05D002282 ORTHO05D002403 4.5e-82 308.5 271 68.3
PSO782G5325 Papaver somniferum HOM05D002282 ORTHO05D002403 1.2e-77 293.9 271 66.1
Nn2g11949 Nelumbo nucifera HOM05D002282 ORTHO05D002403 4.7e-63 245.4 228 63.6
TAR383G0492 Trochodendron aralioides HOM05D002282 ORTHO05D002403 5.8e-61 238.4 211 64.9
MBI04_g10418_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 3.3e-56 222.6 220 59.1
Potri.003G060900 Populus trichocarpa HOM05D002282 ORTHO05D002403 3.3e-56 222.6 218 60.6
SalBow1G0696 Salvia bowleyana HOM05D002282 ORTHO05D002403 4.0e-54 215.7 221 57.9
Sabra01G0138500 Salix brachista HOM05D002282 ORTHO05D002403 1.5e-53 213.8 218 58.7
Potri.001G173300 Populus trichocarpa HOM05D002282 ORTHO05D002403 3.4e-53 212.6 219 57.5
Thecc.06G073800 Theobroma cacao HOM05D002282 ORTHO05D002403 4.4e-53 212.2 226 58.0
Gohir.A05G124900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 1.7e-52 210.3 214 59.3
Dinv30569 Davidia involucrata HOM05D002282 ORTHO05D002403 2.2e-52 209.9 219 58.9
CSS0048718 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 4.9e-52 208.8 220 55.5
GSVIVG01017246001 Vitis vinifera HOM05D002282 ORTHO05D002403 1.4e-51 207.2 190 61.6
Actinidia15798 Actinidia chinensis HOM05D002282 ORTHO05D002403 2.4e-51 206.5 201 60.2
TWI18G0202 Tripterygium wilfordii HOM05D002282 ORTHO05D002403 7.1e-51 204.9 243 52.7
FAN25G3025 Fragaria x ananassa HOM05D002282 ORTHO05D002403 9.2e-51 204.5 182 62.1
QL06p023750 Quercus lobata HOM05D002282 ORTHO05D002403 9.2e-51 204.5 226 57.1
Cpa.g.sc336.4 Carica papaya HOM05D002282 ORTHO05D002403 1.2e-50 204.1 214 57.5
Oeu045971.1 Olea europaea HOM05D002282 ORTHO05D002403 1.2e-50 204.1 206 59.7
Peaxi162Scf00274g00850 Petunia axillaris HOM05D002282 ORTHO05D002403 1.2e-50 204.1 221 56.6
Prupe.6G012700 Prunus persica HOM05D002282 ORTHO05D002403 1.2e-50 204.1 207 58.0
PGR031G0824 Punica granatum HOM05D002282 ORTHO05D002403 1.2e-50 204.1 223 57.0
DCAR_025482 Daucus carota HOM05D002282 ORTHO05D002403 1.6e-50 203.8 213 57.3
Gohir.D05G125900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 1.6e-50 203.8 222 57.2
Lalb_Chr04g0262501 Lupinus albus HOM05D002282 ORTHO05D002403 1.6e-50 203.8 213 55.9
CAN.G407.112 Capsicum annuum HOM05D002282 ORTHO05D002403 2.1e-50 203.4 222 57.7
COL.COLO4_12890 Corchorus olitorius HOM05D002282 ORTHO05D002403 2.1e-50 203.4 186 62.4
Gorai.009G129900 Gossypium raimondii HOM05D002282 ORTHO05D002403 2.7e-50 203.0 222 57.2
Phvul.010G153600 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 2.7e-50 203.0 216 56.0
CiPaw.01G244200 Carya illinoinensis HOM05D002282 ORTHO05D002403 3.5e-50 202.6 206 57.3
Duzib235G0185 Durio zibethinus HOM05D002282 ORTHO05D002403 3.5e-50 202.6 226 58.0
Nitab4.5_0002257g0110 Nicotiana tabacum HOM05D002282 ORTHO05D002403 6.0e-50 201.8 219 56.2
Hund00550 Selenicereus undatus HOM05D002282 ORTHO05D002403 6.0e-50 201.8 219 57.5
Atru.chr1.3116 Acer truncatum HOM05D002282 ORTHO05D002403 7.8e-50 201.4 203 58.1
FAN11G0586 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.0e-49 201.1 182 61.5
RcHm_v2.0_Chr5g0081181 Rosa chinensis HOM05D002282 ORTHO05D002403 1.3e-49 200.7 221 55.2
Nitab4.5_0006574g0100 Nicotiana tabacum HOM05D002282 ORTHO05D002403 1.7e-49 200.3 219 55.3
MD15G1387900 Malus domestica HOM05D002282 ORTHO05D002403 3.0e-49 199.5 196 59.7
Sed0027048 Sechium edule HOM05D002282 ORTHO05D002403 3.0e-49 199.5 184 59.8
Aqoxy7G02081 Aquilegia oxysepala HOM05D002282 ORTHO05D002403 5.1e-49 198.7 229 55.5
Ciclev10025131m.g Citrus clementina HOM05D002282 ORTHO05D002403 5.1e-49 198.7 183 59.6
CANSAT56G4088 Cannabis sativa HOM05D002282 ORTHO05D002403 6.6e-49 198.4 183 59.6
PGSC0003DMG400000602 Solanum tuberosum HOM05D002282 ORTHO05D002403 6.6e-49 198.4 220 55.9
Actinidia01770 Actinidia chinensis HOM05D002282 ORTHO05D002403 1.1e-48 197.6 187 62.6
Cc04_g04050 Coffea canephora HOM05D002282 ORTHO05D002403 1.9e-48 196.8 204 56.4
Lj3g0004862 Lotus japonicus HOM05D002282 ORTHO05D002403 1.9e-48 196.8 185 58.4
TPR.G3896 Trifolium pratense HOM05D002282 ORTHO05D002403 1.9e-48 196.8 222 54.1
FAN16G2654 Fragaria x ananassa HOM05D002282 ORTHO05D002403 3.3e-48 196.1 178 61.8
Rhsim08G0216500 Rhododendron simsii HOM05D002282 ORTHO05D002403 3.3e-48 196.1 227 52.0
RcHm_v2.0_Chr1g0331681 Rosa chinensis HOM05D002282 ORTHO05D002403 5.6e-48 195.3 219 54.3
Sopen03g035310 Solanum pennellii HOM05D002282 ORTHO05D002403 5.6e-48 195.3 221 55.7
COL.COLO4_23901 Corchorus olitorius HOM05D002282 ORTHO05D002403 7.3e-48 194.9 209 56.0
Haze_05779 Corylus avellana HOM05D002282 ORTHO05D002403 7.3e-48 194.9 217 53.5
Sed0003011 Sechium edule HOM05D002282 ORTHO05D002403 9.6e-48 194.5 190 57.9
CsaV3_7G032650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 1.6e-47 193.7 184 58.2
Solyc03g116380.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 1.6e-47 193.7 221 56.1
Lsat_1_v5_gn_1_33521 Lactuca sativa HOM05D002282 ORTHO05D002403 3.6e-47 192.6 219 52.5
Lj5A68G60 Lonicera japonica HOM05D002282 ORTHO05D002403 3.6e-47 192.6 233 51.1
arahy.Tifrunner.gnm1.ann1.NNZF0Z Arachis hypogaea HOM05D002282 ORTHO05D002403 1.1e-46 191.0 199 54.8
HanXRQChr04g0096701 Helianthus annuus HOM05D002282 ORTHO05D002403 1.8e-46 190.3 208 53.8
HanXRQChr04g0097161 Helianthus annuus HOM05D002282 ORTHO05D002403 1.8e-46 190.3 208 53.8
HanXRQChr04g0097221 Helianthus annuus HOM05D002282 ORTHO05D002403 1.8e-46 190.3 208 53.8
QL05p027693 Quercus lobata HOM05D002282 ORTHO05D002403 1.8e-46 190.3 257 51.0
Eucgr.I02097 Eucalyptus grandis HOM05D002282 ORTHO05D002403 8.9e-46 188.0 220 54.1
VMungo0331G0533 Vigna mungo HOM05D002282 ORTHO05D002403 8.9e-46 188.0 229 51.5
SGA_v2.0_scaffold52G18905 Striga asiatica HOM05D002282 ORTHO05D002403 3.4e-45 186.0 223 52.0
MSTRG.1400 Avicennia marina HOM05D002282 ORTHO05D002403 7.6e-45 184.9 222 53.6
CiPaw.02G154700 Carya illinoinensis HOM05D002282 ORTHO05D002403 9.9e-45 184.5 208 54.3
Hund06582 Selenicereus undatus HOM05D002282 ORTHO05D002403 3.8e-44 182.6 196 54.6
Zm00001eb294740 Zea mays HOM05D002282 ORTHO05D002403 4.9e-44 182.2 216 52.8
Os12g0634800 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 8.4e-44 181.4 219 53.4
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 1.4e-43 180.6 219 53.0
Migut.C01081 Erythranthe guttata HOM05D002282 ORTHO05D002403 4.2e-43 179.1 213 52.1
HPP92_021532 Vanilla planifolia HOM05D002282 ORTHO05D002403 5.4e-43 178.7 196 52.6
Sabra03G0035200 Salix brachista HOM05D002282 ORTHO05D002403 9.3e-43 177.9 225 53.8
Ah.01g020860 Amaranthus hybridus HOM05D000121 ORTHO05D000102 1.2e-42 177.6 209 52.6
EL10Ac9g21953 Beta vulgaris HOM05D000121 ORTHO05D000102 1.6e-42 177.2 220 53.2
HPP92_021486 Vanilla planifolia HOM05D002282 ORTHO05D002403 2.1e-42 176.8 187 54.0
Os01g0649000 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 3.5e-42 176.0 247 48.2
AUR62011569 Chenopodium quinoa HOM05D002282 ORTHO05D002403 6.0e-42 175.3 166 59.0
CDE07G0270 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 7.8e-42 174.9 221 51.1
MELO3C023398.2 Cucumis melo HOM05D002282 ORTHO05D002403 7.8e-42 174.9 161 57.8
arahy.Tifrunner.gnm1.ann1.CV1QS0 Arachis hypogaea HOM05D002282 ORTHO05D002403 6.6e-41 171.8 218 49.1
Psat7g255200 Pisum sativum HOM05D002282 ORTHO05D002403 2.5e-40 169.9 194 52.6
Medtr4g011300 Medicago truncatula HOM05D002282 ORTHO05D002403 7.3e-40 168.3 224 50.0
CARHR015980 Cardamine hirsuta HOM05D002282 ORTHO05D002403 1.3e-39 167.5 223 47.5
AT1G15420 Arabidopsis thaliana HOM05D002282 ORTHO05D002403 1.6e-39 167.2 182 54.9
C08p17190 Brassica napus HOM05D002282 ORTHO05D002403 8.1e-39 164.9 194 52.6
BolC8t49348H Brassica oleracea HOM05D002282 ORTHO05D002403 8.1e-39 164.9 194 52.6
ClCG09G002680 Citrullus lanatus HOM05D002282 ORTHO05D002403 1.4e-38 164.1 250 44.8
Carub.0001s1522 Capsella rubella HOM05D002282 ORTHO05D002403 1.8e-38 163.7 175 56.0
BcaB03g13061 Brassica carinata HOM05D002282 ORTHO05D002403 2.4e-38 163.3 175 56.0
A06p11480 Brassica napus HOM05D002282 ORTHO05D002403 4.0e-38 162.5 175 54.3
BraA06t24325Z Brassica rapa HOM05D002282 ORTHO05D002403 4.0e-38 162.5 175 54.9
Thhalv10008433m.g Eutrema salsugineum HOM05D002282 ORTHO05D002403 2.0e-37 160.2 179 53.1
vmacro18959 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 2.0e-37 160.2 230 48.3
A08p31580 Brassica napus HOM05D002282 ORTHO05D002403 2.6e-37 159.8 217 48.8
BraA08t35080Z Brassica rapa HOM05D002282 ORTHO05D002403 2.6e-37 159.8 217 48.8
AL1G27540 Arabidopsis lyrata HOM05D002282 ORTHO05D002403 3.4e-37 159.5 178 53.9
C05p13600 Brassica napus HOM05D002282 ORTHO05D002403 1.3e-36 157.5 175 52.0
BolC5t30096H Brassica oleracea HOM05D002282 ORTHO05D002403 1.3e-36 157.5 175 52.0
BcaC07g38789 Brassica carinata HOM05D002282 ORTHO05D002403 1.7e-36 157.1 194 52.1
Aa31LG3G13660 Aethionema arabicum HOM05D002282 ORTHO05D002403 2.9e-36 156.4 201 50.2
Sp1g13790 Schrenkiella parvula HOM05D002282 ORTHO05D002403 3.8e-36 156.0 219 46.6
AUR62016386 Chenopodium quinoa HOM05D002282 ORTHO05D002403 2.4e-35 153.3 152 57.9
Glyma.08G210000 Glycine max HOM05D002282 ORTHO05D002403 3.2e-35 152.9 183 49.7
Duzib192G0585 Durio zibethinus HOM05D002282 ORTHO05D002403 4.2e-35 152.5 120 65.8
THA.LOC104812495 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 4.2e-35 152.5 221 46.6
TPR.G8058 Trifolium pratense HOM05D002282 ORTHO05D002403 7.1e-35 151.8 135 59.3
ATR0580G098 Amborella trichopoda HOM05D002282 ORTHO05D002403 9.3e-35 151.4 232 46.1
BolC8t52042H Brassica oleracea HOM05D002282 ORTHO05D002403 9.3e-35 151.4 155 56.1
Lj3g0012512 Lotus japonicus HOM05D002282 ORTHO05D002403 1.2e-34 151.0 152 57.2
BcaC07g41500 Brassica carinata HOM05D002282 ORTHO05D002403 2.1e-34 150.2 155 56.1
Sc12g0008870 Simmondsia chinensis HOM05D002282 ORTHO05D002403 2.7e-34 149.8 142 63.4
SHI18081 Sapria himalayana HOM05D002282 ORTHO05D002403 1.3e-33 147.5 196 47.4
C08p44950 Brassica napus HOM05D002282 ORTHO05D002403 5.1e-33 145.6 184 49.5
Glyma.13G363200 Glycine max HOM05D002282 ORTHO05D002403 6.6e-33 145.2 185 46.5
Glyma.07G032500 Glycine max HOM05D002282 ORTHO05D002403 1.3e-31 141.0 183 47.0
MD15G1388000 Malus domestica HOM05D002282 ORTHO05D002403 2.8e-31 139.8 146 58.2
BcaB03g14539 Brassica carinata HOM05D002282 ORTHO05D002403 3.1e-30 136.3 176 48.9
FAN21G1567 Fragaria x ananassa HOM05D002282 ORTHO05D002403 3.1e-30 136.3 189 48.1
HanXRQChr00c0540g0575621 Helianthus annuus HOM05D002282 ORTHO05D002403 2.0e-29 133.7 140 56.4
A09p61400 Brassica napus HOM05D002282 ORTHO05D002403 2.6e-29 133.3 161 49.7
unitig_747.g21506 Utricularia gibba HOM05D002282 ORTHO05D002403 1.7e-28 130.6 199 43.2
MD14G1090800 Malus domestica HOM05D002282 ORTHO05D002403 2.1e-26 123.6 209 42.6
BcaC05g25485 Brassica carinata HOM05D002282 ORTHO05D002403 1.3e-23 114.4 118 55.1
Ca_20422_v3 Cicer arietinum L. HOM05D002282 ORTHO05D002403 2.8e-23 113.2 181 41.4
Glyma.15G010600 Glycine max HOM05D002282 ORTHO05D002403 5.8e-21 105.5 102 55.9
FvH4_3g44480 Fragaria vesca HOM05D002282 ORTHO05D002403 1.9e-19 100.5 96 58.3
Manes.04G116700 Manihot esculenta HOM05D002282 ORTHO05D002403 2.5e-19 100.1 96 58.3
Mapoly0078s0006 Marchantia polymorpha HOM05D002282 ORTHO05D002403 4.2e-19 99.4 191 36.1
CDE06G0942 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 2.8e-15 86.7 106 53.8
Pp3c7_70 Physcomitrium patens HOM05D002282 ORTHO05D002403 6.3e-15 85.5 201 34.8
HanXRQChr04g0097171 Helianthus annuus HOM05D004669 ORTHO05D005767 1.2e-13 81.3 66 63.6
BraA09t41510Z Brassica rapa HOM05D002282 ORTHO05D002403 2.0e-13 80.5 98 51.0
BraA09t41511Z Brassica rapa HOM05D002282 ORTHO05D002403 1.7e-12 77.4 109 44.0
MD12G1094900 Malus domestica HOM05D002282 ORTHO05D002403 1.7e-12 77.4 72 56.9
AagrBONN_evm.TU.Sc2ySwM_362.229 Anthoceros agrestis HOM05D002282 ORTHO05D002403 2.2e-12 77.0 135 34.8
SEGI_26113 Sequoiadendron giganteum HOM05D002282 ORTHO05D002403 8.4e-12 75.1 126 38.9
Glyma.14G118600 Glycine max HOM05D002282 ORTHO05D002403 9.3e-11 71.6 60 63.3
MCO14G074 Micromonas commoda HOM05D002282 ORTHO05D002403 9.7e-08 61.6 134 35.1
MD12G1094800 Malus domestica HOM05D002282 ORTHO05D002403 2.8e-07 60.1 62 58.1
SMO361G0163 Selaginella moellendorffii HOM05D002282 ORTHO05D002403 1.8e-06 57.4 181 27.1
Cre12.g538500 Chlamydomonas reinhardtii HOM05D002282 ORTHO05D002403 2.4e-06 57.0 110 35.5
PSO170G5250 Papaver somniferum HOM05D002282 ORTHO05D002403 9.0e-06 55.1 99 38.4


User provided reference genes

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