Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO302G0218 Papaver somniferum HOM05D005997 ORTHO05D008323 8.2e-140 500.4 250 100.0
PSO210G1255 Papaver somniferum HOM05D005997 ORTHO05D008323 1.0e-113 413.7 285 76.8
TAR624G0829 Trochodendron aralioides HOM05D005997 ORTHO05D008323 1.1e-88 330.5 285 59.6
vmacro11568 Vaccinium macrocarpon HOM05D005997 ORTHO05D008323 4.0e-86 322.0 212 72.6
COL.COLO4_09766 Corchorus olitorius HOM05D005997 ORTHO05D008323 3.4e-85 318.9 292 56.8
QL08p008622 Quercus lobata HOM05D005997 ORTHO05D008323 2.2e-84 316.2 305 55.4
Hma1.2p1_0036F.1_g022850 Hydrangea macrophylla HOM05D005997 ORTHO05D008323 1.1e-83 313.9 281 58.4
Cpa.g.sc12.206 Carica papaya HOM05D005997 ORTHO05D008323 4.6e-82 308.5 199 73.9
TWI38G0893 Tripterygium wilfordii HOM05D005997 ORTHO05D008323 1.0e-81 307.4 284 56.0
Nn1g03269 Nelumbo nucifera HOM05D005997 ORTHO05D008323 1.7e-81 306.6 283 56.9
Eucgr.F03518 Eucalyptus grandis HOM05D005997 ORTHO05D008323 8.7e-81 304.3 286 57.3
Ciclev10009024m.g Citrus clementina HOM05D005997 ORTHO05D008323 1.1e-80 303.9 284 54.2
Actinidia00103 Actinidia chinensis HOM05D005997 ORTHO05D008323 1.5e-80 303.5 285 57.5
FAN21G1688 Fragaria x ananassa HOM05D005997 ORTHO05D008323 3.3e-80 302.4 284 55.3
Nitab4.5_0001160g0200 Nicotiana tabacum HOM05D005997 ORTHO05D008323 3.3e-80 302.4 287 56.8
Dinv40826 Davidia involucrata HOM05D005997 ORTHO05D008323 4.3e-80 302.0 267 58.1
Lj6g0009736 Lotus japonicus HOM05D005997 ORTHO05D008323 4.3e-80 302.0 291 53.6
Gohir.D01G072400 Gossypium hirsutum HOM05D005997 ORTHO05D008323 9.6e-80 300.8 290 54.5
Thecc.07G024000 Theobroma cacao HOM05D005997 ORTHO05D008323 9.6e-80 300.8 288 55.9
Nitab4.5_0010102g0010 Nicotiana tabacum HOM05D005997 ORTHO05D008323 1.3e-79 300.4 276 57.6
Rhsim06G0225700 Rhododendron simsii HOM05D005997 ORTHO05D008323 1.3e-79 300.4 286 57.3
RcHm_v2.0_Chr5g0042181 Rosa chinensis HOM05D005997 ORTHO05D008323 1.3e-79 300.4 284 55.6
Sopen07g033400 Solanum pennellii HOM05D005997 ORTHO05D008323 1.3e-79 300.4 287 56.8
RcHm_v2.0_Chr5g0042111 Rosa chinensis HOM05D005997 ORTHO05D008323 1.6e-79 300.1 284 55.6
Duzib213G0008 Durio zibethinus HOM05D005997 ORTHO05D008323 2.1e-79 299.7 288 55.2
Gorai.002G095400 Gossypium raimondii HOM05D005997 ORTHO05D008323 2.1e-79 299.7 290 54.1
Manes.03G134100 Manihot esculenta HOM05D005997 ORTHO05D008323 2.1e-79 299.7 288 55.9
Solyc07g065180.3 Solanum lycopersicum HOM05D005997 ORTHO05D008323 6.2e-79 298.1 287 56.4
CiPaw.12G135200 Carya illinoinensis HOM05D005997 ORTHO05D008323 8.1e-79 297.7 174 81.6
Prupe.4G230500 Prunus persica HOM05D005997 ORTHO05D008323 1.1e-78 297.4 291 55.7
GSVIVG01037764001 Vitis vinifera HOM05D005997 ORTHO05D008323 1.1e-78 297.4 278 57.2
Potri.008G180300 Populus trichocarpa HOM05D005997 ORTHO05D008323 3.1e-78 295.8 285 55.8
CANSAT11G0206 Cannabis sativa HOM05D005997 ORTHO05D008323 4.0e-78 295.4 284 56.3
Gohir.A01G086200 Gossypium hirsutum HOM05D005997 ORTHO05D008323 4.0e-78 295.4 290 53.4
PGSC0003DMG400022292 Solanum tuberosum HOM05D005997 ORTHO05D008323 5.3e-78 295.0 247 61.5
FvH4_3g23860 Fragaria vesca HOM05D005997 ORTHO05D008323 2.0e-77 293.1 173 79.2
FAN25G0611 Fragaria x ananassa HOM05D005997 ORTHO05D008323 2.6e-77 292.7 190 72.6
Sabra08G0137600 Salix brachista HOM05D005997 ORTHO05D008323 3.4e-77 292.4 285 55.4
VMungo0540G2314 Vigna mungo HOM05D005997 ORTHO05D008323 4.5e-77 292.0 284 52.1
Atru.BG.132.p Acer truncatum HOM05D005997 ORTHO05D008323 9.9e-77 290.8 174 78.2
MBI16_g42314_MAGBIO Magnolia biondii HOM05D005997 ORTHO05D008323 9.9e-77 290.8 244 62.7
AUR62015935 Chenopodium quinoa HOM05D005997 ORTHO05D008323 1.7e-76 290.0 246 59.8
Migut.M01687 Erythranthe guttata HOM05D005997 ORTHO05D008323 1.7e-76 290.0 238 62.2
Aqoxy1G04030 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 2.2e-76 289.7 176 77.8
MD11G1206400 Malus domestica HOM05D005997 ORTHO05D008323 2.2e-76 289.7 285 54.4
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 2.9e-76 289.3 201 71.1
Cc05_g14560 Coffea canephora HOM05D005997 ORTHO05D008323 3.8e-76 288.9 290 55.9
Glyma.08G325100 Glycine max HOM05D005997 ORTHO05D008323 6.4e-76 288.1 284 52.8
Phvul.006G051400 Phaseolus vulgaris HOM05D005997 ORTHO05D008323 1.1e-75 287.3 284 51.8
AUR62040674 Chenopodium quinoa HOM05D005997 ORTHO05D008323 1.4e-75 287.0 249 60.2
CAN.G337.36 Capsicum annuum HOM05D005997 ORTHO05D008323 1.9e-75 286.6 254 57.9
DCAR_022603 Daucus carota HOM05D005997 ORTHO05D008323 1.9e-75 286.6 174 78.7
CsaV3_7G018710 Cucumis sativus L. HOM05D005997 ORTHO05D008323 3.2e-75 285.8 275 53.5
Sc07g0002940 Simmondsia chinensis HOM05D005997 ORTHO05D008323 7.1e-75 284.6 287 52.6
Ca_20145_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 1.2e-74 283.9 209 66.0
Sed0012266 Sechium edule HOM05D005997 ORTHO05D008323 1.2e-74 283.9 284 52.1
SGA_v2.0_scaffold168G38522 Striga asiatica HOM05D005997 ORTHO05D008323 1.2e-74 283.9 291 54.3
arahy.Tifrunner.gnm1.ann1.JACZ02 Arachis hypogaea HOM05D005997 ORTHO05D008323 1.6e-74 283.5 174 75.9
arahy.Tifrunner.gnm1.ann1.N1CS9Q Arachis hypogaea HOM05D005997 ORTHO05D008323 1.6e-74 283.5 178 75.3
Ca_20142_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 1.6e-74 283.5 180 75.0
Medtr3g055920 Medicago truncatula HOM05D005997 ORTHO05D008323 1.6e-74 283.5 180 75.0
Os03g0587100 Oryza sativa ssp. japonica HOM05D005997 ORTHO05D008323 1.6e-74 283.5 174 74.1
TPR.G1907 Trifolium pratense HOM05D005997 ORTHO05D008323 1.6e-74 283.5 286 53.1
PGR044G2356 Punica granatum HOM05D005997 ORTHO05D008323 3.5e-74 282.3 174 75.9
SalBow8G0955 Salvia bowleyana HOM05D005997 ORTHO05D008323 3.5e-74 282.3 268 56.0
Oeu019619.1 Olea europaea HOM05D005997 ORTHO05D008323 6.0e-74 281.6 173 76.9
Psat5g172000 Pisum sativum HOM05D005997 ORTHO05D008323 7.9e-74 281.2 180 73.9
AT1G50575 Arabidopsis thaliana HOM05D005997 ORTHO05D008323 1.0e-73 280.8 177 75.1
Aa31LG10G3760 Aethionema arabicum HOM05D005997 ORTHO05D008323 1.3e-73 280.4 173 76.9
Psat5g171680 Pisum sativum HOM05D005997 ORTHO05D008323 1.3e-73 280.4 180 73.9
ClCG09G021010 Citrullus lanatus HOM05D005997 ORTHO05D008323 1.8e-73 280.0 316 47.8
THA.LOC104826490 Tarenaya hassleriana HOM05D005997 ORTHO05D008323 2.3e-73 279.6 179 74.3
BcaC08g43226 Brassica carinata HOM05D005997 ORTHO05D008323 5.1e-73 278.5 177 74.6
C06p05740 Brassica napus HOM05D005997 ORTHO05D008323 5.1e-73 278.5 177 74.6
BolC6t35684H Brassica oleracea HOM05D005997 ORTHO05D008323 5.1e-73 278.5 177 74.6
Thhalv10011693m.g Eutrema salsugineum HOM05D005997 ORTHO05D008323 5.1e-73 278.5 177 74.6
BraA06t23516Z Brassica rapa HOM05D005997 ORTHO05D008323 8.7e-73 277.7 177 75.1
CARHR040570 Cardamine hirsuta HOM05D005997 ORTHO05D008323 8.7e-73 277.7 174 75.3
A06p03040 Brassica napus HOM05D005997 ORTHO05D008323 1.1e-72 277.3 174 75.3
Sp1g37390 Schrenkiella parvula HOM05D005997 ORTHO05D008323 1.1e-72 277.3 177 74.0
Zm00001eb049320 Zea mays HOM05D005997 ORTHO05D008323 1.1e-72 277.3 174 73.6
Carub.0001s3961 Capsella rubella HOM05D005997 ORTHO05D008323 1.5e-72 276.9 177 74.6
BcaB07g33491 Brassica carinata HOM05D005997 ORTHO05D008323 1.9e-72 276.6 177 74.0
MSTRG.6975 Avicennia marina HOM05D005997 ORTHO05D008323 3.3e-72 275.8 173 75.7
AL1G58220 Arabidopsis lyrata HOM05D005997 ORTHO05D008323 7.4e-72 274.6 177 74.0
Lalb_Chr06g0174051 Lupinus albus HOM05D005997 ORTHO05D008323 9.6e-72 274.2 200 65.0
ATR0712G169 Amborella trichopoda HOM05D005997 ORTHO05D008323 2.1e-71 273.1 174 72.4
PGR031G3624 Punica granatum HOM05D005997 ORTHO05D008323 9.0e-70 267.7 170 73.5
EL10Ac4g07628 Beta vulgaris HOM05D005997 ORTHO05D008323 1.5e-69 266.9 173 72.8
Lj1C884G3 Lonicera japonica HOM05D005997 ORTHO05D008323 4.5e-69 265.4 274 52.2
SEGI_04256 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 7.6e-69 264.6 175 71.4
AagrBONN_evm.TU.Sc2ySwM_362.871 Anthoceros agrestis HOM05D005997 ORTHO05D008323 5.5e-67 258.5 202 62.9
Haze_09774 Corylus avellana HOM05D005997 ORTHO05D008323 5.5e-67 258.5 288 51.4
Lsat_1_v5_gn_7_114661 Lactuca sativa HOM05D005997 ORTHO05D008323 7.1e-67 258.1 164 78.0
SMO196G0283 Selaginella moellendorffii HOM05D005997 ORTHO05D008323 6.0e-66 255.0 173 68.2
unitig_899.g15278 Utricularia gibba HOM05D005997 ORTHO05D008323 1.3e-60 237.3 140 77.9
MELO3C024895.2 Cucumis melo HOM05D005997 ORTHO05D008323 7.9e-58 228.0 239 51.0
Pp3c14_23810 Physcomitrium patens HOM05D005997 ORTHO05D008323 1.3e-57 227.3 176 59.7
Peaxi162Scf00047g00845 Petunia axillaris HOM05D005997 ORTHO05D008323 9.6e-56 221.1 174 64.9
CDE07G1873 Ceratophyllum demersum HOM05D005997 ORTHO05D008323 1.1e-54 217.6 189 59.3
Glyma.18G084600 Glycine max HOM05D005997 ORTHO05D008323 2.3e-49 199.9 135 72.6
CSS0016170 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.2e-45 187.6 115 75.7
CSS0047434 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.5e-45 187.2 115 75.7
Cfa020073 Carpinus fangiana HOM05D005997 ORTHO05D008323 3.3e-40 169.5 104 77.9
Cre01.g039850 Chlamydomonas reinhardtii HOM05D005997 ORTHO05D005044 1.2e-37 161.0 175 46.3
PRCOL_00002636 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 1.0e-36 157.9 178 49.4
Atru.chr7.2351 Acer truncatum HOM05D005997 ORTHO05D008323 6.5e-36 155.2 109 69.7
Atru.chr7.2230 Acer truncatum HOM05D005997 ORTHO05D008323 5.5e-35 152.1 97 74.2
MCO11G065 Micromonas commoda HOM05D004293 ORTHO05D005044 9.4e-35 151.4 172 44.2
PRCOL_00000116 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 1.2e-34 151.0 203 43.8
MCO09G728 Micromonas commoda HOM05D004293 ORTHO05D005044 4.7e-34 149.1 172 43.0
arahy.Tifrunner.gnm1.ann1.D6FGWZ Arachis hypogaea HOM05D005997 ORTHO05D008323 2.2e-31 140.2 89 71.9
Prupe.4G230300 Prunus persica HOM05D005997 ORTHO05D008323 2.0e-29 133.7 106 63.2
Dinv10299 Davidia involucrata HOM05D005997 ORTHO05D008323 4.5e-29 132.5 174 43.7
HPP92_007350 Vanilla planifolia HOM05D005997 ORTHO05D008323 6.7e-25 118.6 103 57.3
QL08p004262 Quercus lobata HOM05D005997 ORTHO05D008323 2.2e-23 113.6 139 51.1
QL08p058329 Quercus lobata HOM05D005997 ORTHO05D008323 2.2e-23 113.6 139 51.1
CSS0025804 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.8e-22 110.5 168 42.9
SEGI_34153 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 2.4e-22 110.2 70 71.4
QL05p025044 Quercus lobata HOM05D005997 ORTHO05D008323 3.5e-21 106.3 139 46.8
Aqoxy1G04027 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 3.8e-20 102.8 63 73.0
CSS0048391 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.8e-17 94.0 49 83.7
CSS0044071 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.2e-16 91.3 56 75.0
QL08p004281 Quercus lobata HOM05D005997 ORTHO05D007626 5.7e-16 89.0 113 47.8
QL08p004325 Quercus lobata HOM05D005997 ORTHO05D337094 3.1e-14 83.2 118 44.9
QL11p054366 Quercus lobata HOM05D005997 ORTHO05D338109 3.1e-14 83.2 118 44.9
CSS0025137 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 9.1e-14 81.6 57 70.2
Lsat_1_v5_gn_8_39280 Lactuca sativa HOM05D005997 ORTHO05D230963 8.8e-09 65.1 48 62.5
QL08p058354 Quercus lobata HOM05D005997 ORTHO05D007626 2.6e-08 63.5 122 37.7
arahy.Tifrunner.gnm1.ann1.U3B0HF Arachis hypogaea HOM05D003842 ORTHO05D026908 8.3e-07 58.5 38 73.7
Rhsim03G0100400 Rhododendron simsii HOM05D005997 ORTHO05D338268 1.4e-06 57.8 52 55.8
QL08p004656 Quercus lobata HOM05D005997 ORTHO05D337365 9.2e-06 55.1 35 71.4


User provided reference genes

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