Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO302G0140 Papaver somniferum HOM05D005096 ORTHO05D006566 0.0e+00 1692.9 911 100.0
PSO170G0567 Papaver somniferum HOM05D005096 ORTHO05D006566 0.0e+00 1627.1 912 96.5
TAR633G0362 Trochodendron aralioides HOM05D005096 ORTHO05D006566 0.0e+00 1096.6 936 65.2
Aqoxy2G03326 Aquilegia oxysepala HOM05D005096 ORTHO05D006566 3.6e-302 1041.6 934 62.1
Dinv32937 Davidia involucrata HOM05D005096 ORTHO05D006566 8.3e-299 1030.4 909 62.0
GSVIVG01011085001 Vitis vinifera HOM05D005096 ORTHO05D006566 4.7e-286 988.0 938 58.4
CSS0045500 Camellia sinensis var. sinensis HOM05D005096 ORTHO05D006566 3.8e-283 978.4 933 59.1
Cfa006136 Carpinus fangiana HOM05D005096 ORTHO05D006566 6.4e-283 977.6 933 59.1
Haze_04712 Corylus avellana HOM05D005096 ORTHO05D006566 3.3e-279 965.3 976 57.3
Manes.05G076137 Manihot esculenta HOM05D005096 ORTHO05D006566 1.3e-278 963.4 889 58.7
Thecc.01G279600 Theobroma cacao HOM05D005096 ORTHO05D006566 3.6e-278 961.8 904 60.3
COL.COLO4_09099 Corchorus olitorius HOM05D005096 ORTHO05D006566 1.4e-277 959.9 907 58.3
QL12p021914 Quercus lobata HOM05D005096 ORTHO05D006566 9.0e-277 957.2 843 61.0
MBI19_g21295_MAGBIO Magnolia biondii HOM05D005096 ORTHO05D006566 1.7e-275 953.0 836 64.0
Prupe.8G241300 Prunus persica HOM05D005096 ORTHO05D006566 2.2e-275 952.6 896 59.6
Atru.chr5.1434 Acer truncatum HOM05D005096 ORTHO05D006566 1.6e-273 946.4 896 58.1
CiPaw.07G091400 Carya illinoinensis HOM05D005096 ORTHO05D006566 3.9e-272 941.8 899 58.4
Duzib138G0773 Durio zibethinus HOM05D005096 ORTHO05D006566 3.9e-272 941.8 892 58.1
Actinidia09139 Actinidia chinensis HOM05D005096 ORTHO05D006566 5.6e-271 937.9 913 58.2
MD11G1286100 Malus domestica HOM05D005096 ORTHO05D006566 9.6e-271 937.2 906 57.5
Sabra05G0159300 Salix brachista HOM05D005096 ORTHO05D006566 2.1e-270 936.0 929 56.5
Potri.005G209200 Populus trichocarpa HOM05D005096 ORTHO05D006566 2.4e-269 932.6 899 58.1
vmacro02569 Vaccinium macrocarpon HOM05D005096 ORTHO05D006566 2.4e-269 932.6 910 57.6
Actinidia00750 Actinidia chinensis HOM05D005096 ORTHO05D006566 6.9e-269 931.0 916 58.1
FAN15G1882 Fragaria x ananassa HOM05D005096 ORTHO05D006566 9.0e-269 930.6 910 57.3
Lj2A1173G9 Lonicera japonica HOM05D005096 ORTHO05D006566 1.2e-268 930.2 893 58.2
FAN27G2515 Fragaria x ananassa HOM05D005096 ORTHO05D006566 2.6e-268 929.1 913 57.4
ClCG07G000240 Citrullus lanatus HOM05D005096 ORTHO05D006566 5.8e-268 927.9 923 56.2
FAN20G2556 Fragaria x ananassa HOM05D005096 ORTHO05D006566 1.3e-267 926.8 892 58.1
RcHm_v2.0_Chr6g0291071 Rosa chinensis HOM05D005096 ORTHO05D006566 2.9e-267 925.6 933 56.5
Rhsim13G0024600 Rhododendron simsii HOM05D005096 ORTHO05D006566 8.4e-267 924.1 933 56.4
CsaV3_6G037120 Cucumis sativus L. HOM05D005096 ORTHO05D006566 3.2e-266 922.2 902 56.8
FvH4_2g23600 Fragaria vesca HOM05D005096 ORTHO05D006566 4.2e-266 921.8 910 57.3
Gorai.004G080200 Gossypium raimondii HOM05D005096 ORTHO05D006566 3.0e-264 915.6 892 56.1
Glyma.10G026400 Glycine max HOM05D005096 ORTHO05D006566 1.1e-263 913.7 903 56.1
TWI23G0916 Tripterygium wilfordii HOM05D005096 ORTHO05D006566 9.6e-263 910.6 843 59.3
Glyma.02G147400 Glycine max HOM05D005096 ORTHO05D006566 2.1e-262 909.4 856 57.9
Lj5g0021757 Lotus japonicus HOM05D005096 ORTHO05D006566 1.1e-261 907.1 880 56.7
Ciclev10023868m.g Citrus clementina HOM05D005096 ORTHO05D006566 3.1e-261 905.6 894 57.0
Medtr1g072270 Medicago truncatula HOM05D005096 ORTHO05D006566 2.0e-260 902.9 881 56.3
arahy.Tifrunner.gnm1.ann1.2R7T4K Arachis hypogaea HOM05D005096 ORTHO05D006566 1.7e-259 899.8 872 56.1
Sed0025205 Sechium edule HOM05D005096 ORTHO05D006566 6.5e-259 897.9 901 55.5
VMungo0720G0024 Vigna mungo HOM05D005096 ORTHO05D006566 2.5e-258 896.0 871 56.3
CANSAT25G0791 Cannabis sativa HOM05D005096 ORTHO05D006566 5.5e-258 894.8 893 55.8
Phvul.007G172000 Phaseolus vulgaris HOM05D005096 ORTHO05D006566 2.1e-257 892.9 876 55.9
CDE06G0317 Ceratophyllum demersum HOM05D005096 ORTHO05D006566 7.9e-257 891.0 900 54.7
Nitab4.5_0000458g0050 Nicotiana tabacum HOM05D005096 ORTHO05D006566 1.0e-256 890.6 916 54.8
TPR.G9125 Trifolium pratense HOM05D005096 ORTHO05D006566 3.9e-256 888.6 872 56.4
DCAR_002736 Daucus carota HOM05D005096 ORTHO05D006566 1.1e-255 887.1 901 54.8
Nitab4.5_0008435g0030 Nicotiana tabacum HOM05D005096 ORTHO05D006566 1.1e-255 887.1 913 54.5
ECA247G0546 Erigeron canadensis HOM05D005096 ORTHO05D006566 1.5e-255 886.7 905 55.2
Sopen09g026860 Solanum pennellii HOM05D005096 ORTHO05D006566 5.7e-255 884.8 913 54.3
Lsat_1_v5_gn_9_3760 Lactuca sativa HOM05D005096 ORTHO05D006566 9.7e-255 884.0 856 56.8
Sc05g0004960 Simmondsia chinensis HOM05D005096 ORTHO05D006566 2.2e-254 882.9 930 53.2
Duzib133G0542 Durio zibethinus HOM05D005096 ORTHO05D006566 2.8e-254 882.5 918 55.4
Migut.D00294 Erythranthe guttata HOM05D005096 ORTHO05D006566 1.1e-253 880.6 883 56.1
ATR0626G051 Amborella trichopoda HOM05D005096 ORTHO05D006566 4.1e-253 878.6 872 56.4
Oeu022870.1 Olea europaea HOM05D005096 ORTHO05D006566 1.2e-252 877.1 906 55.4
Gohir.D08G075900 Gossypium hirsutum HOM05D005096 ORTHO05D006566 2.6e-252 875.9 892 54.3
HPP92_012091 Vanilla planifolia HOM05D003650 ORTHO05D004213 4.5e-252 875.2 889 56.2
C08p00440 Brassica napus HOM05D005096 ORTHO05D006566 1.0e-251 874.0 855 55.6
FAN24G2260 Fragaria x ananassa HOM05D005096 ORTHO05D006566 2.2e-251 872.8 910 55.2
Ca_09758_v3 Cicer arietinum L. HOM05D005096 ORTHO05D006566 8.5e-251 870.9 875 54.7
arahy.Tifrunner.gnm1.ann1.TN9YNV Arachis hypogaea HOM05D005096 ORTHO05D006566 1.1e-250 870.5 939 52.2
Peaxi162Scf01607g00116 Petunia axillaris HOM05D005096 ORTHO05D006566 4.6e-249 865.1 903 54.6
Sp1g02185 Schrenkiella parvula HOM05D005096 ORTHO05D006566 4.6e-249 865.1 888 54.1
THA.LOC104801235 Tarenaya hassleriana HOM05D005096 ORTHO05D006566 4.6e-249 865.1 883 54.9
BolC8t46843H Brassica oleracea HOM05D005096 ORTHO05D006566 7.9e-249 864.4 855 55.0
SalBow4G0282 Salvia bowleyana HOM05D005096 ORTHO05D006566 1.4e-248 863.6 905 54.8
A08p37450 Brassica napus HOM05D005096 ORTHO05D006566 1.1e-247 860.5 854 55.0
BraA08t35643Z Brassica rapa HOM05D005096 ORTHO05D006566 1.1e-247 860.5 854 55.0
Thhalv10006729m.g Eutrema salsugineum HOM05D005096 ORTHO05D006566 1.9e-247 859.8 869 54.4
CARHR002500 Cardamine hirsuta HOM05D005096 ORTHO05D006566 3.3e-247 859.0 863 54.8
HanXRQChr10g0282661 Helianthus annuus HOM05D005096 ORTHO05D006566 4.8e-246 855.1 878 54.6
AL1G12650 Arabidopsis lyrata HOM05D005096 ORTHO05D006566 8.2e-246 854.4 888 53.6
Carub.0001s0230 Capsella rubella HOM05D005096 ORTHO05D006566 2.6e-244 849.4 890 52.9
MSTRG.21562 Avicennia marina HOM05D005096 ORTHO05D006566 3.8e-243 845.5 891 54.4
Hund05342 Selenicereus undatus HOM05D005096 ORTHO05D006566 5.0e-243 845.1 935 51.3
Psat6g060000 Pisum sativum HOM05D005096 ORTHO05D006566 3.6e-241 839.0 796 58.5
EL10Ac7g17230 Beta vulgaris HOM05D005096 ORTHO05D006566 2.3e-240 836.3 881 52.7
CAN.G242.2 Capsicum annuum HOM05D005096 ORTHO05D006566 9.7e-239 830.9 864 53.6
Aa31LG1G9370 Aethionema arabicum HOM05D005096 ORTHO05D006566 1.4e-237 827.0 889 52.8
Cc01_g19500 Coffea canephora HOM05D005096 ORTHO05D006566 6.5e-235 818.1 853 54.4
Ah.15g091940 Amaranthus hybridus HOM05D005096 ORTHO05D006566 9.4e-234 814.3 866 52.9
Gohir.A08G067500 Gossypium hirsutum HOM05D005096 ORTHO05D006566 1.1e-226 790.8 762 56.2
Eucgr.H01482 Eucalyptus grandis HOM05D005096 ORTHO05D006566 3.7e-222 775.8 731 56.6
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 4.8e-222 775.4 853 52.6
AUR62036827 Chenopodium quinoa HOM05D005096 ORTHO05D006566 3.6e-217 759.2 924 47.4
PGR119G0033 Punica granatum HOM05D005096 ORTHO05D006566 6.1e-217 758.4 744 57.1
Os05g0390100 Oryza sativa ssp. japonica HOM05D005096 ORTHO05D006566 8.8e-216 754.6 783 53.8
Solyc09g065160.4 Solanum lycopersicum HOM05D005096 ORTHO05D006566 8.8e-216 754.6 780 53.5
Hma1.2p1_0257F.1_g103450 Hydrangea macrophylla HOM05D005096 ORTHO05D006566 2.4e-213 746.5 663 61.1
SGA_v2.0_scaffold1G00471 Striga asiatica HOM05D005096 ORTHO05D006566 9.8e-207 724.5 847 50.1
AUR62043137 Chenopodium quinoa HOM05D005096 ORTHO05D006566 6.3e-206 721.8 890 47.0
AT1G03160 Arabidopsis thaliana HOM05D005096 ORTHO05D006566 1.5e-191 674.1 654 55.8
Mapoly0002s0267 Marchantia polymorpha HOM05D005096 ORTHO05D006566 8.1e-185 651.7 869 44.0
Pp3c10_17390 Physcomitrium patens HOM05D005096 ORTHO05D006566 2.3e-184 650.2 876 43.3
AagrBONN_evm.TU.Sc2ySwM_228.961 Anthoceros agrestis HOM05D005096 ORTHO05D006566 4.9e-182 642.5 859 45.1
Pp3c3_25850 Physcomitrium patens HOM05D005096 ORTHO05D006566 1.3e-179 634.4 873 42.7
Zm00001eb287190 Zea mays HOM05D005096 ORTHO05D006566 6.6e-179 632.1 639 54.1
Duzib133G0424 Durio zibethinus HOM05D005096 ORTHO05D006566 1.3e-174 617.8 530 61.3
Lalb_Chr02g0142781 Lupinus albus HOM05D005096 ORTHO05D006566 5.6e-170 602.4 530 60.8
MD11G1312200 Malus domestica HOM05D005096 ORTHO05D006566 4.6e-156 556.2 704 48.7
SMO147G0152 Selaginella moellendorffii HOM05D005096 ORTHO05D006566 3.9e-147 526.6 864 38.5
MELO3C014401.2 Cucumis melo HOM05D005096 ORTHO05D006566 6.9e-144 515.8 477 58.3
Sabra02G0043400 Salix brachista HOM05D005096 ORTHO05D006566 5.3e-136 489.6 797 41.2
MD11G1311700 Malus domestica HOM05D005096 ORTHO05D006566 5.0e-118 429.9 472 53.2
PRCOL_00001755 Prasinoderma coloniale HOM05D005096 ORTHO05D006566 2.2e-110 404.4 890 32.0
CBR_g4009 Chara braunii HOM05D005096 ORTHO05D006566 1.2e-103 382.1 942 32.3
MELO3C014400.2 Cucumis melo HOM05D005096 ORTHO05D008790 8.5e-102 375.9 425 52.2
Hund05386 Selenicereus undatus HOM05D005096 ORTHO05D006566 7.2e-93 346.3 404 51.0
Cre14.g616600 Chlamydomonas reinhardtii HOM05D005096 ORTHO05D006566 1.7e-89 335.1 935 27.8
MCO02G198 Micromonas commoda HOM05D005096 ORTHO05D006566 1.1e-88 332.4 934 28.2
AUR62043139 Chenopodium quinoa HOM05D005096 ORTHO05D006566 5.9e-87 326.6 349 50.1
AUR62043138 Chenopodium quinoa HOM05D005096 ORTHO05D006566 1.1e-80 305.8 456 43.6
Cpa.g.sc52.38 Carica papaya HOM05D005096 ORTHO05D006566 2.7e-79 301.2 310 54.2
Cpa.g.c40412 Carica papaya HOM05D005096 ORTHO05D006566 8.9e-75 286.2 289 54.0
Lalb_Chr02g0142771 Lupinus albus HOM05D005096 ORTHO05D006566 3.5e-71 274.2 353 48.2
Cpa.g.c38803 Carica papaya HOM05D005096 ORTHO05D006566 7.8e-71 273.1 275 53.1
Migut.D00341 Erythranthe guttata HOM05D005096 ORTHO05D006566 1.0e-62 246.1 455 42.0
Potri.002G053332 Populus trichocarpa HOM05D005096 ORTHO05D006566 2.8e-60 238.0 256 51.2
Hund05340 Selenicereus undatus HOM05D005096 ORTHO05D006566 6.0e-55 220.3 179 59.8
MD11G1311600 Malus domestica HOM05D005096 ORTHO05D006566 2.3e-54 218.4 193 62.2
MD11G1311400 Malus domestica HOM05D005096 ORTHO05D006566 2.9e-49 201.4 380 39.7
SEGI_14404 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 2.5e-45 188.3 334 40.7
Sabra05G0150000 Salix brachista HOM05D005096 ORTHO05D006566 1.8e-43 182.2 164 56.7
SEGI_13636 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 6.9e-43 180.3 239 46.0
Potri.002G053366 Populus trichocarpa HOM05D005096 ORTHO05D006566 4.9e-41 174.1 175 54.3
SEGI_20481 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 3.7e-36 157.9 177 44.1
Cpa.g.c44243 Carica papaya HOM05D005096 ORTHO05D006566 5.5e-32 144.1 132 59.8
Cpa.g.sc370.1 Carica papaya HOM05D005096 ORTHO05D006566 2.1e-31 142.1 131 61.1
MD00G1063200 Malus domestica HOM05D005096 ORTHO05D006566 2.7e-31 141.7 125 63.2
PGSC0003DMG400012881 Solanum tuberosum HOM05D005096 ORTHO05D006566 2.4e-27 128.6 173 48.6
arahy.Tifrunner.gnm1.ann1.VTSW9N Arachis hypogaea HOM05D005096 ORTHO05D006566 1.2e-26 126.3 132 52.3
Glyma.18G167550 Glycine max HOM05D005096 ORTHO05D006566 1.5e-26 125.9 97 68.0
TAR362G0796 Trochodendron aralioides HOM05D005096 ORTHO05D006566 5.0e-25 120.9 95 70.5
Hund05341 Selenicereus undatus HOM05D005096 ORTHO05D006566 2.9e-17 95.1 63 76.2
arahy.Tifrunner.gnm1.ann1.X3UYKF Arachis hypogaea HOM05D005525 ORTHO05D006341 8.5e-17 93.6 95 55.8
arahy.Tifrunner.gnm1.ann1.BB9JSJ Arachis hypogaea HOM05D000384 ORTHO05D000468 1.6e-15 89.4 92 54.3
arahy.Tifrunner.gnm1.ann1.K3B567 Arachis hypogaea HOM05D005525 ORTHO05D006341 3.0e-14 85.1 141 41.8
arahy.Tifrunner.gnm1.ann1.Y3S9ZW Arachis hypogaea HOM05D005525 ORTHO05D006341 3.9e-14 84.7 119 47.1
SEGI_37612 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 6.7e-14 84.0 198 28.3
MD11G1311300 Malus domestica HOM05D005096 ORTHO05D006566 9.7e-13 80.1 68 60.3
SEGI_24308 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 8.2e-12 77.0 55 69.1
SEGI_40401 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 9.1e-11 73.6 104 42.3
Hma1.2p1_0536F.1_g174110 Hydrangea macrophylla HOM05D005096 ORTHO05D006214 1.3e-09 69.7 80 50.0


User provided reference genes

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