Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO266G0027 Papaver somniferum HOM05D004253 ORTHO05D005013 1.1e-57 226.5 123 100.0
PSO349G0271 Papaver somniferum HOM05D004253 ORTHO05D005013 7.2e-12 74.3 44 84.1
PSO017G1341 Papaver somniferum HOM05D004253 ORTHO05D005013 2.7e-11 72.4 44 81.8
FAN05G3841 Fragaria x ananassa HOM05D004253 ORTHO05D005013 1.4e-10 70.1 46 76.1
Sabra16G0129900 Salix brachista HOM05D004253 ORTHO05D005013 1.4e-10 70.1 44 79.5
FvH4_6g10490 Fragaria vesca HOM05D004253 ORTHO05D005013 1.8e-10 69.7 44 79.5
FAN05G1507 Fragaria x ananassa HOM05D004253 ORTHO05D005013 1.8e-10 69.7 44 79.5
FAN09G3783 Fragaria x ananassa HOM05D004253 ORTHO05D005013 1.8e-10 69.7 44 79.5
FAN14G5304 Fragaria x ananassa HOM05D004253 ORTHO05D005013 1.8e-10 69.7 44 79.5
RcHm_v2.0_Chr3g0461441 Rosa chinensis HOM05D004253 ORTHO05D005013 1.8e-10 69.7 44 79.5
RcHm_v2.0_Chr3g0461451 Rosa chinensis HOM05D004253 ORTHO05D005013 1.8e-10 69.7 44 79.5
Gohir.A01G170500 Gossypium hirsutum HOM05D004253 ORTHO05D005013 3.9e-10 68.6 44 77.3
Gorai.002G200200 Gossypium raimondii HOM05D004253 ORTHO05D005013 3.9e-10 68.6 44 77.3
PSO349G0244 Papaver somniferum HOM05D004253 ORTHO05D005013 3.9e-10 68.6 44 79.5
FAN02G2747 Fragaria x ananassa HOM05D004253 ORTHO05D005013 5.1e-10 68.2 44 77.3
Lj3C944T3 Lonicera japonica HOM05D004253 ORTHO05D005013 5.1e-10 68.2 46 73.9
GSVIVG01030250001 Vitis vinifera HOM05D004253 ORTHO05D005013 5.1e-10 68.2 46 73.9
Dinv25280 Davidia involucrata HOM05D004253 ORTHO05D005013 6.7e-10 67.8 44 77.3
Manes.09G113100 Manihot esculenta HOM05D004253 ORTHO05D005013 6.7e-10 67.8 44 79.5
TWI74G0689 Tripterygium wilfordii HOM05D004253 ORTHO05D005013 6.7e-10 67.8 46 73.9
GSVIVG01030252001 Vitis vinifera HOM05D004253 ORTHO05D005013 6.7e-10 67.8 44 77.3
EL10Ac7g17016 Beta vulgaris HOM05D004253 ORTHO05D005013 8.8e-10 67.4 44 75.0
Sc02g0000650 Simmondsia chinensis HOM05D004253 ORTHO05D005013 8.8e-10 67.4 44 75.0
Gohir.D01G161500 Gossypium hirsutum HOM05D004253 ORTHO05D005013 1.1e-09 67.0 44 75.0
Peaxi162Scf00264g00861 Petunia axillaris HOM05D004253 ORTHO05D005013 1.1e-09 67.0 44 77.3
PGR031G1936 Punica granatum HOM05D004253 ORTHO05D005013 1.1e-09 67.0 44 75.0
Ciclev10011564m.g Citrus clementina HOM05D004253 ORTHO05D005013 1.5e-09 66.6 44 77.3
Prupe.6G286200 Prunus persica HOM05D004253 ORTHO05D005013 1.5e-09 66.6 44 75.0
CARHR209750 Cardamine hirsuta HOM05D004253 ORTHO05D005013 2.0e-09 66.2 44 77.3
Cfa017100 Carpinus fangiana HOM05D004253 ORTHO05D005013 2.0e-09 66.2 44 75.0
COL.COLO4_14437 Corchorus olitorius HOM05D004253 ORTHO05D005013 2.0e-09 66.2 44 75.0
PGSC0003DMG400011865 Solanum tuberosum HOM05D004253 ORTHO05D005013 2.0e-09 66.2 46 71.7
Solyc10g076280.3 Solanum lycopersicum HOM05D004253 ORTHO05D005013 2.6e-09 65.9 44 75.0
Sopen10g027900 Solanum pennellii HOM05D004253 ORTHO05D005013 2.6e-09 65.9 44 75.0
Eucgr.A00629 Eucalyptus grandis HOM05D004253 ORTHO05D005013 3.3e-09 65.5 46 69.6
Eucgr.A00632 Eucalyptus grandis HOM05D004253 ORTHO05D005013 3.3e-09 65.5 46 69.6
MD12G1181400 Malus domestica HOM05D004253 ORTHO05D005013 3.3e-09 65.5 44 75.0
Nn2g13286 Nelumbo nucifera HOM05D004253 ORTHO05D005013 3.3e-09 65.5 44 75.0
Nn5g27904 Nelumbo nucifera HOM05D004253 ORTHO05D005013 3.3e-09 65.5 44 75.0
Hund19850 Selenicereus undatus HOM05D004253 ORTHO05D005013 3.3e-09 65.5 44 75.0
TAR633G0963 Trochodendron aralioides HOM05D004253 ORTHO05D005013 3.3e-09 65.5 44 75.0
AL6G13070 Arabidopsis lyrata HOM05D004253 ORTHO05D005013 4.4e-09 65.1 44 75.0
AT5G03570 Arabidopsis thaliana HOM05D004253 ORTHO05D005013 4.4e-09 65.1 44 75.0
EL10Ac7g16784 Beta vulgaris HOM05D004253 ORTHO05D005013 4.4e-09 65.1 44 72.7
EL10As8g23831 Beta vulgaris HOM05D004253 ORTHO05D005013 4.4e-09 65.1 44 72.7
BcaB01g05801 Brassica carinata HOM05D004253 ORTHO05D005013 4.4e-09 65.1 44 75.0
BcaB01g05813 Brassica carinata HOM05D004253 ORTHO05D005013 4.4e-09 65.1 44 75.0
A03p01250 Brassica napus HOM05D004253 ORTHO05D005013 4.4e-09 65.1 44 75.0
C03p01610 Brassica napus HOM05D004253 ORTHO05D005013 4.4e-09 65.1 44 75.0
BolC3t12713H Brassica oleracea HOM05D004253 ORTHO05D005013 4.4e-09 65.1 44 75.0
BraA03t09505Z Brassica rapa HOM05D004253 ORTHO05D005013 4.4e-09 65.1 44 75.0
CAN.G955.1 Capsicum annuum HOM05D004253 ORTHO05D005013 4.4e-09 65.1 44 75.0
Thhalv10013299m.g Eutrema salsugineum HOM05D004253 ORTHO05D005013 4.4e-09 65.1 44 75.0
Thecc.05G005300 Theobroma cacao HOM05D004253 ORTHO05D005013 4.4e-09 65.1 44 75.0
ATR0594G059 Amborella trichopoda HOM05D004253 ORTHO05D005013 5.7e-09 64.7 44 72.7
AUR62006302 Chenopodium quinoa HOM05D004253 ORTHO05D005013 5.7e-09 64.7 44 72.7
AUR62026347 Chenopodium quinoa HOM05D004253 ORTHO05D005013 5.7e-09 64.7 44 72.7
Cc00_g33920 Coffea canephora HOM05D004253 ORTHO05D005013 5.7e-09 64.7 44 72.7
Cc06_g00690 Coffea canephora HOM05D004253 ORTHO05D005013 5.7e-09 64.7 44 72.7
Duzib177G0173 Durio zibethinus HOM05D004253 ORTHO05D005013 5.7e-09 64.7 44 77.3
QL07p033645 Quercus lobata HOM05D004253 ORTHO05D005013 5.7e-09 64.7 44 77.3
Sed0018512 Sechium edule HOM05D004253 ORTHO05D005013 5.7e-09 64.7 44 72.7
TWI53G0484 Tripterygium wilfordii HOM05D004253 ORTHO05D005013 5.7e-09 64.7 46 71.7
Aa31LG1G21620 Aethionema arabicum HOM05D004253 ORTHO05D005013 7.4e-09 64.3 44 72.7
CiPaw.09G216400 Carya illinoinensis HOM05D004253 ORTHO05D005013 7.4e-09 64.3 44 72.7
MBI15_g03641_MAGBIO Magnolia biondii HOM05D004253 ORTHO05D005013 7.4e-09 64.3 44 72.7
THA.LOC104806636 Tarenaya hassleriana HOM05D004253 ORTHO05D005013 7.4e-09 64.3 44 72.7
Atru.chr8.2352 Acer truncatum HOM05D004253 ORTHO05D005013 9.7e-09 63.9 44 75.0
Oeu026968.1 Olea europaea HOM05D004253 ORTHO05D005013 9.7e-09 63.9 46 69.6
Rhsim05G0226800 Rhododendron simsii HOM05D004253 ORTHO05D005013 9.7e-09 63.9 44 75.0
Actinidia29061 Actinidia chinensis HOM05D004253 ORTHO05D005013 1.3e-08 63.5 44 75.0
BcaB02g09172 Brassica carinata HOM05D004253 ORTHO05D005013 1.3e-08 63.5 44 72.7
Nitab4.5_0000355g0170 Nicotiana tabacum HOM05D004253 ORTHO05D005013 1.3e-08 63.5 44 75.0
Nitab4.5_0012987g0010 Nicotiana tabacum HOM05D004253 ORTHO05D005013 1.3e-08 63.5 44 75.0
vmacro20334 Vaccinium macrocarpon HOM05D004253 ORTHO05D005013 1.3e-08 63.5 44 75.0
AL4G35730 Arabidopsis lyrata HOM05D004253 ORTHO05D005013 1.7e-08 63.2 44 75.0
BcaC02g11997 Brassica carinata HOM05D004253 ORTHO05D005013 1.7e-08 63.2 44 72.7
A05p07590 Brassica napus HOM05D004253 ORTHO05D005013 1.7e-08 63.2 44 72.7
C04p09070 Brassica napus HOM05D004253 ORTHO05D005013 1.7e-08 63.2 44 72.7
BraA05t19726Z Brassica rapa HOM05D004253 ORTHO05D005013 1.7e-08 63.2 44 72.7
CSS0015068 Camellia sinensis var. sinensis HOM05D004253 ORTHO05D005013 1.7e-08 63.2 44 72.7
Haze_21100 Corylus avellana HOM05D004253 ORTHO05D005013 1.7e-08 63.2 44 75.0
MELO3C026034.2 Cucumis melo HOM05D004253 ORTHO05D005013 1.7e-08 63.2 44 70.5
CsaV3_4G026660 Cucumis sativus L. HOM05D004253 ORTHO05D005013 1.7e-08 63.2 44 70.5
Hma1.2p1_0501F.1_g167250 Hydrangea macrophylla HOM05D004253 ORTHO05D005013 1.7e-08 63.2 44 70.5
Sp6g39180 Schrenkiella parvula HOM05D004253 ORTHO05D005013 1.7e-08 63.2 44 72.7
Sed0023395 Sechium edule HOM05D004253 ORTHO05D005013 1.7e-08 63.2 44 70.5
Thecc.05G005200 Theobroma cacao HOM05D004253 ORTHO05D005013 1.7e-08 63.2 44 72.7
CiPaw.09G216200 Carya illinoinensis HOM05D004253 ORTHO05D005013 2.2e-08 62.8 44 70.5
RcHm_v2.0_Chr6g0247161 Rosa chinensis HOM05D004253 ORTHO05D005013 2.2e-08 62.8 44 72.7
AT2G38460 Arabidopsis thaliana HOM05D004253 ORTHO05D005013 3.7e-08 62.0 44 72.7
BcaNung02099 Brassica carinata HOM05D004253 ORTHO05D005013 3.7e-08 62.0 44 70.5
C07p40260 Brassica napus HOM05D004253 ORTHO05D005013 3.7e-08 62.0 44 70.5
BolC7t44561H Brassica oleracea HOM05D004253 ORTHO05D005013 3.7e-08 62.0 44 70.5
CSS0016892 Camellia sinensis var. sinensis HOM05D004253 ORTHO05D005013 3.7e-08 62.0 44 72.7
Carub.0004s2043 Capsella rubella HOM05D004253 ORTHO05D005013 3.7e-08 62.0 44 72.7
Carub.0006s0241 Capsella rubella HOM05D004253 ORTHO05D005013 3.7e-08 62.0 44 70.5
Cpa.g.sc5.254 Carica papaya HOM05D004253 ORTHO05D005013 3.7e-08 62.0 44 70.5
Eucgr.A00634 Eucalyptus grandis HOM05D004253 ORTHO05D005013 3.7e-08 62.0 52 61.5
Thhalv10016525m.g Eutrema salsugineum HOM05D004253 ORTHO05D005013 3.7e-08 62.0 44 72.7
Potri.016G128600 Populus trichocarpa HOM05D004253 ORTHO05D005013 3.7e-08 62.0 46 69.6
CDE04G3038 Ceratophyllum demersum HOM05D004253 ORTHO05D005013 4.8e-08 61.6 44 68.2
ClCG04G006590 Citrullus lanatus HOM05D004253 ORTHO05D005013 4.8e-08 61.6 44 68.2
HanXRQChr15g0463391 Helianthus annuus HOM05D004253 ORTHO05D005013 4.8e-08 61.6 45 68.9
Sp4g20780 Schrenkiella parvula HOM05D004253 ORTHO05D005013 4.8e-08 61.6 44 72.7
COL.COLO4_17446 Corchorus olitorius HOM05D004253 ORTHO05D005013 6.3e-08 61.2 44 75.0
Os06g0560000 Oryza sativa ssp. japonica HOM05D004253 ORTHO05D005013 8.2e-08 60.8 44 70.5
SGA_v2.0_scaffold85G26671 Striga asiatica HOM05D004253 ORTHO05D005013 8.2e-08 60.8 44 70.5
Aa31sc114G20 Aethionema arabicum HOM05D004253 ORTHO05D005013 1.1e-07 60.5 44 72.7
MSTRG.18968 Avicennia marina HOM05D004253 ORTHO05D005013 1.1e-07 60.5 44 70.5
CARHR133140 Cardamine hirsuta HOM05D004253 ORTHO05D005013 1.1e-07 60.5 44 70.5
SEGI_11914 Sequoiadendron giganteum HOM05D004253 ORTHO05D005013 1.1e-07 60.5 46 67.4
Zm00001eb384340 Zea mays HOM05D004253 ORTHO05D005013 1.1e-07 60.5 44 70.5
Eucgr.A00635 Eucalyptus grandis HOM05D004253 ORTHO05D005013 1.4e-07 60.1 44 72.7
DCAR_023991 Daucus carota HOM05D004253 ORTHO05D005013 1.8e-07 59.7 44 70.5
ECA247G0592 Erigeron canadensis HOM05D004253 ORTHO05D005013 2.4e-07 59.3 46 65.2
HanXRQChr10g0287841 Helianthus annuus HOM05D004253 ORTHO05D005013 2.4e-07 59.3 46 65.2
HPP92_012007 Vanilla planifolia HOM05D004253 ORTHO05D005013 2.4e-07 59.3 44 68.2
HPP92_012012 Vanilla planifolia HOM05D004253 ORTHO05D005013 2.4e-07 59.3 44 68.2
Zm00001eb384360 Zea mays HOM05D004253 ORTHO05D005013 3.1e-07 58.9 44 68.2
Aqoxy4G02184 Aquilegia oxysepala HOM05D004253 ORTHO05D005013 4.1e-07 58.5 44 65.9
Migut.J00086 Erythranthe guttata HOM05D004253 ORTHO05D005013 4.1e-07 58.5 44 68.2
Glyma.03G042400 Glycine max HOM05D004253 ORTHO05D005013 1.2e-06 57.0 44 68.2
VMungo0331G0711 Vigna mungo HOM05D004253 ORTHO05D005013 1.2e-06 57.0 44 68.2
Eucgr.A00630 Eucalyptus grandis HOM05D004253 ORTHO05D005013 1.5e-06 56.6 44 63.6
Phvul.010G062200 Phaseolus vulgaris HOM05D004253 ORTHO05D005013 2.6e-06 55.8 44 65.9
Lalb_Chr13g0291391 Lupinus albus HOM05D004253 ORTHO05D005013 3.4e-06 55.5 46 63.0
Medtr4g013240 Medicago truncatula HOM05D004253 ORTHO05D005013 3.4e-06 55.5 46 63.0
Lj3g0027471 Lotus japonicus HOM05D004253 ORTHO05D005013 4.5e-06 55.1 44 65.9
Lsat_1_v5_gn_9_37021 Lactuca sativa HOM05D004253 ORTHO05D005013 5.9e-06 54.7 46 60.9
CANSAT35G1695 Cannabis sativa HOM05D004253 ORTHO05D005013 7.7e-06 54.3 44 65.9
Lj3g0011406 Lotus japonicus HOM05D004253 ORTHO05D005013 7.7e-06 54.3 44 65.9
Psat7g249920 Pisum sativum HOM05D004253 ORTHO05D005013 7.7e-06 54.3 46 60.9


User provided reference genes

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