Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 0.0e+00 1082.0 600 100.0
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 1.7e-279 965.7 617 87.8
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 2.9e-138 496.5 626 47.1
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 5.4e-137 492.3 646 46.7
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 1.2e-131 474.6 597 48.6
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 1.4e-129 467.6 620 46.8
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 3.7e-122 443.0 614 43.8
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 4.9e-122 442.6 617 45.2
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 8.3e-122 441.8 609 45.6
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 7.3e-118 428.7 599 45.2
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 1.6e-117 427.6 603 46.1
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 3.4e-115 419.9 609 43.7
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 9.2e-113 411.8 613 44.4
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 9.2e-113 411.8 610 43.3
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 6.0e-112 409.1 610 44.3
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 5.1e-111 406.0 605 43.1
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 4.3e-110 402.9 620 42.6
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 7.3e-110 402.1 628 43.3
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 1.3e-109 401.4 628 43.2
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 1.3e-109 401.4 609 43.2
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 4.8e-109 399.4 606 43.4
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 4.8e-109 399.4 672 41.1
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 1.4e-108 397.9 566 44.2
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 3.1e-108 396.7 609 42.9
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 4.0e-108 396.4 600 42.2
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 6.9e-108 395.6 607 43.2
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 2.6e-107 393.7 605 43.6
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 4.4e-107 392.9 699 40.6
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 1.7e-106 391.0 612 40.8
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 8.4e-106 388.7 597 42.4
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.1e-105 388.3 615 42.0
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 1.1e-105 388.3 602 42.0
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 1.4e-105 387.9 602 42.0
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 1.4e-105 387.9 574 43.7
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 2.4e-105 387.1 624 42.0
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 7.1e-105 385.6 606 42.9
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 2.1e-104 384.0 599 43.2
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 4.6e-104 382.9 595 42.7
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 1.7e-103 380.9 611 41.2
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 8.7e-103 378.6 598 41.0
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 8.7e-103 378.6 602 40.5
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 1.9e-102 377.5 625 40.3
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 1.3e-101 374.8 617 40.8
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 3.6e-101 373.2 605 41.8
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 8.1e-101 372.1 602 43.0
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 1.1e-100 371.7 603 41.5
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 5.3e-100 369.4 610 40.3
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 6.9e-100 369.0 613 40.6
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 1.5e-99 367.9 603 40.3
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 4.9e-98 362.8 608 41.1
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 2.4e-97 360.5 572 44.6
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 5.4e-97 359.4 611 39.8
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 7.1e-97 359.0 604 41.7
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 4.6e-96 356.3 597 42.2
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 7.4e-94 349.0 603 40.8
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 5.3e-92 342.8 636 39.6
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 2.6e-91 340.5 596 40.3
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 4.5e-91 339.7 645 38.0
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 1.0e-90 338.6 603 39.1
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 6.4e-90 335.9 530 41.3
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 9.3e-89 332.0 598 36.8
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 1.2e-88 331.6 610 38.5
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 4.6e-88 329.7 587 39.5
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 2.3e-87 327.4 526 42.6
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 2.3e-87 327.4 526 41.8
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 3.9e-87 326.6 613 37.8
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 5.1e-87 326.2 550 40.7
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 1.1e-86 325.1 596 38.6
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 1.1e-86 325.1 628 38.1
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.1e-86 325.1 628 38.1
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.5e-86 324.7 575 39.0
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 7.4e-86 322.4 601 36.8
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 1.3e-85 321.6 603 38.3
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 1.6e-85 321.2 623 37.6
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.1e-85 320.9 628 37.7
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 3.7e-85 320.1 597 37.5
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 6.2e-85 319.3 601 38.8
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 2.4e-84 317.4 597 37.9
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 2.4e-84 317.4 600 37.8
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 3.1e-84 317.0 600 37.8
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.1e-84 317.0 625 37.3
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 5.3e-84 316.2 605 38.0
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 8.4e-82 308.9 606 36.8
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 4.2e-81 306.6 607 38.1
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 5.5e-81 306.2 644 34.8
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 6.1e-80 302.8 569 38.3
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 2.3e-79 300.8 289 55.7
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 2.5e-78 297.4 616 35.9
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 9.7e-78 295.4 601 36.3
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 2.8e-77 293.9 600 35.5
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 3.7e-77 293.5 600 36.5
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 3.7e-77 293.5 600 36.5
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 3.7e-77 293.5 600 36.5
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 1.2e-75 288.5 302 53.0
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.0e-74 285.4 572 36.9
Actinidia20159 Actinidia chinensis HOM05D004687 ORTHO05D006002 1.7e-74 284.6 629 35.5
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 3.2e-73 280.4 504 38.3
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 4.2e-73 280.0 622 36.7
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 1.8e-71 274.6 613 33.6
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 6.7e-71 272.7 641 35.6
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 8.8e-71 272.3 625 34.6
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 8.8e-71 272.3 295 52.5
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 8.8e-71 272.3 612 33.8
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 2.0e-70 271.2 525 36.8
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 2.8e-69 267.3 519 38.2
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 4.8e-69 266.5 594 32.3
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 4.8e-69 266.5 591 32.8
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 2.6e-67 260.8 385 44.4
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 3.8e-66 256.9 514 36.2
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 1.4e-65 255.0 608 32.4
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 5.5e-65 253.1 603 34.2
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 1.3e-61 241.9 234 56.0
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 8.5e-58 229.2 461 39.0
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 1.1e-57 228.8 540 36.7
Pp3c23_12760 Physcomitrium patens HOM05D004687 ORTHO05D006002 1.7e-53 214.9 634 31.1
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.1e-52 210.3 269 46.1
Nitab4.5_0002262g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.2e-51 208.8 295 45.1
FAN01G0098 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.5e-51 207.2 537 33.5
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 5.9e-51 206.5 585 36.6
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 8.5e-50 202.6 585 36.4
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 2.1e-48 198.0 588 34.7
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.0e-47 194.1 588 34.7
SGA_v2.0_scaffold95G28804 Striga asiatica HOM05D004687 ORTHO05D006002 1.4e-44 185.3 286 39.5
SMO147G0044 Selaginella moellendorffii HOM05D004687 ORTHO05D006002 5.4e-44 183.3 277 38.6
CDE11G0743 Ceratophyllum demersum HOM05D002440 ORTHO05D002576 2.7e-40 171.0 437 33.0
Potri.002G164000 Populus trichocarpa HOM05D004687 ORTHO05D006002 5.2e-39 166.8 291 39.5
FAN03G2011 Fragaria x ananassa HOM05D004687 ORTHO05D006002 9.8e-38 162.5 444 33.3
Nitab4.5_0003779g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.2e-35 155.6 257 41.6
FAN23G1626 Fragaria x ananassa HOM05D004687 ORTHO05D006002 7.7e-35 152.9 270 37.8
MD01G1071100 Malus domestica HOM05D004687 ORTHO05D006002 6.1e-32 143.3 103 69.9
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 4.0e-31 140.6 126 53.2
SHI13366 Sapria himalayana HOM05D004687 ORTHO05D006002 1.5e-30 138.7 157 45.2
Sopen01g038880 Solanum pennellii HOM05D004687 ORTHO05D006002 1.8e-28 131.7 353 32.0
QL06p033484 Quercus lobata HOM05D004687 ORTHO05D006002 4.6e-27 127.1 118 50.8
vmacro13233 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 1.3e-26 125.6 138 50.7
CBR_g45680 Chara braunii HOM05D004687 ORTHO05D006002 3.9e-26 124.0 290 29.7
Lalb_Chr17g0339031 Lupinus albus HOM05D004687 ORTHO05D006002 1.5e-25 122.1 380 30.0
PSO541G1518 Papaver somniferum HOM05D004687 ORTHO05D006002 2.3e-23 114.8 163 44.8
Actinidia20138 Actinidia chinensis HOM05D004687 ORTHO05D006002 1.3e-21 109.0 116 52.6
SHI13367 Sapria himalayana HOM05D004687 ORTHO05D006002 1.3e-21 109.0 439 27.8
Aa31sc194G60 Aethionema arabicum HOM05D004687 ORTHO05D006002 8.3e-21 106.3 140 45.7
COL.COLO4_21921 Corchorus olitorius HOM05D004687 ORTHO05D006002 1.9e-17 95.1 102 47.1
ATR0804G028 Amborella trichopoda HOM05D004687 ORTHO05D006002 1.2e-16 92.4 131 43.5
Actinidia10067 Actinidia chinensis HOM05D004687 ORTHO05D006002 2.1e-16 91.7 417 27.3
Mapoly0091s0017 Marchantia polymorpha HOM05D004687 ORTHO05D006002 8.9e-15 86.3 290 26.6
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 7.8e-11 73.2 105 39.0
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 1.2e-08 65.9 172 26.7
Ca_03421_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 1.5e-06 58.9 123 37.4
BraA03t10099Z Brassica rapa HOM05D004687 ORTHO05D016135 7.6e-06 56.6 70 45.7
A03p47890 Brassica napus HOM05D004687 ORTHO05D016135 9.9e-06 56.2 70 45.7


User provided reference genes

Program Settings