Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO238G0034 Papaver somniferum HOM05D004234 ORTHO05D004670 1.5e-259 899.0 456 100.0
PSO210G3536 Papaver somniferum HOM05D004234 ORTHO05D004670 1.7e-236 822.4 456 92.8
Aqoxy5G04150 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 5.1e-180 634.8 453 73.7
Aqoxy1G01638 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 1.9e-179 632.9 453 73.5
Nn6g33942 Nelumbo nucifera HOM05D004234 ORTHO05D004670 1.1e-177 627.1 454 73.8
Dinv06568 Davidia involucrata HOM05D004234 ORTHO05D004670 6.9e-177 624.4 459 72.5
GSVIVG01014047001 Vitis vinifera HOM05D004234 ORTHO05D004670 2.9e-175 619.0 451 71.4
CSS0018772 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 9.7e-171 604.0 454 71.1
Hma1.2p1_0432F.1_g151850 Hydrangea macrophylla HOM05D004234 ORTHO05D004670 2.8e-170 602.4 462 70.3
QL09p005405 Quercus lobata HOM05D004234 ORTHO05D004670 1.4e-169 600.1 454 69.2
TAR636G1879 Trochodendron aralioides HOM05D004234 ORTHO05D004670 1.4e-169 600.1 449 71.5
Actinidia31776 Actinidia chinensis HOM05D004234 ORTHO05D004670 5.0e-167 591.7 449 70.4
Actinidia13581 Actinidia chinensis HOM05D004234 ORTHO05D004670 1.1e-163 580.5 451 69.2
ATR0317G048 Amborella trichopoda HOM05D004234 ORTHO05D004670 2.5e-163 579.3 459 68.4
TWI39G0359 Tripterygium wilfordii HOM05D004234 ORTHO05D004670 2.5e-163 579.3 435 71.7
DCAR_014620 Daucus carota HOM05D004234 ORTHO05D004670 1.3e-162 577.0 460 67.8
Thecc.03G153900 Theobroma cacao HOM05D004234 ORTHO05D004670 1.3e-162 577.0 438 70.1
PGR042G3222 Punica granatum HOM05D004234 ORTHO05D004670 1.6e-162 576.6 461 67.2
Lj1A979T78 Lonicera japonica HOM05D004234 ORTHO05D004670 4.8e-162 575.1 430 70.7
CsaV3_3G050070 Cucumis sativus L. HOM05D004234 ORTHO05D004670 1.4e-161 573.5 472 66.5
MD01G1182200 Malus domestica HOM05D004234 ORTHO05D004670 2.4e-161 572.8 424 71.0
MD07G1252500 Malus domestica HOM05D004234 ORTHO05D004670 5.3e-161 571.6 428 70.8
Glyma.09G229600 Glycine max HOM05D004234 ORTHO05D004670 9.1e-161 570.9 440 68.9
RcHm_v2.0_Chr1g0331961 Rosa chinensis HOM05D004234 ORTHO05D004670 9.1e-161 570.9 439 70.2
HPP92_020352 Vanilla planifolia HOM05D004234 ORTHO05D004670 9.1e-161 570.9 445 68.3
Ciclev10004769m.g Citrus clementina HOM05D004234 ORTHO05D004670 1.2e-160 570.5 455 65.9
Sed0010040 Sechium edule HOM05D004234 ORTHO05D004670 1.5e-160 570.1 439 69.5
COL.COLO4_14105 Corchorus olitorius HOM05D004234 ORTHO05D004670 3.4e-160 568.9 445 69.0
SalBow8G0184 Salvia bowleyana HOM05D004234 ORTHO05D004670 4.5e-160 568.5 467 66.6
SalBow8G4519 Salvia bowleyana HOM05D004234 ORTHO05D004670 4.5e-160 568.5 467 66.6
Sopen03g024080 Solanum pennellii HOM05D004234 ORTHO05D004670 5.9e-160 568.2 446 67.0
Gohir.A03G059300 Gossypium hirsutum HOM05D004234 ORTHO05D004670 7.7e-160 567.8 455 67.9
ClCG09G013080 Citrullus lanatus HOM05D004234 ORTHO05D004670 2.2e-159 566.2 446 68.2
Manes.06G133800 Manihot esculenta HOM05D004234 ORTHO05D004670 5.0e-159 565.1 460 66.5
Solyc03g093300.3 Solanum lycopersicum HOM05D004234 ORTHO05D004670 6.5e-159 564.7 446 66.8
arahy.Tifrunner.gnm1.ann1.WXBJ4D Arachis hypogaea HOM05D004234 ORTHO05D004670 4.2e-158 562.0 442 67.6
Phvul.011G007500 Phaseolus vulgaris HOM05D004234 ORTHO05D004670 7.2e-158 561.2 449 65.7
HanXRQChr05g0142531 Helianthus annuus HOM05D004234 ORTHO05D004670 9.4e-158 560.8 451 66.5
arahy.Tifrunner.gnm1.ann1.11333K Arachis hypogaea HOM05D004234 ORTHO05D004670 1.6e-157 560.1 445 67.0
Medtr4g036835 Medicago truncatula HOM05D004234 ORTHO05D004670 3.6e-157 558.9 451 66.3
Nn1g00980 Nelumbo nucifera HOM05D004234 ORTHO05D004670 4.6e-157 558.5 453 67.3
Prupe.2G276000 Prunus persica HOM05D004234 ORTHO05D004670 4.6e-157 558.5 457 67.4
AUR62015488 Chenopodium quinoa HOM05D004234 ORTHO05D004670 1.4e-156 557.0 487 62.8
Lalb_Chr01g0000341 Lupinus albus HOM05D004234 ORTHO05D004670 1.4e-156 557.0 459 66.0
Potri.001G125700 Populus trichocarpa HOM05D004234 ORTHO05D004670 2.3e-156 556.2 470 66.4
Gohir.D03G106600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 3.0e-156 555.8 458 67.0
VMungo1127G0923 Vigna mungo HOM05D004234 ORTHO05D004670 3.0e-156 555.8 449 65.0
ECA233G5771 Erigeron canadensis HOM05D004234 ORTHO05D004670 3.9e-156 555.4 443 68.8
Sc19g0002070 Simmondsia chinensis HOM05D004234 ORTHO05D004670 5.1e-156 555.1 440 68.2
Peaxi162Scf00241g00030 Petunia axillaris HOM05D004234 ORTHO05D004670 1.5e-155 553.5 476 62.6
Oeu028187.2 Olea europaea HOM05D004234 ORTHO05D004670 2.0e-155 553.1 454 65.4
Duzib084G1335 Durio zibethinus HOM05D004234 ORTHO05D004670 2.6e-155 552.7 439 68.3
Sed0020354 Sechium edule HOM05D004234 ORTHO05D004670 3.3e-155 552.4 456 66.0
Psat7g159560 Pisum sativum HOM05D004234 ORTHO05D004670 7.4e-155 551.2 459 65.8
Sabra03G0074900 Salix brachista HOM05D004234 ORTHO05D004670 7.4e-155 551.2 446 68.4
Gorai.003G113100 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.8e-153 546.6 436 68.1
Potri.003G108000 Populus trichocarpa HOM05D004234 ORTHO05D004670 3.1e-153 545.8 464 65.7
Migut.F00484 Erythranthe guttata HOM05D004234 ORTHO05D004670 4.1e-153 545.4 419 68.7
FvH4_7g05310 Fragaria vesca HOM05D004234 ORTHO05D004670 4.1e-153 545.4 412 72.1
FAN03G3162 Fragaria x ananassa HOM05D004234 ORTHO05D004670 4.1e-153 545.4 412 72.1
Nitab4.5_0002816g0120 Nicotiana tabacum HOM05D004234 ORTHO05D004670 6.9e-153 544.7 451 65.2
Atru.chr1.756 Acer truncatum HOM05D004234 ORTHO05D004670 9.1e-153 544.3 459 65.1
FAN10G4258 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.2e-152 543.9 412 71.8
MELO3C003311.2 Cucumis melo HOM05D004234 ORTHO05D004670 1.5e-152 543.5 513 59.8
Eucgr.H04780 Eucalyptus grandis HOM05D004234 ORTHO05D004670 2.0e-152 543.1 455 66.4
Zm00001eb404400 Zea mays HOM05D004234 ORTHO05D004670 2.0e-152 543.1 447 66.4
unitig_46.g18765 Utricularia gibba HOM05D004234 ORTHO05D004670 1.0e-151 540.8 457 66.7
Lj3g0001566 Lotus japonicus HOM05D004234 ORTHO05D004670 2.9e-151 539.3 455 65.9
Cc02_g04370 Coffea canephora HOM05D004234 ORTHO05D004670 2.5e-150 536.2 469 63.5
Os03g0102400 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 7.2e-150 534.6 423 66.9
Rhsim09G0190900 Rhododendron simsii HOM05D004234 ORTHO05D004670 1.6e-149 533.5 580 55.0
Lsat_1_v5_gn_1_117561 Lactuca sativa HOM05D004234 ORTHO05D004670 3.6e-149 532.3 451 64.5
SGA_v2.0_scaffold2G01218 Striga asiatica HOM05D004234 ORTHO05D004670 3.6e-149 532.3 476 63.4
AT5G61450 Arabidopsis thaliana HOM05D004234 ORTHO05D004670 5.2e-148 528.5 425 65.4
Carub.0008s2213 Capsella rubella HOM05D004234 ORTHO05D004670 5.2e-148 528.5 439 64.9
Glyma.12G006700 Glycine max HOM05D004234 ORTHO05D004670 5.2e-148 528.5 440 65.2
Gohir.A12G198000 Gossypium hirsutum HOM05D004234 ORTHO05D004670 2.0e-147 526.6 439 64.5
Os07g0466200 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 2.6e-147 526.2 413 67.6
Gohir.D12G200600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 4.4e-147 525.4 423 66.0
Gorai.008G215700 Gossypium raimondii HOM05D004234 ORTHO05D004670 4.4e-147 525.4 423 66.0
Hund11832 Selenicereus undatus HOM05D004234 ORTHO05D004670 7.4e-147 524.6 434 66.1
Thhalv10004229m.g Eutrema salsugineum HOM05D004234 ORTHO05D004670 3.7e-146 522.3 437 65.2
AL8G38140 Arabidopsis lyrata HOM05D004234 ORTHO05D004670 8.2e-146 521.2 449 63.7
Ca_25531_v3 Cicer arietinum L. HOM05D004234 ORTHO05D004670 1.1e-145 520.8 452 63.7
Prupe.2G276100 Prunus persica HOM05D004234 ORTHO05D004670 1.1e-145 520.8 422 64.7
A03p47040 Brassica napus HOM05D004234 ORTHO05D004670 1.2e-144 517.3 437 63.6
C07p45120 Brassica napus HOM05D004234 ORTHO05D004670 1.2e-144 517.3 437 63.6
BraA03t13827Z Brassica rapa HOM05D004234 ORTHO05D004670 1.2e-144 517.3 437 63.6
EL10Ac3g05852 Beta vulgaris HOM05D004234 ORTHO05D004670 3.5e-144 515.8 453 62.0
BcaC06g33234 Brassica carinata HOM05D004234 ORTHO05D004670 4.5e-144 515.4 437 63.4
BolC7t45034H Brassica oleracea HOM05D004234 ORTHO05D004670 1.0e-143 514.2 438 62.8
Sp2g24650 Schrenkiella parvula HOM05D004234 ORTHO05D004670 5.0e-143 511.9 437 64.1
Ah.07g207720 Amaranthus hybridus HOM05D004234 ORTHO05D004670 2.3e-140 503.1 470 61.5
BcaC06g33149 Brassica carinata HOM05D004234 ORTHO05D004670 2.3e-140 503.1 436 62.6
Lsat_1_v5_gn_9_51980 Lactuca sativa HOM05D004234 ORTHO05D004670 3.3e-139 499.2 467 61.0
Nitab4.5_0003490g0020 Nicotiana tabacum HOM05D004234 ORTHO05D004670 8.5e-135 484.6 413 63.9
Mapoly0072s0015 Marchantia polymorpha HOM05D004234 ORTHO05D004670 2.7e-133 479.6 513 52.0
Aa31LG11G1950 Aethionema arabicum HOM05D004234 ORTHO05D004670 6.1e-133 478.4 449 59.5
MD07G1252600 Malus domestica HOM05D004234 ORTHO05D004670 1.0e-132 477.6 398 64.3
Pp3c17_11550 Physcomitrium patens HOM05D004234 ORTHO05D004670 3.0e-132 476.1 432 58.6
Pp3c2_13380 Physcomitrium patens HOM05D004234 ORTHO05D004670 8.3e-130 468.0 418 60.8
Lsat_1_v5_gn_8_8740 Lactuca sativa HOM05D004234 ORTHO05D004670 3.5e-128 462.6 479 56.2
RcHm_v2.0_Chr1g0374151 Rosa chinensis HOM05D004234 ORTHO05D004670 4.5e-128 462.2 408 58.6
Pp3c14_12080 Physcomitrium patens HOM05D004234 ORTHO05D004670 2.9e-127 459.5 411 60.3
AagrBONN_evm.TU.Sc2ySwM_117.258 Anthoceros agrestis HOM05D004234 ORTHO05D004670 8.6e-127 458.0 463 56.8
AUR62002211 Chenopodium quinoa HOM05D004234 ORTHO05D004670 1.1e-126 457.6 392 63.5
Medtr1g056720 Medicago truncatula HOM05D004234 ORTHO05D004670 1.1e-126 457.6 374 65.0
FvH4_7g27310 Fragaria vesca HOM05D004234 ORTHO05D004670 1.9e-126 456.8 409 58.7
FAN06G0557 Fragaria x ananassa HOM05D004234 ORTHO05D004670 4.2e-126 455.7 409 58.7
CiPaw.04G059200 Carya illinoinensis HOM05D004234 ORTHO05D004670 5.4e-121 438.7 333 70.9
Lsat_1_v5_gn_1_117520 Lactuca sativa HOM05D004234 ORTHO05D004670 1.7e-119 433.7 469 53.9
Duzib205G0275 Durio zibethinus HOM05D004234 ORTHO05D004670 3.8e-119 432.6 410 61.5
CAN.G48.41 Capsicum annuum HOM05D004234 ORTHO05D004670 2.5e-118 429.9 412 58.5
Peaxi162Scf00304g01343 Petunia axillaris HOM05D004234 ORTHO05D004670 9.5e-118 427.9 379 60.9
Nitab4.5_0000262g0110 Nicotiana tabacum HOM05D004234 ORTHO05D004670 2.8e-117 426.4 414 57.2
FAN01G2714 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.4e-116 424.1 412 60.2
FAN03G0204 Fragaria x ananassa HOM05D004234 ORTHO05D004670 4.4e-115 419.1 421 54.6
SMO357G0012 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 4.4e-115 419.1 430 54.0
FAN06G1565 Fragaria x ananassa HOM05D004234 ORTHO05D004670 8.6e-111 404.8 373 57.6
Lj8A43G57 Lonicera japonica HOM05D004234 ORTHO05D004670 4.9e-106 389.0 386 57.8
FAN10G3280 Fragaria x ananassa HOM05D002503 ORTHO05D004670 6.4e-106 388.7 378 56.1
CAN.G330.4 Capsicum annuum HOM05D004234 ORTHO05D004670 8.3e-106 388.3 363 57.3
FAN03G2107 Fragaria x ananassa HOM05D002503 ORTHO05D004670 5.4e-105 385.6 378 55.3
C07p40880 Brassica napus HOM05D004234 ORTHO05D004670 1.6e-101 374.0 381 56.7
BolC7t44614H Brassica oleracea HOM05D004234 ORTHO05D004670 6.4e-98 362.1 376 55.6
CBR_g12525 Chara braunii HOM05D004234 ORTHO05D004670 2.5e-94 350.1 587 41.1
BcaNung02453 Brassica carinata HOM05D004234 ORTHO05D004670 1.9e-89 334.0 349 54.4
FAN10G1071 Fragaria x ananassa HOM05D004234 ORTHO05D004670 6.6e-87 325.5 407 47.4
Solyc06g034180.2 Solanum lycopersicum HOM05D004234 ORTHO05D004670 2.5e-86 323.6 337 54.6
PGSC0003DMG400021593 Solanum tuberosum HOM05D004234 ORTHO05D004670 4.9e-82 309.3 372 48.1
Sabra01G0096800 Salix brachista HOM05D004234 ORTHO05D004670 3.2e-81 306.6 295 59.7
SMO203G0101 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 2.1e-80 303.9 322 51.2
arahy.Tifrunner.gnm1.ann1.EHKS3S Arachis hypogaea HOM05D004234 ORTHO05D004670 5.8e-75 285.8 307 54.4
CARHR275210 Cardamine hirsuta HOM05D004234 ORTHO05D004670 2.9e-74 283.5 274 56.9
Nitab4.5_0000448g0090 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.4e-65 254.6 292 49.0
Lsat_1_v5_gn_1_117540 Lactuca sativa HOM05D004234 ORTHO05D004670 1.2e-64 251.5 306 48.4
Cpa.g.sc4200.1 Carica papaya HOM05D004234 ORTHO05D004670 7.6e-59 232.3 121 92.6
vmacro09913 Vaccinium macrocarpon HOM05D004234 ORTHO05D004670 9.3e-57 225.3 254 55.9
SHI13981 Sapria himalayana HOM05D004234 ORTHO05D004670 6.7e-55 219.2 276 49.3
Cre03.g201000 Chlamydomonas reinhardtii HOM05D004234 ORTHO05D004670 1.1e-46 191.8 332 35.2
Sopen06g015930 Solanum pennellii HOM05D004234 ORTHO05D000001 4.3e-46 189.9 240 46.7
CSS0026342 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 1.8e-44 184.5 130 76.9
Haze_13877 Corylus avellana HOM05D004234 ORTHO05D004670 3.4e-43 180.3 194 52.1
arahy.Tifrunner.gnm1.ann1.J8KP6L Arachis hypogaea HOM05D004234 ORTHO05D004670 1.1e-38 165.2 153 61.4
arahy.Tifrunner.gnm1.ann1.AYL6ZU Arachis hypogaea HOM05D004234 ORTHO05D004670 2.6e-35 154.1 154 60.4
Cpa.g.c29748.2 Carica papaya HOM05D004234 ORTHO05D004670 5.0e-34 149.8 98 82.7
FvH4_2g12100 Fragaria vesca HOM05D004234 ORTHO05D004670 1.4e-28 131.7 108 63.9
BolC1t03363H Brassica oleracea HOM05D004234 ORTHO05D004670 9.4e-25 119.0 74 73.0
FvH4_c2g00051 Fragaria vesca HOM05D004234 ORTHO05D004670 1.2e-24 118.6 111 63.1
arahy.Tifrunner.gnm1.ann1.F7NEP8 Arachis hypogaea HOM05D004234 ORTHO05D004670 2.1e-24 117.9 155 49.0
SEGI_04441 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 1.5e-22 111.7 66 86.4
SEGI_33806 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 3.7e-21 107.1 71 67.6
Dinv16843 Davidia involucrata HOM05D004234 ORTHO05D004670 8.3e-21 105.9 69 72.5
FvH4_3g27272 Fragaria vesca HOM05D004234 ORTHO05D004670 8.3e-21 105.9 104 60.6
SEGI_30601 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 9.1e-20 102.4 58 84.5
Haze_13878 Corylus avellana HOM05D004234 ORTHO05D004670 1.7e-18 98.2 76 67.1
Gorai.011G181500 Gossypium raimondii HOM05D001733 ORTHO05D004670 4.2e-17 93.6 51 84.3
Migut.L01142 Erythranthe guttata HOM05D004234 ORTHO05D004670 5.5e-17 93.2 94 50.0
Cpa.g.sc111.54 Carica papaya HOM05D004234 ORTHO05D004670 6.1e-16 89.7 150 40.7
FvH4_5g28373 Fragaria vesca HOM05D004234 ORTHO05D004670 8.0e-16 89.4 145 45.5
Gorai.009G415200 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.8e-15 88.2 51 82.4
Lsat_1_v5_gn_5_94641 Lactuca sativa HOM05D004234 ORTHO05D004670 4.0e-15 87.0 76 55.3
Gorai.012G056500 Gossypium raimondii HOM05D004234 ORTHO05D004670 8.8e-15 85.9 51 80.4
Actinidia24997 Actinidia chinensis HOM05D004234 ORTHO05D004670 1.2e-14 85.5 78 64.1
SEGI_09779 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 1.5e-14 85.1 72 61.1
Gohir.D04G050932 Gossypium hirsutum HOM05D004234 ORTHO05D004670 3.4e-14 84.0 55 74.5
Gohir.D11G243650 Gossypium hirsutum HOM05D001733 ORTHO05D004670 1.4e-12 78.6 51 74.5
Peaxi162Scf00304g01326 Petunia axillaris HOM05D004234 ORTHO05D004670 5.0e-10 70.1 85 56.5
PRCOL_00000881 Prasinoderma coloniale HOM05D004234 ORTHO05D004670 3.3e-09 67.4 81 54.3
Nitab4.5_0003490g0040 Nicotiana tabacum HOM05D004234 ORTHO05D004670 3.6e-08 63.9 35 80.0
Rhsim06G0134300 Rhododendron simsii HOM05D000157 ORTHO05D000311 3.6e-08 63.9 36 88.9
CDE02G0679 Ceratophyllum demersum HOM05D042044 ORTHO05D004670 3.4e-06 57.4 65 49.2


User provided reference genes

Program Settings