Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO229G0039 Papaver somniferum HOM05D006699 ORTHO05D008399 1.0e-196 689.9 355 100.0
PSO675G3944 Papaver somniferum HOM05D006699 ORTHO05D008399 1.4e-185 652.9 355 94.9
CiPaw.04G132200 Carya illinoinensis HOM05D006699 ORTHO05D008399 9.6e-126 454.1 342 66.4
Dinv15443 Davidia involucrata HOM05D006699 ORTHO05D008399 8.1e-125 451.1 344 68.3
QL08p041638 Quercus lobata HOM05D006699 ORTHO05D008399 2.6e-123 446.0 343 66.8
TAR626G0153 Trochodendron aralioides HOM05D006699 ORTHO05D008399 4.5e-123 445.3 370 63.8
GSVIVG01020707001 Vitis vinifera HOM05D006699 ORTHO05D008399 5.8e-123 444.9 342 65.8
CANSAT64G2599 Cannabis sativa HOM05D006699 ORTHO05D008399 1.7e-122 443.4 344 66.9
QL08p041677 Quercus lobata HOM05D006699 ORTHO05D008399 2.2e-122 443.0 343 66.5
MD09G1238000 Malus domestica HOM05D006699 ORTHO05D008399 3.8e-122 442.2 354 65.5
MD17G1230900 Malus domestica HOM05D006699 ORTHO05D008399 4.2e-121 438.7 354 65.5
RcHm_v2.0_Chr2g0129651 Rosa chinensis HOM05D006699 ORTHO05D008399 1.6e-120 436.8 344 66.3
Eucgr.A01914 Eucalyptus grandis HOM05D006699 ORTHO05D008399 2.1e-120 436.4 351 63.8
Prupe.3G118500 Prunus persica HOM05D006699 ORTHO05D008399 6.7e-119 431.4 343 64.7
FvH4_6g27380 Fragaria vesca HOM05D006699 ORTHO05D008399 2.5e-118 429.5 347 65.4
Thecc.01G150500 Theobroma cacao HOM05D006699 ORTHO05D008399 2.5e-118 429.5 354 63.6
CSS0012388 Camellia sinensis var. sinensis HOM05D006699 ORTHO05D008399 3.3e-118 429.1 349 64.5
Lj1A681T38 Lonicera japonica HOM05D006699 ORTHO05D008399 1.3e-117 427.2 349 62.8
Cfa023335 Carpinus fangiana HOM05D006699 ORTHO05D008399 1.6e-117 426.8 343 64.1
TWI59G0496 Tripterygium wilfordii HOM05D006699 ORTHO05D008399 4.8e-117 425.2 346 63.3
arahy.Tifrunner.gnm1.ann1.GAG0UF Arachis hypogaea HOM05D006699 ORTHO05D008399 1.4e-116 423.7 354 63.3
Potri.014G142200 Populus trichocarpa HOM05D006699 ORTHO05D008399 1.8e-116 423.3 346 62.4
Haze_13371 Corylus avellana HOM05D006699 ORTHO05D008399 2.4e-116 422.9 343 63.6
arahy.Tifrunner.gnm1.ann1.0K2T49 Arachis hypogaea HOM05D006699 ORTHO05D008399 4.0e-116 422.2 354 63.0
Lj3g0015335 Lotus japonicus HOM05D006699 ORTHO05D008399 1.2e-115 420.6 344 62.8
PGR042G0843 Punica granatum HOM05D006699 ORTHO05D008399 7.6e-115 417.9 343 61.8
Sp4g13510 Schrenkiella parvula HOM05D006699 ORTHO05D008399 1.7e-114 416.8 354 61.3
PGSC0003DMG400007857 Solanum tuberosum HOM05D006699 ORTHO05D008399 2.9e-114 416.0 356 61.8
Ciclev10015418m.g Citrus clementina HOM05D006699 ORTHO05D008399 3.8e-114 415.6 355 60.6
Migut.M00261 Erythranthe guttata HOM05D006699 ORTHO05D008399 6.5e-114 414.8 344 62.8
Carub.0004s1225 Capsella rubella HOM05D006699 ORTHO05D008399 8.4e-114 414.5 343 61.5
FAN14G2123 Fragaria x ananassa HOM05D006699 ORTHO05D008399 1.4e-113 413.7 359 63.0
Glyma.06G277600 Glycine max HOM05D006699 ORTHO05D008399 1.9e-113 413.3 345 61.7
COL.COLO4_33580 Corchorus olitorius HOM05D006699 ORTHO05D008399 7.1e-113 411.4 362 60.8
Lsat_1_v5_gn_8_140640 Lactuca sativa HOM05D006699 ORTHO05D008399 9.3e-113 411.0 346 63.0
AT2G31040 Arabidopsis thaliana HOM05D006699 ORTHO05D008399 1.2e-112 410.6 343 61.8
HanXRQChr17g0557951 Helianthus annuus HOM05D006699 ORTHO05D008399 2.1e-112 409.8 338 61.8
AL4G26070 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 7.9e-112 407.9 343 61.2
CARHR124570 Cardamine hirsuta HOM05D006699 ORTHO05D008399 1.0e-111 407.5 343 60.1
CsaV3_6G018450 Cucumis sativus L. HOM05D006699 ORTHO05D008399 1.0e-111 407.5 348 61.2
Phvul.011G130500 Phaseolus vulgaris HOM05D006699 ORTHO05D008399 1.0e-111 407.5 345 62.0
AL4G26150 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 1.3e-111 407.1 343 61.2
CAN.G1049.6 Capsicum annuum HOM05D006699 ORTHO05D008399 1.3e-111 407.1 356 60.1
Peaxi162Scf00384g00423 Petunia axillaris HOM05D006699 ORTHO05D008399 1.3e-111 407.1 337 62.3
Ca_18111_v3 Cicer arietinum L. HOM05D006699 ORTHO05D008399 1.8e-111 406.8 353 62.3
VMungo1127G1340 Vigna mungo HOM05D006699 ORTHO05D008399 2.3e-111 406.4 345 61.7
Gohir.A12G086400 Gossypium hirsutum HOM05D006699 ORTHO05D008399 3.0e-111 406.0 343 61.8
BraA04t17899Z Brassica rapa HOM05D006699 ORTHO05D008399 3.9e-111 405.6 343 60.6
FAN09G4348 Fragaria x ananassa HOM05D006699 ORTHO05D008399 3.9e-111 405.6 378 60.3
A04p23730 Brassica napus HOM05D006699 ORTHO05D008399 5.1e-111 405.2 343 60.3
C04p60180 Brassica napus HOM05D006699 ORTHO05D008399 6.7e-111 404.8 343 60.9
BolC4t27520H Brassica oleracea HOM05D006699 ORTHO05D008399 6.7e-111 404.8 343 60.9
Thhalv10016897m.g Eutrema salsugineum HOM05D006699 ORTHO05D008399 8.7e-111 404.4 354 59.3
CDE10G1046 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 1.1e-110 404.1 314 64.3
Gorai.008G095400 Gossypium raimondii HOM05D006699 ORTHO05D008399 4.3e-110 402.1 343 61.5
MSTRG.15092 Avicennia marina HOM05D006699 ORTHO05D008399 7.4e-110 401.4 356 56.7
ECA233G1148 Erigeron canadensis HOM05D000006 ORTHO05D000001 7.4e-110 401.4 344 61.0
Medtr4g079850 Medicago truncatula HOM05D006699 ORTHO05D008399 7.4e-110 401.4 346 63.3
Nitab4.5_0001095g0100 Nicotiana tabacum HOM05D006699 ORTHO05D008399 7.4e-110 401.4 345 62.0
Rhsim06G0131200 Rhododendron simsii HOM05D006699 ORTHO05D008399 1.3e-109 400.6 320 64.4
ClCG02G017820 Citrullus lanatus HOM05D006699 ORTHO05D008399 2.8e-109 399.4 351 60.1
Lalb_Chr01g0006001 Lupinus albus HOM05D006699 ORTHO05D008399 3.7e-109 399.1 349 61.9
Gohir.D12G085000 Gossypium hirsutum HOM05D006699 ORTHO05D008399 2.4e-108 396.4 344 60.5
Manes.02G091200 Manihot esculenta HOM05D006699 ORTHO05D008399 6.9e-108 394.8 344 59.9
Psat7g165360 Pisum sativum HOM05D006699 ORTHO05D008399 1.3e-106 390.6 345 60.3
Solyc12g010870.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 2.2e-106 389.8 315 63.2
Sopen12g006230 Solanum pennellii HOM05D006699 ORTHO05D008399 2.9e-106 389.4 310 63.9
AUR62039018 Chenopodium quinoa HOM05D006699 ORTHO05D008399 3.8e-106 389.0 350 58.9
SGA_v2.0_scaffold9G04816 Striga asiatica HOM05D006699 ORTHO05D008399 1.9e-105 386.7 344 57.6
unitig_0.g2026 Utricularia gibba HOM05D006699 ORTHO05D008399 1.6e-104 383.6 363 54.3
PGSC0003DMG400020443 Solanum tuberosum HOM05D006699 ORTHO05D008399 3.6e-104 382.5 348 60.3
EL10Ac2g03349 Beta vulgaris HOM05D006699 ORTHO05D008399 3.9e-103 379.0 344 58.4
Nitab4.5_0000537g0130 Nicotiana tabacum HOM05D006699 ORTHO05D008399 1.1e-102 377.5 360 58.3
Actinidia11153 Actinidia chinensis HOM05D006699 ORTHO05D008399 1.5e-102 377.1 330 61.2
Sabra14G0107300 Salix brachista HOM05D006699 ORTHO05D008399 2.0e-102 376.7 342 58.5
Sopen07g027160 Solanum pennellii HOM05D006699 ORTHO05D008399 2.0e-102 376.7 341 59.5
Solyc07g055050.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 5.7e-102 375.2 341 59.2
FAN02G3357 Fragaria x ananassa HOM05D006699 ORTHO05D008399 6.9e-100 368.2 315 63.5
ATR0602G053 Amborella trichopoda HOM05D006699 ORTHO05D008399 7.7e-99 364.8 359 56.5
Nitab4.5_0011277g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 2.5e-97 359.8 359 56.0
DCAR_017060 Daucus carota HOM05D006699 ORTHO05D008399 7.2e-97 358.2 355 55.2
Os01g0673800 Oryza sativa ssp. japonica HOM05D006699 ORTHO05D008399 3.9e-95 352.4 322 58.1
Nitab4.5_0009754g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 2.2e-93 346.7 349 56.7
Aqoxy1G02064 Aquilegia oxysepala HOM05D006699 ORTHO05D008399 2.4e-92 343.2 256 69.1
Hund07812 Selenicereus undatus HOM05D006699 ORTHO05D008399 5.3e-92 342.0 357 53.2
Manes.01G133200 Manihot esculenta HOM05D006699 ORTHO05D008399 7.0e-92 341.7 286 61.5
Lju1655A0G36 Lonicera japonica HOM05D006699 ORTHO05D008399 1.7e-90 337.0 413 47.9
Aa31LG1G7380 Aethionema arabicum HOM05D006699 ORTHO05D008399 2.3e-87 326.6 365 50.7
Sc06g0009080 Simmondsia chinensis HOM05D006699 ORTHO05D008399 1.3e-85 320.9 273 59.7
Peaxi162Scf00469g00217 Petunia axillaris HOM05D006699 ORTHO05D008399 1.8e-84 317.0 334 53.0
Sed0016519 Sechium edule HOM05D006699 ORTHO05D008399 1.3e-82 310.8 355 51.5
Sed0000889 Sechium edule HOM05D006699 ORTHO05D008399 2.9e-82 309.7 284 58.1
HPP92_009665 Vanilla planifolia HOM05D006699 ORTHO05D008399 2.3e-79 300.1 391 48.1
Oeu018752.1 Olea europaea HOM05D006699 ORTHO05D008399 5.7e-78 295.4 240 62.1
TPR.G28306 Trifolium pratense HOM05D006699 ORTHO05D008399 7.0e-76 288.5 288 56.6
Eucgr.K01127 Eucalyptus grandis HOM05D006699 ORTHO05D008399 2.7e-75 286.6 347 50.1
MELO3C013567.2 Cucumis melo HOM05D006699 ORTHO05D008399 1.3e-74 284.3 235 60.9
AUR62037610 Chenopodium quinoa HOM05D006426 ORTHO05D008399 5.5e-73 278.9 229 62.9
Cc05_g08340 Coffea canephora HOM05D006699 ORTHO05D008399 1.6e-72 277.3 257 58.0
Mapoly0038s0046 Marchantia polymorpha HOM05D006699 ORTHO05D008399 2.0e-70 270.4 313 47.9
Pp3c8_13580 Physcomitrium patens HOM05D006699 ORTHO05D008399 3.7e-69 266.2 336 45.5
vmacro12376 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 3.8e-66 256.1 333 45.3
Ah.01g003530 Amaranthus hybridus HOM05D006426 ORTHO05D007737 6.8e-63 245.4 185 65.4
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 9.2e-60 235.0 287 46.0
SEGI_23271 Sequoiadendron giganteum HOM05D006699 ORTHO05D008399 4.7e-56 222.6 258 47.3
Cpa.g.sc52.174 Carica papaya HOM05D006699 ORTHO05D008399 6.8e-55 218.8 208 58.2
SMO014G0045 Selaginella moellendorffii HOM05D006699 ORTHO05D008399 4.1e-52 209.5 340 38.2
Zm00001eb360100 Zea mays HOM05D006699 ORTHO05D008399 4.1e-52 209.5 236 53.8
Atru.chr6.2796 Acer truncatum HOM05D006699 ORTHO05D008399 5.4e-52 209.1 190 58.4
Cc05_g08350 Coffea canephora HOM05D006699 ORTHO05D008399 8.9e-31 138.7 90 71.1
Ah.01g003520 Amaranthus hybridus HOM05D006699 ORTHO05D008399 5.6e-25 119.4 108 56.5
vmacro12375 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 9.6e-25 118.6 105 61.0
Atru.chr6.2795 Acer truncatum HOM05D006699 ORTHO05D008399 1.3e-24 118.2 68 80.9
Cre01.g049600 Chlamydomonas reinhardtii HOM05D006699 ORTHO05D008399 3.1e-23 113.6 297 30.6
BraA03t11005Z Brassica rapa HOM05D006699 ORTHO05D008399 6.4e-21 105.9 87 62.1
A03p17330 Brassica napus HOM05D006699 ORTHO05D008399 1.6e-19 101.3 87 59.8
PRCOL_00001453 Prasinoderma coloniale HOM05D006699 ORTHO05D008399 2.1e-19 100.9 272 30.5
CDE10G0215 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 3.3e-17 93.6 60 70.0
MCO04G044 Micromonas commoda HOM05D006699 ORTHO05D008399 8.1e-16 89.0 275 30.2
Lsat_1_v5_gn_2_38761 Lactuca sativa HOM05D006699 ORTHO05D008399 3.0e-10 70.5 77 45.5
C03p20440 Brassica napus HOM05D006699 ORTHO05D042655 3.9e-10 70.1 54 63.0
BolC3t14422H Brassica oleracea HOM05D006699 ORTHO05D042655 3.9e-10 70.1 54 63.0
Mapoly0094s0013 Marchantia polymorpha HOM05D005386 ORTHO05D006981 4.8e-08 63.2 181 29.8
SMO338G0026 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 1.1e-07 62.0 174 30.5
TPR.G33085 Trifolium pratense HOM05D006699 ORTHO05D008399 3.1e-07 60.5 36 77.8
QL01p011847 Quercus lobata HOM05D005386 ORTHO05D006981 6.9e-07 59.3 152 29.6
arahy.Tifrunner.gnm1.ann1.E6G7P2 Arachis hypogaea HOM05D005386 ORTHO05D006981 9.0e-07 58.9 153 28.8
Duzib168G0172 Durio zibethinus HOM05D005386 ORTHO05D006981 9.0e-07 58.9 150 28.7
Cfa009987 Carpinus fangiana HOM05D005386 ORTHO05D006981 1.2e-06 58.5 153 28.8
Cc01_g08820 Coffea canephora HOM05D005386 ORTHO05D006981 1.5e-06 58.2 150 30.7
CSS0011344 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 2.6e-06 57.4 149 29.5
CSS0028109 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 2.6e-06 57.4 149 29.5
Rhsim01G0203700 Rhododendron simsii HOM05D005386 ORTHO05D006981 2.6e-06 57.4 157 28.7
CANSAT54G1533 Cannabis sativa HOM05D005386 ORTHO05D006981 3.4e-06 57.0 153 30.1
Haze_23346 Corylus avellana HOM05D005386 ORTHO05D006981 4.5e-06 56.6 153 28.1
MD03G1149900 Malus domestica HOM05D005386 ORTHO05D006981 4.5e-06 56.6 153 29.4
Prupe.6G135900 Prunus persica HOM05D005386 ORTHO05D006981 5.8e-06 56.2 153 28.8
arahy.Tifrunner.gnm1.ann1.PADK5G Arachis hypogaea HOM05D005386 ORTHO05D006981 7.6e-06 55.8 129 30.2
Gohir.D05G082400 Gossypium hirsutum HOM05D005386 ORTHO05D006981 7.6e-06 55.8 150 28.7


User provided reference genes

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