Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 1.7e-86 323.2 239 100.0
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 1.1e-24 117.9 252 34.1
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 7.9e-23 111.7 244 35.2
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 1.5e-21 107.5 249 41.4
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 2.8e-20 103.2 249 41.0
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 3.7e-20 102.8 244 41.4
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 4.8e-20 102.4 255 44.3
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 8.2e-20 101.7 251 43.0
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 1.1e-19 101.3 247 31.2
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 1.1e-19 101.3 248 32.7
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 2.4e-19 100.1 231 45.9
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.4e-19 100.1 248 39.1
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 2.4e-19 100.1 248 39.1
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.2e-18 97.8 246 30.5
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 1.2e-18 97.8 243 37.9
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 1.2e-18 97.8 255 31.0
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 1.2e-18 97.8 119 48.7
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.2e-18 97.8 111 53.2
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 1.5e-18 97.4 241 32.0
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.5e-18 97.4 101 50.5
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 1.5e-18 97.4 248 40.7
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 1.5e-18 97.4 254 32.3
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 2.0e-18 97.1 252 32.9
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 2.6e-18 96.7 246 32.1
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.0e-17 94.7 241 30.7
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 1.0e-17 94.7 254 32.7
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 1.3e-17 94.4 243 31.3
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 1.3e-17 94.4 243 31.3
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 1.3e-17 94.4 240 30.0
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 1.3e-17 94.4 249 40.2
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 1.3e-17 94.4 243 30.9
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.3e-17 94.4 262 33.2
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 1.3e-17 94.4 248 29.8
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.3e-17 94.4 130 46.2
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 1.7e-17 94.0 259 29.7
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 2.9e-17 93.2 256 29.3
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 2.9e-17 93.2 277 29.2
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 3.8e-17 92.8 244 37.7
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 3.8e-17 92.8 107 49.5
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 3.8e-17 92.8 230 31.7
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 4.9e-17 92.4 246 35.8
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 4.9e-17 92.4 248 32.3
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 4.9e-17 92.4 248 32.3
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 4.9e-17 92.4 243 29.6
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 6.5e-17 92.0 248 31.0
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 6.5e-17 92.0 125 46.4
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 8.4e-17 91.7 245 29.8
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 1.1e-16 91.3 251 33.9
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.1e-16 91.3 241 31.5
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 1.4e-16 90.9 245 29.8
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 1.9e-16 90.5 242 31.4
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 1.9e-16 90.5 241 31.5
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 1.9e-16 90.5 251 34.7
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 2.5e-16 90.1 248 33.1
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 2.5e-16 90.1 257 37.0
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 3.2e-16 89.7 118 44.1
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 3.2e-16 89.7 262 29.0
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 4.2e-16 89.4 248 33.9
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 4.2e-16 89.4 246 39.0
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 5.5e-16 89.0 127 40.9
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 7.1e-16 88.6 263 28.9
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 7.1e-16 88.6 262 28.6
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.2e-15 87.8 91 51.6
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 2.7e-15 86.7 105 46.7
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 3.5e-15 86.3 91 51.6
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 3.5e-15 86.3 108 50.0
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 4.6e-15 85.9 98 48.0
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 4.6e-15 85.9 238 31.5
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 6.0e-15 85.5 110 44.5
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 6.0e-15 85.5 252 28.2
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 6.0e-15 85.5 105 46.7
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 7.9e-15 85.1 247 29.6
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 7.9e-15 85.1 254 31.1
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.0e-14 84.7 247 29.1
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 1.0e-14 84.7 245 28.6
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 1.3e-14 84.3 240 29.6
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 1.8e-14 84.0 270 33.7
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 2.3e-14 83.6 94 47.9
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 2.3e-14 83.6 123 42.3
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 3.9e-14 82.8 101 45.5
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 5.1e-14 82.4 249 28.5
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 5.1e-14 82.4 107 45.8
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 6.7e-14 82.0 103 48.5
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 1.1e-13 81.3 125 38.4
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.1e-13 81.3 121 41.3
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 1.5e-13 80.9 120 43.3
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 1.9e-13 80.5 99 46.5
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 2.5e-13 80.1 241 29.0
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 2.5e-13 80.1 224 37.9
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 2.5e-13 80.1 104 49.0
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 4.3e-13 79.3 111 44.1
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 5.7e-13 79.0 125 37.6
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 9.7e-13 78.2 250 28.4
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 1.3e-12 77.8 236 31.8
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 1.3e-12 77.8 253 34.4
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 1.3e-12 77.8 95 46.3
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 1.6e-12 77.4 99 43.4
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 2.2e-12 77.0 236 29.7
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 2.8e-12 76.6 258 25.6
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 6.3e-12 75.5 237 30.4
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 8.2e-12 75.1 96 44.8
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 1.1e-11 74.7 236 30.1
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 1.4e-11 74.3 103 48.5
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 2.4e-11 73.6 237 27.0
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 6.9e-11 72.0 231 29.4
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 6.9e-11 72.0 80 52.5
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 9.0e-11 71.6 127 38.6
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 9.0e-11 71.6 127 38.6
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 1.5e-10 70.9 121 38.0
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 2.0e-10 70.5 246 28.5
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 2.6e-10 70.1 127 37.8
ECA233G6051 Erigeron canadensis HOM05D007880 ORTHO05D003386 3.4e-10 69.7 123 37.4
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 4.5e-10 69.3 236 28.8
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 4.5e-10 69.3 139 32.4
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 5.9e-10 68.9 251 28.7
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 5.9e-10 68.9 250 28.8
PGSC0003DMG400017843 Solanum tuberosum HOM05D004742 ORTHO05D005677 1.0e-09 68.2 108 41.7
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 1.3e-09 67.8 128 37.5
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 1.3e-09 67.8 95 43.2
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 1.3e-09 67.8 128 37.5
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 1.3e-09 67.8 95 43.2
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 1.3e-09 67.8 128 37.5
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 1.3e-09 67.8 105 41.9
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 1.7e-09 67.4 107 41.1
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 2.9e-09 66.6 123 37.4
Sopen08g001110 Solanum pennellii HOM05D004742 ORTHO05D005677 3.8e-09 66.2 109 41.3
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 5.0e-09 65.9 95 42.1
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 5.0e-09 65.9 95 42.1
Solyc08g005090.2 Solanum lycopersicum HOM05D004742 ORTHO05D005677 5.0e-09 65.9 107 39.3
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 6.5e-09 65.5 242 26.0
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 6.5e-09 65.5 242 26.0
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 8.5e-09 65.1 251 27.5
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 8.5e-09 65.1 85 44.7
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 1.1e-08 64.7 124 37.1
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 1.1e-08 64.7 92 46.7
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 1.9e-08 63.9 106 40.6
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 2.5e-08 63.5 91 42.9
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 4.2e-08 62.8 42 61.9
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 5.5e-08 62.4 94 43.6
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 9.4e-08 61.6 42 66.7
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 9.4e-08 61.6 118 38.1
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 9.4e-08 61.6 64 50.0
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 1.2e-07 61.2 111 37.8
Zm00001eb072350 Zea mays HOM05D004742 ORTHO05D005677 3.6e-07 59.7 87 39.1
Os02g0693000 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 4.6e-07 59.3 83 42.2
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.8e-06 57.4 189 28.0


User provided reference genes

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