Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G7193 Papaver somniferum HOM05D005137 ORTHO05D006478 3.8e-88 328.2 168 100.0
PSO238G0018 Papaver somniferum HOM05D005137 ORTHO05D006478 5.4e-87 324.3 168 98.2
GSVIVG01023270001 Vitis vinifera HOM05D005137 ORTHO05D006478 3.7e-67 258.5 164 75.0
TAR628G0708 Trochodendron aralioides HOM05D005137 ORTHO05D006478 1.4e-66 256.5 164 73.2
Ca_16220_v3 Cicer arietinum L. HOM05D005137 ORTHO05D006478 2.4e-66 255.8 168 72.0
CSS0031544 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 6.9e-66 254.2 164 75.0
CSS0044586 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 6.9e-66 254.2 164 75.0
PSO063G4111 Papaver somniferum HOM05D005137 ORTHO05D006478 1.5e-65 253.1 171 76.0
CSS0049152 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 1.0e-64 250.4 164 73.8
Oeu021007.1 Olea europaea HOM05D005137 ORTHO05D006478 1.7e-64 249.6 164 72.6
Glyma.16G156600 Glycine max HOM05D005137 ORTHO05D006478 2.9e-64 248.8 164 70.7
Medtr3g078663 Medicago truncatula HOM05D005137 ORTHO05D006478 2.9e-64 248.8 164 71.3
CANSAT25G3131 Cannabis sativa HOM05D005137 ORTHO05D006478 3.8e-64 248.4 164 71.3
Psat5g109360 Pisum sativum HOM05D005137 ORTHO05D006478 5.0e-64 248.1 159 71.7
Oeu039592.1 Olea europaea HOM05D005137 ORTHO05D006478 6.5e-64 247.7 164 72.0
Aqoxy5G03157 Aquilegia oxysepala HOM05D005137 ORTHO05D006478 8.4e-64 247.3 161 72.7
Migut.N03340 Erythranthe guttata HOM05D005137 ORTHO05D006478 8.4e-64 247.3 164 72.0
Gohir.D05G253100 Gossypium hirsutum HOM05D005137 ORTHO05D006478 1.4e-63 246.5 164 71.3
Phvul.004G084500 Phaseolus vulgaris HOM05D005137 ORTHO05D006478 1.4e-63 246.5 164 70.1
Lj1g0006567 Lotus japonicus HOM05D005137 ORTHO05D006478 3.2e-63 245.4 164 69.5
Lalb_Chr03g0035851 Lupinus albus HOM05D005137 ORTHO05D006478 3.2e-63 245.4 164 70.1
Gohir.A05G250700 Gossypium hirsutum HOM05D005137 ORTHO05D006478 5.5e-63 244.6 164 70.7
THA.LOC104806781 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 5.5e-63 244.6 164 67.7
arahy.Tifrunner.gnm1.ann1.RF3N8D Arachis hypogaea HOM05D005137 ORTHO05D006478 7.2e-63 244.2 164 68.3
arahy.Tifrunner.gnm1.ann1.UQ6TGS Arachis hypogaea HOM05D005137 ORTHO05D006478 7.2e-63 244.2 164 68.3
Carub.0001s3248 Capsella rubella HOM05D005137 ORTHO05D006478 7.2e-63 244.2 164 70.1
Cfa018205 Carpinus fangiana HOM05D005137 ORTHO05D006478 7.2e-63 244.2 164 72.0
CANSAT64G0780 Cannabis sativa HOM05D005137 ORTHO05D006478 1.2e-62 243.4 164 70.1
Duzib177G1119 Durio zibethinus HOM05D005137 ORTHO05D006478 1.2e-62 243.4 164 69.5
Gorai.009G263900 Gossypium raimondii HOM05D005137 ORTHO05D006478 1.2e-62 243.4 164 70.7
SalBow6G2431 Salvia bowleyana HOM05D005137 ORTHO05D006478 1.6e-62 243.0 164 72.6
SalBow6G5561 Salvia bowleyana HOM05D005137 ORTHO05D006478 1.6e-62 243.0 164 72.6
SGA_v2.0_scaffold149G36609 Striga asiatica HOM05D005137 ORTHO05D006478 1.6e-62 243.0 164 70.7
Dinv41687 Davidia involucrata HOM05D005137 ORTHO05D006478 2.1e-62 242.7 164 70.7
VMungo0464G1968 Vigna mungo HOM05D005137 ORTHO05D006478 2.1e-62 242.7 164 71.3
THA.LOC104813096 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 2.7e-62 242.3 164 66.5
Glyma.02G074600 Glycine max HOM05D005137 ORTHO05D006478 3.5e-62 241.9 164 68.3
Glyma.09G166500 Glycine max HOM05D005137 ORTHO05D006478 3.5e-62 241.9 164 69.5
Manes.02G220500 Manihot esculenta HOM05D005137 ORTHO05D006478 3.5e-62 241.9 164 69.5
Thhalv10008956m.g Eutrema salsugineum HOM05D005137 ORTHO05D006478 4.6e-62 241.5 164 67.7
Sp1g29570 Schrenkiella parvula HOM05D005137 ORTHO05D006478 4.6e-62 241.5 164 68.3
Nn5g27795 Nelumbo nucifera HOM05D005137 ORTHO05D006478 6.1e-62 241.1 164 69.5
Peaxi162Scf00020g02234 Petunia axillaris HOM05D005137 ORTHO05D006478 6.1e-62 241.1 164 70.1
Potri.019G085500 Populus trichocarpa HOM05D005137 ORTHO05D006478 1.0e-61 240.4 166 68.7
AL1G48900 Arabidopsis lyrata HOM05D005137 ORTHO05D006478 1.3e-61 240.0 164 68.3
CiPaw.15G082700 Carya illinoinensis HOM05D005137 ORTHO05D006478 1.3e-61 240.0 164 70.7
MSTRG.22441 Avicennia marina HOM05D005137 ORTHO05D006478 1.8e-61 239.6 164 68.3
C06p11610 Brassica napus HOM05D005137 ORTHO05D006478 1.8e-61 239.6 164 67.7
A08p08280 Brassica napus HOM05D005137 ORTHO05D006478 2.3e-61 239.2 164 67.7
ECA248G1561 Erigeron canadensis HOM05D005137 ORTHO05D006478 2.3e-61 239.2 164 67.7
Lsat_1_v5_gn_1_53501 Lactuca sativa HOM05D005137 ORTHO05D006478 2.3e-61 239.2 164 68.9
Eucgr.F04136 Eucalyptus grandis HOM05D005137 ORTHO05D006478 3.0e-61 238.8 164 68.3
BcaB03g13677 Brassica carinata HOM05D005137 ORTHO05D006478 5.1e-61 238.0 164 66.5
Ciclev10002730m.g Citrus clementina HOM05D005137 ORTHO05D006478 5.1e-61 238.0 164 69.5
Prupe.8G054100 Prunus persica HOM05D005137 ORTHO05D006478 6.7e-61 237.7 164 67.7
HanXRQChr01g0027021 Helianthus annuus HOM05D005137 ORTHO05D006478 8.7e-61 237.3 164 67.1
Lalb_Chr01g0009971 Lupinus albus HOM05D005137 ORTHO05D006478 8.7e-61 237.3 164 67.1
AT1G34350 Arabidopsis thaliana HOM05D005137 ORTHO05D006478 1.1e-60 236.9 164 67.1
Potri.013G114800 Populus trichocarpa HOM05D005137 ORTHO05D006478 1.1e-60 236.9 166 68.1
PGR004G0411 Punica granatum HOM05D005137 ORTHO05D006478 1.1e-60 236.9 164 68.3
Thecc.08G201900 Theobroma cacao HOM05D005137 ORTHO05D006478 1.1e-60 236.9 164 67.7
Haze_17904 Corylus avellana HOM05D005137 ORTHO05D006478 1.5e-60 236.5 188 63.8
Duzib116G0364 Durio zibethinus HOM05D005137 ORTHO05D006478 1.5e-60 236.5 164 67.1
Hund27077 Selenicereus undatus HOM05D005137 ORTHO05D006478 1.9e-60 236.1 162 67.3
TWI34G1514 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 2.5e-60 235.7 164 66.5
BcaB07g33131 Brassica carinata HOM05D005137 ORTHO05D006478 3.3e-60 235.3 164 65.2
BcaC08g43783 Brassica carinata HOM05D005137 ORTHO05D006478 3.3e-60 235.3 164 65.9
BolC6t36295H Brassica oleracea HOM05D005137 ORTHO05D006478 3.3e-60 235.3 164 65.9
MELO3C024753.2 Cucumis melo HOM05D005137 ORTHO05D006478 3.3e-60 235.3 164 67.1
CsaV3_2G035870 Cucumis sativus L. HOM05D005137 ORTHO05D006478 3.3e-60 235.3 164 67.1
Sabra13G0097100 Salix brachista HOM05D005137 ORTHO05D006478 3.3e-60 235.3 166 66.3
PGSC0003DMG400033629 Solanum tuberosum HOM05D005137 ORTHO05D006478 4.3e-60 235.0 164 70.1
BcaC05g27759 Brassica carinata HOM05D005137 ORTHO05D006478 5.7e-60 234.6 164 64.6
C05p37550 Brassica napus HOM05D005137 ORTHO05D006478 5.7e-60 234.6 164 64.6
Atru.chr13.1812 Acer truncatum HOM05D005137 ORTHO05D006478 7.4e-60 234.2 164 67.1
Cpa.g.sc66.58 Carica papaya HOM05D005137 ORTHO05D006478 7.4e-60 234.2 164 67.7
DCAR_006419 Daucus carota HOM05D005137 ORTHO05D006478 7.4e-60 234.2 164 67.1
Sopen08g021770 Solanum pennellii HOM05D005137 ORTHO05D006478 9.7e-60 233.8 164 69.5
Solyc08g067830.3 Solanum lycopersicum HOM05D005137 ORTHO05D006478 2.2e-59 232.6 164 69.5
unitig_52.g17664 Utricularia gibba HOM05D005137 ORTHO05D006478 2.8e-59 232.3 164 67.1
RcHm_v2.0_Chr6g0272201 Rosa chinensis HOM05D005137 ORTHO05D006478 4.8e-59 231.5 164 65.9
Sed0020054 Sechium edule HOM05D005137 ORTHO05D006478 4.8e-59 231.5 164 65.9
TWI32G0414 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 4.8e-59 231.5 164 65.2
Aa31LG6G8420 Aethionema arabicum HOM05D005137 ORTHO05D006478 8.2e-59 230.7 173 64.2
CDE05G2425 Ceratophyllum demersum HOM05D005137 ORTHO05D006478 8.2e-59 230.7 164 67.1
MD10G1046500 Malus domestica HOM05D005137 ORTHO05D006478 1.1e-58 230.3 164 65.2
AUR62023580 Chenopodium quinoa HOM05D005137 ORTHO05D006478 1.8e-58 229.6 156 67.3
CAN.G623.4 Capsicum annuum HOM05D005137 ORTHO05D006478 3.1e-58 228.8 164 68.3
Sc01g0001710 Simmondsia chinensis HOM05D005137 ORTHO05D006478 3.1e-58 228.8 164 64.6
Hund16805 Selenicereus undatus HOM05D005137 ORTHO05D006478 4.1e-58 228.4 164 65.9
Cc10_g11140 Coffea canephora HOM05D005137 ORTHO05D006478 6.9e-58 227.6 164 66.5
Medtr1g083990 Medicago truncatula HOM05D001444 ORTHO05D006478 1.5e-57 226.5 174 63.8
Zm00001eb174480 Zea mays HOM05D005137 ORTHO05D006478 2.6e-57 225.7 168 61.3
BolC8t47866H Brassica oleracea HOM05D005137 ORTHO05D006478 3.4e-57 225.3 185 59.5
MD05G1040400 Malus domestica HOM05D005137 ORTHO05D006478 3.4e-57 225.3 164 64.0
BraA08t32846Z Brassica rapa HOM05D005137 ORTHO05D006478 2.2e-56 222.6 193 57.0
ClCG02G007860 Citrullus lanatus HOM05D005137 ORTHO05D006478 2.2e-56 222.6 161 66.5
EL10Ac1g00786 Beta vulgaris HOM05D005137 ORTHO05D006478 1.9e-55 219.5 164 59.8
FAN20G1842 Fragaria x ananassa HOM05D005137 ORTHO05D006478 1.9e-55 219.5 164 63.4
BolC5t32496H Brassica oleracea HOM05D005137 ORTHO05D006478 2.5e-55 219.2 191 55.0
FvH4_2g12231 Fragaria vesca HOM05D005137 ORTHO05D006478 7.2e-55 217.6 164 62.2
FAN27G0578 Fragaria x ananassa HOM05D005137 ORTHO05D006478 1.6e-54 216.5 164 62.8
HPP92_025038 Vanilla planifolia HOM05D005137 ORTHO05D006478 3.6e-54 215.3 164 61.6
ATR0584G018 Amborella trichopoda HOM05D005137 ORTHO05D006478 4.6e-54 214.9 164 65.9
Nitab4.5_0000125g0160 Nicotiana tabacum HOM05D005137 ORTHO05D006478 7.9e-54 214.2 164 64.6
Os08g0104100 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 1.0e-53 213.8 162 58.6
CARHR033800 Cardamine hirsuta HOM05D005137 ORTHO05D006478 2.6e-49 199.1 133 68.4
SEGI_32859 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 6.1e-46 188.0 174 56.3
SEGI_32911 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 7.9e-46 187.6 170 57.6
Os05g0432500 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 1.5e-44 183.3 164 52.4
COL.COLO4_35446 Corchorus olitorius HOM05D005137 ORTHO05D006478 1.2e-41 173.7 221 46.2
AUR62004663 Chenopodium quinoa HOM05D005137 ORTHO05D006478 2.0e-41 172.9 169 50.9
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 1.7e-40 169.9 132 59.8
unitig_62.g23355 Utricularia gibba HOM05D005137 ORTHO05D006478 5.0e-40 168.3 167 50.9
Nitab4.5_0006579g0080 Nicotiana tabacum HOM05D005137 ORTHO05D006478 5.5e-39 164.9 164 53.0
Pp3c12_6500 Physcomitrium patens HOM05D005137 ORTHO05D006478 3.6e-38 162.2 168 47.6
Glyma.16G216600 Glycine max HOM05D005137 ORTHO05D006478 8.0e-38 161.0 117 66.7
AagrBONN_evm.TU.Sc2ySwM_117.1441 Anthoceros agrestis HOM05D005137 ORTHO05D006478 2.0e-36 156.4 127 55.9
Mapoly0118s0004 Marchantia polymorpha HOM05D005137 ORTHO05D006478 3.7e-35 152.1 127 58.3
SMO115G0137 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 2.0e-33 146.4 122 51.6
Actinidia32879 Actinidia chinensis HOM05D005137 ORTHO05D006478 2.7e-33 146.0 94 73.4
CAN.G21.12 Capsicum annuum HOM05D005137 ORTHO05D006478 2.2e-32 142.9 95 74.7
SMO304G0014 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 1.9e-31 139.8 125 55.2
Rhsim06G0097400 Rhododendron simsii HOM05D005137 ORTHO05D006478 1.4e-29 133.7 82 73.2
Lj7P297T42 Lonicera japonica HOM05D005137 ORTHO05D006478 1.8e-29 133.3 83 73.5
BraA09t38756Z Brassica rapa HOM05D005137 ORTHO05D006478 3.0e-29 132.5 96 62.5
QL02p034107 Quercus lobata HOM05D005137 ORTHO05D006478 8.8e-29 131.0 82 74.4
QL02p034100 Quercus lobata HOM05D005137 ORTHO05D006478 2.6e-28 129.4 82 70.7
Cre02.g142150 Chlamydomonas reinhardtii HOM05D005137 ORTHO05D006478 7.5e-28 127.9 126 49.2
Peaxi162Scf00105g01425 Petunia axillaris HOM05D005137 ORTHO05D006478 7.5e-28 127.9 91 69.2
arahy.Tifrunner.gnm1.ann1.T3MISZ Arachis hypogaea HOM05D005137 ORTHO05D006478 1.8e-21 106.7 66 68.2
SGA_v2.0_scaffold386G50489 Striga asiatica HOM05D005137 ORTHO05D006478 5.2e-21 105.1 104 54.8
Dinv30978 Davidia involucrata HOM05D005137 ORTHO05D006478 2.0e-17 93.2 69 66.7
BcaB04g17880 Brassica carinata HOM05D005137 ORTHO05D006478 2.3e-16 89.7 57 64.9
MCO05G717 Micromonas commoda HOM05D005137 ORTHO05D006478 2.3e-16 89.7 119 35.3
Zm00001eb289230 Zea mays HOM05D005137 ORTHO05D006478 1.2e-14 84.0 96 45.8
arahy.Tifrunner.gnm1.ann1.T6GVNL Arachis hypogaea HOM05D005137 ORTHO05D006478 6.1e-14 81.6 68 58.8
arahy.Tifrunner.gnm1.ann1.84LCSI Arachis hypogaea HOM05D005137 ORTHO05D013367 5.7e-12 75.1 46 67.4
Lj7C297T10 Lonicera japonica HOM05D005137 ORTHO05D006478 2.9e-11 72.8 47 68.1
SGA_v2.0_scaffold1053G53813 Striga asiatica HOM05D005137 ORTHO05D006478 3.2e-10 69.3 81 49.4
TPR.G27590 Trifolium pratense HOM05D005137 ORTHO05D006478 5.4e-10 68.6 47 63.8
vmacro12499 Vaccinium macrocarpon HOM05D005137 ORTHO05D006478 5.4e-10 68.6 46 65.2
arahy.Tifrunner.gnm1.ann1.A3G9LL Arachis hypogaea HOM05D005137 ORTHO05D006478 3.5e-09 65.9 48 62.5
Medtr2g069440 Medicago truncatula HOM05D003000 ORTHO05D003699 7.8e-09 64.7 51 60.8


User provided reference genes

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