Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 2.7e-146 521.9 258 100.0
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 1.1e-102 377.1 261 69.3
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 2.0e-96 356.3 257 65.8
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 2.6e-96 355.9 261 67.8
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 7.5e-96 354.4 257 65.4
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 2.2e-95 352.8 259 66.0
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 6.4e-95 351.3 257 65.4
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 2.4e-94 349.4 257 65.0
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 5.4e-94 348.2 260 65.0
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 1.6e-93 346.7 257 64.2
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 3.5e-93 345.5 258 64.0
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 3.5e-93 345.5 259 64.1
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 3.9e-92 342.0 259 62.2
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 9.5e-91 337.4 257 63.0
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 1.1e-89 334.0 256 62.9
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 1.1e-89 334.0 259 62.5
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 3.1e-89 332.4 254 63.4
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 4.0e-89 332.0 256 59.8
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 8.9e-89 330.9 258 62.0
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 1.2e-88 330.5 256 62.9
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 1.5e-88 330.1 257 61.1
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 1.5e-88 330.1 255 62.0
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 2.6e-88 329.3 259 61.8
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 1.3e-87 327.0 260 61.9
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 1.3e-87 327.0 260 62.7
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 1.7e-87 326.6 257 62.6
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 1.7e-87 326.6 253 60.5
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 2.2e-87 326.2 254 62.6
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 4.9e-87 325.1 257 60.3
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 8.4e-87 324.3 256 59.4
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 8.4e-87 324.3 257 60.3
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 1.1e-86 323.9 279 57.0
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 1.4e-86 323.6 256 59.4
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 1.4e-86 323.6 174 93.1
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 3.2e-86 322.4 259 59.8
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 4.1e-86 322.0 259 59.5
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 5.4e-86 321.6 258 60.1
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 7.1e-86 321.2 256 59.0
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.2e-85 320.5 224 66.5
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 1.2e-85 320.5 256 59.4
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 1.6e-85 320.1 257 59.9
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 2.7e-85 319.3 257 58.0
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 4.6e-85 318.5 258 60.1
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 3.9e-84 315.5 257 59.1
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 5.1e-84 315.1 217 64.1
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 6.6e-84 314.7 258 59.3
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 6.6e-84 314.7 259 59.1
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 8.6e-84 314.3 257 58.8
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 8.6e-84 314.3 297 55.2
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 8.6e-84 314.3 221 67.0
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 1.5e-83 313.5 261 57.5
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 1.5e-83 313.5 262 60.3
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 3.3e-83 312.4 259 57.1
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 4.3e-83 312.0 224 64.3
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 7.3e-83 311.2 262 57.3
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 3.6e-82 308.9 259 57.1
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 3.6e-82 308.9 261 57.9
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 1.1e-81 307.4 258 56.6
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 4.0e-81 305.4 263 57.0
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 3.4e-80 302.4 281 52.7
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 4.4e-80 302.0 258 55.8
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 5.8e-80 301.6 207 65.2
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 5.8e-80 301.6 207 65.2
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 7.6e-80 301.2 260 56.5
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 7.6e-80 301.2 290 55.5
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 9.9e-80 300.8 262 55.7
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 9.9e-80 300.8 259 57.9
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 1.3e-79 300.4 258 55.8
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 2.9e-79 299.3 258 56.6
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 2.9e-79 299.3 260 56.9
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 3.8e-79 298.9 238 60.5
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 4.9e-79 298.5 260 56.2
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 4.9e-79 298.5 260 56.2
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 6.4e-79 298.1 271 54.6
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 4.2e-78 295.4 255 56.9
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 7.1e-78 294.7 263 57.4
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.2e-77 293.9 241 59.3
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 1.6e-77 293.5 260 55.4
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 3.5e-77 292.4 257 54.5
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 1.0e-76 290.8 218 61.0
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.0e-76 290.8 254 56.3
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 3.0e-76 289.3 251 56.2
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 5.1e-76 288.5 258 55.0
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 1.9e-75 286.6 300 49.3
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 2.5e-75 286.2 235 58.3
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 3.3e-75 285.8 237 57.0
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 3.3e-75 285.8 258 55.8
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 4.8e-74 282.0 200 63.0
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 4.8e-74 282.0 325 47.7
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 6.2e-74 281.6 250 56.0
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 6.2e-74 281.6 233 56.2
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.1e-73 280.8 237 55.7
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 6.9e-73 278.1 227 60.4
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 9.0e-73 277.7 278 51.4
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 5.8e-72 275.0 256 53.5
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 5.8e-72 275.0 222 57.7
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 3.8e-71 272.3 213 59.6
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 1.2e-69 267.3 225 57.8
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 3.9e-68 262.3 270 49.6
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 3.6e-66 255.8 308 46.4
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 4.0e-65 252.3 228 54.4
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.6e-64 249.6 236 54.2
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 1.3e-63 247.3 181 63.5
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 5.5e-62 241.9 236 51.7
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 9.3e-62 241.1 183 62.3
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 1.7e-55 220.3 258 44.6
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 6.5e-55 218.4 271 42.1
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 8.4e-55 218.0 185 56.8
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 1.9e-54 216.9 213 46.5
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 5.5e-54 215.3 226 48.7
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 3.5e-53 212.6 182 56.0
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 3.0e-52 209.5 187 54.5
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 1.4e-49 200.7 217 47.5
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 4.1e-49 199.1 186 54.3
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 4.5e-48 195.7 215 46.0
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 7.6e-48 194.9 196 51.5
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 8.4e-47 191.4 223 44.4
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 1.9e-46 190.3 169 52.7
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 3.5e-45 186.0 163 54.0
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 7.9e-45 184.9 141 58.2
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 4.3e-43 179.1 149 61.1
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 6.3e-42 175.3 166 57.2
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 1.1e-41 174.5 141 57.4
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.0e-39 167.9 151 56.3
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 1.6e-37 160.6 130 56.9
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 8.8e-36 154.8 200 43.5
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 5.7e-35 152.1 126 60.3
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 2.2e-34 150.2 126 57.1
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 3.7e-34 149.4 217 37.8
MD06G1059000 Malus domestica HOM05D004561 ORTHO05D005315 3.1e-33 146.4 112 58.0
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 1.3e-31 141.0 370 28.1
Sopen05g006540 Solanum pennellii HOM05D004561 ORTHO05D005315 1.1e-30 137.9 149 51.0
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 2.5e-30 136.7 113 58.4
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 3.2e-30 136.3 256 33.2
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 1.2e-29 134.4 239 33.9
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.1e-27 127.9 88 69.3
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 7.4e-27 125.2 88 68.2
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 9.7e-27 124.8 88 68.2
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.8e-26 123.2 88 65.9
MBI08_g32523_MAGBIO Magnolia biondii HOM05D004561 ORTHO05D005315 1.1e-25 121.3 78 67.9
SalBow1G7315 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.0e-24 117.1 240 34.6
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.1e-22 111.3 114 46.5
arahy.Tifrunner.gnm1.ann1.Y05SLV Arachis hypogaea HOM05D004561 ORTHO05D005315 1.5e-22 110.9 94 54.3
Solyc05g010730.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 1.1e-19 101.3 68 67.6
SEGI_12631 Sequoiadendron giganteum HOM05D004561 ORTHO05D005315 1.7e-18 97.4 77 55.8
Nitab4.5_0013603g0010 Nicotiana tabacum HOM05D004561 ORTHO05D005315 4.8e-18 95.9 69 59.4
SalBow1G6765 Salvia bowleyana HOM05D004561 ORTHO05D005315 7.0e-17 92.0 81 58.0
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.6e-16 90.9 67 55.2
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.5e-16 89.7 67 55.2
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 4.5e-16 89.4 63 60.3
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.0e-15 88.2 67 53.7
SHI05852 Sapria himalayana HOM05D000002 ORTHO05D000001 2.2e-15 87.0 86 53.5
SHI05337 Sapria himalayana HOM05D004561 ORTHO05D005315 1.8e-12 77.4 102 42.2
SalBow1G4445 Salvia bowleyana HOM05D025598 ORTHO05D005315 6.8e-12 75.5 58 60.3
RcHm_v2.0_Chr7g0204241 Rosa chinensis HOM05D004561 ORTHO05D005315 1.2e-11 74.7 82 51.2
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 6.3e-10 68.9 65 49.2
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 8.3e-10 68.6 59 52.5
RcHm_v2.0_Chr7g0204201 Rosa chinensis HOM05D004561 ORTHO05D005315 1.2e-08 64.7 82 46.3
TAR371G0964 Trochodendron aralioides HOM05D000762 ORTHO05D002234 8.5e-07 58.5 31 83.9
SHI05350 Sapria himalayana HOM05D004561 ORTHO05D005315 3.2e-06 56.6 135 27.4


User provided reference genes

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