Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G6462 Papaver somniferum HOM05D001880 ORTHO05D005098 2.3e-114 415.6 216 100.0
PSO210G1422 Papaver somniferum HOM05D001880 ORTHO05D005098 5.1e-114 414.5 216 99.5
Aqoxy7G01618 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 1.6e-107 392.9 216 91.7
ATR0315G044 Amborella trichopoda HOM05D001880 ORTHO05D005098 3.6e-107 391.7 216 92.1
Nn3g18068 Nelumbo nucifera HOM05D001880 ORTHO05D005098 7.9e-107 390.6 216 91.7
CANSAT25G1770 Cannabis sativa HOM05D001880 ORTHO05D005098 8.8e-106 387.1 216 91.2
DCAR_000746 Daucus carota HOM05D001880 ORTHO05D005098 1.1e-105 386.7 216 90.7
Sed0015028 Sechium edule HOM05D001880 ORTHO05D005098 1.5e-105 386.3 216 90.7
Aqoxy7G03843 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 2.0e-105 386.0 216 89.4
Potri.006G241900 Populus trichocarpa HOM05D001880 ORTHO05D005098 2.6e-105 385.6 216 90.7
Ciclev10009455m.g Citrus clementina HOM05D001880 ORTHO05D005098 3.3e-105 385.2 216 90.3
CsaV3_3G047450 Cucumis sativus L. HOM05D001880 ORTHO05D005098 3.3e-105 385.2 216 91.2
Potri.018G037800 Populus trichocarpa HOM05D001880 ORTHO05D005098 3.3e-105 385.2 216 90.7
Gohir.D08G272200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 4.4e-105 384.8 216 91.2
Gorai.004G290600 Gossypium raimondii HOM05D001880 ORTHO05D005098 4.4e-105 384.8 216 91.2
TAR383G0375 Trochodendron aralioides HOM05D001880 ORTHO05D005098 4.4e-105 384.8 216 89.8
CSS0008123 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 5.7e-105 384.4 216 91.2
CSS0050171 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 5.7e-105 384.4 216 91.2
Sed0004320 Sechium edule HOM05D001880 ORTHO05D005098 5.7e-105 384.4 216 90.3
TAR626G0694 Trochodendron aralioides HOM05D001880 ORTHO05D005098 5.7e-105 384.4 216 89.4
Manes.16G065900 Manihot esculenta HOM05D001880 ORTHO05D005098 9.7e-105 383.6 216 89.8
ClCG11G014050 Citrullus lanatus HOM05D001880 ORTHO05D005098 1.7e-104 382.9 216 90.7
MELO3C003579.2 Cucumis melo HOM05D001880 ORTHO05D005098 2.2e-104 382.5 216 90.3
Eucgr.C01583 Eucalyptus grandis HOM05D001880 ORTHO05D005098 2.2e-104 382.5 216 90.3
vmacro07643 Vaccinium macrocarpon HOM05D001880 ORTHO05D005098 2.2e-104 382.5 216 89.8
Manes.03G063100 Manihot esculenta HOM05D001880 ORTHO05D005098 2.8e-104 382.1 216 90.3
Nn2g11707 Nelumbo nucifera HOM05D001880 ORTHO05D005098 2.8e-104 382.1 216 89.4
arahy.Tifrunner.gnm1.ann1.0TS4QU Arachis hypogaea HOM05D001880 ORTHO05D005098 8.2e-104 380.6 216 88.9
arahy.Tifrunner.gnm1.ann1.I4CW6I Arachis hypogaea HOM05D001880 ORTHO05D005098 8.2e-104 380.6 216 88.9
DCAR_004495 Daucus carota HOM05D001880 ORTHO05D005098 8.2e-104 380.6 216 89.8
Duzib150G0439 Durio zibethinus HOM05D001880 ORTHO05D005098 1.1e-103 380.2 216 88.9
Glyma.04G080400 Glycine max HOM05D001880 ORTHO05D005098 1.1e-103 380.2 216 89.8
Gohir.A08G250700 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.1e-103 380.2 216 90.3
Hma1.2p1_0140F.1_g063500 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 1.1e-103 380.2 216 89.4
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 1.1e-103 380.2 215 90.2
Atru.chr7.2156 Acer truncatum HOM05D001880 ORTHO05D005098 1.4e-103 379.8 216 89.4
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 1.4e-103 379.8 215 90.2
THA.LOC104815053 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 1.4e-103 379.8 216 89.4
Lalb_Chr11g0064351 Lupinus albus HOM05D001880 ORTHO05D005098 3.1e-103 378.6 216 88.9
TWI63G1366 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 3.1e-103 378.6 216 91.2
HPP92_023949 Vanilla planifolia HOM05D001880 ORTHO05D005098 5.3e-103 377.9 216 86.1
Phvul.009G106500 Phaseolus vulgaris HOM05D001880 ORTHO05D005098 7.0e-103 377.5 216 88.9
Thecc.09G040200 Theobroma cacao HOM05D001880 ORTHO05D005098 7.0e-103 377.5 216 88.4
CiPaw.08G023800 Carya illinoinensis HOM05D001880 ORTHO05D005098 9.1e-103 377.1 216 88.4
MD08G1117900 Malus domestica HOM05D001880 ORTHO05D005098 9.1e-103 377.1 216 91.2
Lj1g0025868 Lotus japonicus HOM05D001880 ORTHO05D005098 2.0e-102 375.9 220 88.6
Zm00001eb350500 Zea mays HOM05D001880 ORTHO05D005098 2.0e-102 375.9 216 86.1
HanXRQChr07g0188141 Helianthus annuus HOM05D001880 ORTHO05D005098 2.6e-102 375.6 216 88.4
Thhalv10014652m.g Eutrema salsugineum HOM05D001880 ORTHO05D005098 3.5e-102 375.2 216 86.6
CDE05G1188 Ceratophyllum demersum HOM05D001880 ORTHO05D005098 4.5e-102 374.8 216 88.0
Carub.0006s0996 Capsella rubella HOM05D001880 ORTHO05D005098 7.7e-102 374.0 216 86.1
CARHR201720 Cardamine hirsuta HOM05D001880 ORTHO05D005098 7.7e-102 374.0 216 86.1
Duzib187G1109 Durio zibethinus HOM05D001880 ORTHO05D005098 7.7e-102 374.0 216 88.4
Sp6g32100 Schrenkiella parvula HOM05D001880 ORTHO05D005098 7.7e-102 374.0 216 86.6
THA.LOC104799203 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 7.7e-102 374.0 216 88.0
COL.COLO4_18693 Corchorus olitorius HOM05D001880 ORTHO05D005098 1.0e-101 373.6 216 88.0
MD15G1097400 Malus domestica HOM05D001880 ORTHO05D005098 1.3e-101 373.2 216 90.3
AL6G22170 Arabidopsis lyrata HOM05D001880 ORTHO05D005098 1.7e-101 372.9 216 85.6
AT5G11500 Arabidopsis thaliana HOM05D001880 ORTHO05D005098 1.7e-101 372.9 216 85.6
BcaB01g05480 Brassica carinata HOM05D001880 ORTHO05D005098 1.7e-101 372.9 216 86.1
A03p05050 Brassica napus HOM05D001880 ORTHO05D005098 1.7e-101 372.9 216 86.1
BraA03t09839Z Brassica rapa HOM05D001880 ORTHO05D005098 1.7e-101 372.9 216 86.1
Migut.A00247 Erythranthe guttata HOM05D001880 ORTHO05D005098 1.7e-101 372.9 216 86.6
Glyma.06G082100 Glycine max HOM05D001880 ORTHO05D005098 1.7e-101 372.9 216 88.0
Lalb_Chr08g0243251 Lupinus albus HOM05D001880 ORTHO05D005098 1.7e-101 372.9 216 88.4
BcaB08g37053 Brassica carinata HOM05D001880 ORTHO05D005098 2.2e-101 372.5 216 85.6
C03p05780 Brassica napus HOM05D001880 ORTHO05D005098 2.2e-101 372.5 216 85.6
BolC3t13091H Brassica oleracea HOM05D001880 ORTHO05D005098 2.2e-101 372.5 216 85.6
CiPaw.07G206800 Carya illinoinensis HOM05D001880 ORTHO05D005098 2.2e-101 372.5 215 87.9
Peaxi162Scf00523g00111 Petunia axillaris HOM05D001880 ORTHO05D005098 2.2e-101 372.5 216 88.0
Cc08_g09010 Coffea canephora HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 86.1
Gohir.A07G023800 Gossypium hirsutum HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 87.5
Psat0s4721g0040 Pisum sativum HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 88.0
Gohir.D05G049500 Gossypium hirsutum HOM05D001880 ORTHO05D005098 5.0e-101 371.3 216 87.5
BcaC03g13368 Brassica carinata HOM05D001880 ORTHO05D005098 8.5e-101 370.5 216 85.6
MSTRG.25891 Avicennia marina HOM05D001880 ORTHO05D005098 1.1e-100 370.2 216 87.0
BcaC04g19219 Brassica carinata HOM05D001880 ORTHO05D005098 1.1e-100 370.2 216 84.7
A10p26250 Brassica napus HOM05D001880 ORTHO05D005098 1.1e-100 370.2 216 84.7
C09p65340 Brassica napus HOM05D001880 ORTHO05D005098 1.1e-100 370.2 216 84.7
BolC9t59360H Brassica oleracea HOM05D001880 ORTHO05D005098 1.1e-100 370.2 216 84.7
BraA10t44682Z Brassica rapa HOM05D001880 ORTHO05D005098 1.1e-100 370.2 216 84.7
Gohir.D07G027400 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.1e-100 370.2 216 87.0
Prupe.1G452200 Prunus persica HOM05D001880 ORTHO05D005098 1.1e-100 370.2 227 86.8
CAN.G21.29 Capsicum annuum HOM05D001880 ORTHO05D005098 1.5e-100 369.8 216 85.6
Gorai.009G050800 Gossypium raimondii HOM05D001880 ORTHO05D005098 2.5e-100 369.0 216 87.0
Hma1.2p1_0422F.1_g150140 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 3.2e-100 368.6 216 86.6
Gorai.001G028600 Gossypium raimondii HOM05D001880 ORTHO05D005098 4.2e-100 368.2 215 86.5
Nitab4.5_0007240g0010 Nicotiana tabacum HOM05D001880 ORTHO05D005098 4.2e-100 368.2 216 86.1
Solyc08g068300.3 Solanum lycopersicum HOM05D001880 ORTHO05D005098 4.2e-100 368.2 216 85.6
Sopen08g022150 Solanum pennellii HOM05D001880 ORTHO05D005098 4.2e-100 368.2 216 85.6
TWI32G1114 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 4.2e-100 368.2 216 88.4
PGSC0003DMG400010834 Solanum tuberosum HOM05D001880 ORTHO05D005098 5.5e-100 367.9 216 85.2
C02p05070 Brassica napus HOM05D001880 ORTHO05D005098 7.2e-100 367.5 216 84.7
Dinv14228 Davidia involucrata HOM05D001880 ORTHO05D005098 7.2e-100 367.5 216 87.0
Gohir.A05G048200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 9.4e-100 367.1 216 86.1
MSTRG.1651 Avicennia marina HOM05D001880 ORTHO05D005098 1.6e-99 366.3 216 84.7
Cpa.g.sc78.78 Carica papaya HOM05D001880 ORTHO05D005098 1.6e-99 366.3 216 86.6
Nitab4.5_0000052g0180 Nicotiana tabacum HOM05D001880 ORTHO05D005098 2.1e-99 365.9 214 86.0
GSVIVG01035667001 Vitis vinifera HOM05D001880 ORTHO05D005098 2.7e-99 365.5 199 95.0
Medtr3g110022 Medicago truncatula HOM05D001880 ORTHO05D005098 1.4e-98 363.2 216 85.6
unitig_748.g7799 Utricularia gibba HOM05D001880 ORTHO05D005098 3.0e-98 362.1 216 82.4
PGR044G1166 Punica granatum HOM05D001880 ORTHO05D005098 4.0e-98 361.7 216 86.1
Lalb_Chr23g0269461 Lupinus albus HOM05D001880 ORTHO05D005098 1.5e-97 359.8 216 84.7
Mapoly0042s0036 Marchantia polymorpha HOM05D001880 ORTHO05D005098 2.6e-97 359.0 216 82.4
SGA_v2.0_scaffold163G38091 Striga asiatica HOM05D001880 ORTHO05D005098 3.3e-97 358.6 221 82.4
SalBow8G4639 Salvia bowleyana HOM05D001880 ORTHO05D005098 2.8e-96 355.5 217 83.9
SMO134G0016 Selaginella moellendorffii HOM05D001880 ORTHO05D005098 3.7e-96 355.1 216 80.6
BcaNung01928 Brassica carinata HOM05D001880 ORTHO05D005098 6.3e-96 354.4 221 82.4
TPR.G1376 Trifolium pratense HOM05D001880 ORTHO05D005098 2.4e-95 352.4 216 83.8
Rhsim03G0046500 Rhododendron simsii HOM05D001880 ORTHO05D005098 1.9e-92 342.8 216 82.9
SalBow4G0117 Salvia bowleyana HOM05D001880 ORTHO05D005098 2.7e-91 339.0 216 81.9
Hund19544 Selenicereus undatus HOM05D001880 ORTHO05D005098 4.7e-91 338.2 221 79.6
Aa31LG3G15700 Aethionema arabicum HOM05D001758 ORTHO05D005969 6.1e-91 337.8 216 81.5
Pp3c9_4250 Physcomitrium patens HOM05D001880 ORTHO05D005098 1.4e-90 336.7 216 77.8
FvH4_2g36060 Fragaria vesca HOM05D001880 ORTHO05D005098 5.2e-90 334.7 216 80.6
RcHm_v2.0_Chr6g0305791 Rosa chinensis HOM05D001880 ORTHO05D005098 5.2e-90 334.7 216 80.6
BolC2t06461H Brassica oleracea HOM05D001880 ORTHO05D005098 8.8e-90 334.0 218 78.4
Os01g0750500 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 2.0e-89 332.8 216 75.0
Lj8C597T7 Lonicera japonica HOM05D001880 ORTHO05D005098 5.7e-89 331.3 216 81.0
Pp3c9_9290 Physcomitrium patens HOM05D001880 ORTHO05D005098 9.8e-89 330.5 216 76.9
CBR_g39177 Chara braunii HOM05D001880 ORTHO05D005098 6.3e-88 327.8 216 77.3
CBR_g40963 Chara braunii HOM05D001880 ORTHO05D005098 2.7e-86 322.4 216 75.9
SGA_v2.0_scaffold169G38642 Striga asiatica HOM05D001880 ORTHO05D005098 2.9e-85 318.9 216 76.4
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 1.5e-84 316.6 214 76.6
Oeu014654.1 Olea europaea HOM05D001880 ORTHO05D005098 4.2e-84 315.1 216 76.4
Lsat_1_v5_gn_5_34021 Lactuca sativa HOM05D001880 ORTHO05D005098 9.4e-84 313.9 215 76.7
AUR62009327 Chenopodium quinoa HOM05D001880 ORTHO05D005098 2.0e-81 306.2 216 75.5
QL12p026578 Quercus lobata HOM05D001880 ORTHO05D005098 2.6e-81 305.8 165 90.9
Dinv30256 Davidia involucrata HOM05D001880 ORTHO05D005098 5.7e-81 304.7 165 92.1
Sc09g0009110 Simmondsia chinensis HOM05D001880 ORTHO05D005098 7.5e-81 304.3 276 62.7
Ca_15617_v3 Cicer arietinum L. HOM05D001880 ORTHO05D005098 1.8e-79 299.7 165 90.3
FAN27G1491 Fragaria x ananassa HOM05D001880 ORTHO05D005098 4.5e-78 295.0 216 73.6
Zm00001eb153360 Zea mays HOM05D001880 ORTHO05D005098 5.9e-78 294.7 217 70.5
EL10Ac2g04067 Beta vulgaris HOM05D001880 ORTHO05D005098 1.7e-77 293.1 216 73.1
FAN15G2674 Fragaria x ananassa HOM05D001880 ORTHO05D005098 1.7e-77 293.1 216 73.1
Oeu016233.2 Olea europaea HOM05D001880 ORTHO05D005098 4.3e-76 288.5 216 69.9
Gorai.011G152300 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.0e-74 283.9 216 69.4
PSO832G1756 Papaver somniferum HOM05D001880 ORTHO05D005098 1.4e-74 283.5 217 68.2
AUR62023014 Chenopodium quinoa HOM05D000682 ORTHO05D000510 2.3e-74 282.7 219 72.1
Lj8C602T7 Lonicera japonica HOM05D001880 ORTHO05D005098 4.9e-72 275.0 216 70.8
Haze_21860 Corylus avellana HOM05D001880 ORTHO05D005098 2.0e-70 269.6 353 48.7
Rhsim03G0044500 Rhododendron simsii HOM05D001880 ORTHO05D005098 5.9e-70 268.1 180 81.1
Sabra18G0038400 Salix brachista HOM05D001880 ORTHO05D005098 5.0e-69 265.0 165 81.2
AagrBONN_evm.TU.Sc2ySwM_228.2603 Anthoceros agrestis HOM05D001880 ORTHO05D005098 1.9e-68 263.1 144 82.6
Ah.10g035220 Amaranthus hybridus HOM05D001880 ORTHO05D005098 6.2e-67 258.1 217 67.3
MCO11G833 Micromonas commoda HOM05D001880 ORTHO05D005098 7.3e-60 234.6 217 58.1
PRCOL_00004463 Prasinoderma coloniale HOM05D001880 ORTHO05D005098 2.9e-56 222.6 233 54.1
CSS0023199 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 5.6e-52 208.4 264 52.7
MBI04_g19163_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D005098 4.7e-51 205.3 136 81.6
Cre06.g275300 Chlamydomonas reinhardtii HOM05D001880 ORTHO05D005098 3.2e-47 192.6 219 47.9
Cc00_g02820 Coffea canephora HOM05D001880 ORTHO05D005098 4.1e-47 192.2 108 78.7
Cc03_g15000 Coffea canephora HOM05D001880 ORTHO05D005098 4.1e-47 192.2 108 78.7
HPP92_023928 Vanilla planifolia HOM05D001880 ORTHO05D005098 3.9e-45 185.7 135 74.8
Cfa026630 Carpinus fangiana HOM05D004477 ORTHO05D005615 1.8e-42 176.8 204 46.1
Pp3c9_8200 Physcomitrium patens HOM05D001880 ORTHO05D005098 9.9e-41 171.0 106 78.3
Lj7A706T45 Lonicera japonica HOM05D001880 ORTHO05D005098 2.9e-40 169.5 114 79.8
HPP92_023929 Vanilla planifolia HOM05D001880 ORTHO05D005098 1.2e-38 164.1 84 86.9
Lj7A706G42 Lonicera japonica HOM05D001880 ORTHO05D001339 1.3e-37 160.6 85 88.2
Sabra06G0189300 Salix brachista HOM05D001880 ORTHO05D005098 6.6e-37 158.3 81 88.9
Zm00001eb036010 Zea mays HOM05D001880 ORTHO05D005098 8.7e-37 157.9 101 86.1
Zm00001eb052320 Zea mays HOM05D001880 ORTHO05D005098 8.7e-37 157.9 101 86.1
Zm00001eb071380 Zea mays HOM05D001880 ORTHO05D005098 8.7e-37 157.9 101 86.1
Zm00001eb291550 Zea mays HOM05D001880 ORTHO05D005098 8.7e-37 157.9 101 86.1
Zm00001eb391830 Zea mays HOM05D001880 ORTHO05D005098 8.7e-37 157.9 101 86.1
Os05g0221400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 1.6e-35 153.7 81 85.2
Cc00_g34580 Coffea canephora HOM05D001880 ORTHO05D005098 1.3e-24 117.5 71 69.0
Gorai.011G178000 Gossypium raimondii HOM05D001880 ORTHO05D005098 2.3e-21 106.7 74 82.4
CSS0036439 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 3.3e-20 102.8 63 85.7
Gorai.012G085200 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.4e-18 97.4 68 80.9
Gorai.011G118500 Gossypium raimondii HOM05D001880 ORTHO05D013650 2.6e-09 66.6 39 71.8
SalBow5G0200 Salvia bowleyana HOM05D001880 ORTHO05D355852 4.5e-09 65.9 48 66.7
SalBow8G1849 Salvia bowleyana HOM05D001880 ORTHO05D363534 4.5e-09 65.9 48 66.7
SalBow8G2043 Salvia bowleyana HOM05D001880 ORTHO05D356500 4.5e-09 65.9 48 66.7
Gorai.002G175500 Gossypium raimondii HOM05D001035 ORTHO05D013650 1.0e-08 64.7 39 69.2
SalBow6G5594 Salvia bowleyana HOM05D001880 ORTHO05D357349 1.7e-08 63.9 48 64.6


User provided reference genes

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