Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G6321 Papaver somniferum HOM05D005314 ORTHO05D006522 8.9e-185 650.2 346 100.0
PSO210G6435 Papaver somniferum HOM05D005314 ORTHO05D006522 3.4e-184 648.3 346 99.7
TAR369G0158 Trochodendron aralioides HOM05D005314 ORTHO05D006522 4.9e-159 564.7 346 86.7
TAR636G1106 Trochodendron aralioides HOM05D005314 ORTHO05D006522 4.9e-159 564.7 346 86.7
Dinv22878 Davidia involucrata HOM05D005314 ORTHO05D006522 3.5e-149 531.9 346 80.9
Prupe.1G409300 Prunus persica HOM05D005314 ORTHO05D006522 6.0e-149 531.2 346 79.2
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 7.9e-149 530.8 342 80.1
Nn8g38796 Nelumbo nucifera HOM05D005314 ORTHO05D006522 7.9e-149 530.8 351 80.6
RcHm_v2.0_Chr6g0311221 Rosa chinensis HOM05D005314 ORTHO05D006522 2.3e-148 529.3 346 80.1
COL.COLO4_21084 Corchorus olitorius HOM05D005314 ORTHO05D006522 1.9e-147 526.2 346 80.3
Thecc.09G057100 Theobroma cacao HOM05D005314 ORTHO05D006522 2.5e-147 525.8 346 79.2
Migut.A00114 Erythranthe guttata HOM05D005314 ORTHO05D006522 1.3e-146 523.5 346 78.3
CANSAT25G2280 Cannabis sativa HOM05D005314 ORTHO05D006522 3.7e-146 521.9 347 78.7
Cfa017974 Carpinus fangiana HOM05D005314 ORTHO05D006522 3.7e-146 521.9 346 78.0
Haze_18156 Corylus avellana HOM05D005314 ORTHO05D006522 3.7e-146 521.9 346 78.3
Manes.03G050000 Manihot esculenta HOM05D005314 ORTHO05D006522 6.2e-146 521.2 346 78.0
FvH4_2g31600 Fragaria vesca HOM05D005314 ORTHO05D006522 8.2e-146 520.8 346 78.6
Actinidia30326 Actinidia chinensis HOM05D005314 ORTHO05D006522 1.4e-145 520.0 347 78.4
QL02p000736 Quercus lobata HOM05D005314 ORTHO05D006522 1.8e-145 519.6 345 78.3
CSS0005464 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 4.0e-145 518.5 347 77.8
CiPaw.15G037000 Carya illinoinensis HOM05D005314 ORTHO05D006522 1.2e-144 516.9 346 77.2
Cc08_g10890 Coffea canephora HOM05D005314 ORTHO05D006522 1.2e-144 516.9 346 76.6
BolC9t59318H Brassica oleracea HOM05D005314 ORTHO05D006522 1.5e-144 516.5 344 76.5
TWI32G0330 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 1.5e-144 516.5 346 78.0
TWI34G0632 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 2.0e-144 516.2 346 77.5
MD15G1056700 Malus domestica HOM05D005314 ORTHO05D006522 2.6e-144 515.8 346 77.5
MSTRG.25961 Avicennia marina HOM05D005314 ORTHO05D006522 1.3e-143 513.5 346 76.3
C09p64870 Brassica napus HOM05D005314 ORTHO05D006522 1.3e-143 513.5 344 76.2
BcaNung02637 Brassica carinata HOM05D005314 ORTHO05D006522 2.9e-143 512.3 344 76.2
A10p25800 Brassica napus HOM05D005314 ORTHO05D006522 2.9e-143 512.3 344 75.9
Gorai.013G220600 Gossypium raimondii HOM05D005314 ORTHO05D006522 2.9e-143 512.3 346 76.9
Hma1.2p1_0544F.1_g175630 Hydrangea macrophylla HOM05D005314 ORTHO05D006522 2.9e-143 512.3 343 77.8
Gohir.D13G194600 Gossypium hirsutum HOM05D005314 ORTHO05D006522 3.8e-143 511.9 346 76.9
PGR044G2019 Punica granatum HOM05D005314 ORTHO05D006522 3.8e-143 511.9 347 78.4
Gohir.A07G021950 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.9e-142 509.6 346 76.6
MD08G1064900 Malus domestica HOM05D005314 ORTHO05D006522 2.5e-142 509.2 346 76.6
CsaV3_4G035770 Cucumis sativus L. HOM05D005314 ORTHO05D006522 4.2e-142 508.4 338 77.5
Gorai.001G022500 Gossypium raimondii HOM05D005314 ORTHO05D006522 7.1e-142 507.7 346 76.3
SalBow4G3021 Salvia bowleyana HOM05D005314 ORTHO05D006522 9.3e-142 507.3 346 76.3
Gohir.A13G187700 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.2e-141 506.9 346 76.3
GSVIVG01035376001 Vitis vinifera HOM05D005314 ORTHO05D006522 1.2e-141 506.9 349 77.4
ClCG05G017990 Citrullus lanatus HOM05D005314 ORTHO05D006522 2.1e-141 506.1 346 76.3
A02p01290 Brassica napus HOM05D005314 ORTHO05D006522 2.7e-141 505.8 344 75.6
BraA02t05108Z Brassica rapa HOM05D005314 ORTHO05D006522 2.7e-141 505.8 344 75.6
Sp6g31630 Schrenkiella parvula HOM05D005314 ORTHO05D006522 2.7e-141 505.8 344 75.6
Thhalv10014010m.g Eutrema salsugineum HOM05D005314 ORTHO05D006522 4.6e-141 505.0 344 75.6
BcaC03g13403 Brassica carinata HOM05D005314 ORTHO05D006522 7.9e-141 504.2 344 75.3
C02p05500 Brassica napus HOM05D005314 ORTHO05D006522 7.9e-141 504.2 344 75.3
BolC2t06496H Brassica oleracea HOM05D005314 ORTHO05D006522 7.9e-141 504.2 344 75.3
CiPaw.16G027100 Carya illinoinensis HOM05D005314 ORTHO05D006522 1.0e-140 503.8 346 76.3
BraA10t44644Z Brassica rapa HOM05D005314 ORTHO05D006522 1.3e-140 503.4 356 73.3
Eucgr.C03058 Eucalyptus grandis HOM05D005314 ORTHO05D006522 2.3e-140 502.7 346 76.3
Potri.018G060500 Populus trichocarpa HOM05D005314 ORTHO05D006522 2.3e-140 502.7 346 76.3
AL6G22740 Arabidopsis lyrata HOM05D005314 ORTHO05D006522 3.0e-140 502.3 338 75.7
Carub.0006s1050 Capsella rubella HOM05D005314 ORTHO05D006522 3.9e-140 501.9 337 75.7
AUR62009122 Chenopodium quinoa HOM05D005314 ORTHO05D006522 3.9e-140 501.9 344 75.3
AT5G11960 Arabidopsis thaliana HOM05D005314 ORTHO05D006522 5.1e-140 501.5 338 75.7
CAN.G130.11 Capsicum annuum HOM05D005314 ORTHO05D006522 8.7e-140 500.7 346 75.7
Potri.006G226000 Populus trichocarpa HOM05D005314 ORTHO05D006522 8.7e-140 500.7 346 76.9
THA.LOC104811236 Tarenaya hassleriana HOM05D005314 ORTHO05D006522 1.1e-139 500.4 344 75.3
SGA_v2.0_scaffold20G09204 Striga asiatica HOM05D005314 ORTHO05D006522 1.5e-139 500.0 385 69.4
Sopen06g012940 Solanum pennellii HOM05D005314 ORTHO05D006522 2.5e-139 499.2 346 75.1
Sed0001440 Sechium edule HOM05D005314 ORTHO05D006522 3.3e-139 498.8 338 76.6
Aa31LG3G15270 Aethionema arabicum HOM05D005314 ORTHO05D006522 4.3e-139 498.4 356 73.0
Solyc06g036780.3 Solanum lycopersicum HOM05D005314 ORTHO05D006522 9.7e-139 497.3 346 75.1
ECA233G4949 Erigeron canadensis HOM05D005314 ORTHO05D006522 4.8e-138 495.0 340 77.9
FAN27G1630 Fragaria x ananassa HOM05D005314 ORTHO05D006522 1.1e-137 493.8 346 75.7
Ca_13152_v3 Cicer arietinum L. HOM05D005314 ORTHO05D006522 4.1e-137 491.9 346 74.9
TPR.G13039 Trifolium pratense HOM05D005314 ORTHO05D006522 2.6e-136 489.2 348 74.7
Lj1g0000731 Lotus japonicus HOM05D005314 ORTHO05D006522 3.4e-136 488.8 346 73.4
Phvul.009G078900 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 4.5e-136 488.4 336 72.9
Lsat_1_v5_gn_6_14601 Lactuca sativa HOM05D005314 ORTHO05D006522 2.2e-135 486.1 340 77.1
Phvul.001G037500 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 2.2e-135 486.1 346 73.1
Glyma.06G053100 Glycine max HOM05D005314 ORTHO05D006522 2.9e-135 485.7 348 73.6
Peaxi162Scf01088g00005 Petunia axillaris HOM05D005314 ORTHO05D006522 8.5e-135 484.2 325 75.7
HanXRQChr08g0226511 Helianthus annuus HOM05D005314 ORTHO05D006522 1.1e-134 483.8 344 75.3
Ciclev10008891m.g Citrus clementina HOM05D005314 ORTHO05D006522 2.5e-134 482.6 338 75.7
Psat6g021480 Pisum sativum HOM05D005314 ORTHO05D006522 2.5e-134 482.6 346 74.3
Lalb_Chr11g0063171 Lupinus albus HOM05D005314 ORTHO05D006522 3.2e-134 482.3 346 72.8
MELO3C016882.2 Cucumis melo HOM05D005314 ORTHO05D006522 4.2e-134 481.9 338 74.9
Glyma.14G097400 Glycine max HOM05D005314 ORTHO05D006522 5.5e-134 481.5 352 71.9
Medtr1g015820 Medicago truncatula HOM05D005314 ORTHO05D006522 1.2e-133 480.3 348 74.1
Hund19438 Selenicereus undatus HOM05D005314 ORTHO05D006522 2.1e-133 479.6 344 73.5
Rhsim11G0042200 Rhododendron simsii HOM05D005314 ORTHO05D006522 7.9e-133 477.6 368 71.2
ATR0789G137 Amborella trichopoda HOM05D005314 ORTHO05D006522 1.4e-132 476.9 346 72.5
CDE06G1634 Ceratophyllum demersum HOM05D005314 ORTHO05D006522 3.9e-132 475.3 346 73.7
VMungo0647G2045 Vigna mungo HOM05D005314 ORTHO05D006522 4.3e-131 471.9 359 69.9
HPP92_007653 Vanilla planifolia HOM05D005314 ORTHO05D006522 2.2e-130 469.5 344 70.9
MBI01_g21122_MAGBIO Magnolia biondii HOM05D005314 ORTHO05D006522 2.6e-128 462.6 337 73.3
VMungo1309G2963 Vigna mungo HOM05D005314 ORTHO05D006522 1.7e-127 459.9 336 69.9
Sabra18G0054400 Salix brachista HOM05D005314 ORTHO05D006522 5.0e-127 458.4 416 63.0
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 1.9e-126 456.4 309 77.3
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 4.2e-126 455.3 309 77.0
Atru.chr7.1939 Acer truncatum HOM05D005314 ORTHO05D006522 7.2e-126 454.5 272 84.9
Lalb_Chr22g0356141 Lupinus albus HOM05D005314 ORTHO05D006522 3.6e-125 452.2 307 74.6
Lalb_Chr14g0366381 Lupinus albus HOM05D005314 ORTHO05D006522 2.8e-122 442.6 272 80.1
arahy.Tifrunner.gnm1.ann1.VQ1HGR Arachis hypogaea HOM05D005314 ORTHO05D006522 1.8e-121 439.9 346 70.5
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 1.9e-118 429.9 400 61.2
Glyma.04G052700 Glycine max HOM05D005314 ORTHO05D006522 3.2e-118 429.1 309 72.2
Sc23g0005690 Simmondsia chinensis HOM05D005314 ORTHO05D006522 3.2e-118 429.1 344 67.4
Lj8A530G14 Lonicera japonica HOM05D005314 ORTHO05D006522 1.4e-116 423.7 296 77.0
Glyma.17G227100 Glycine max HOM05D005314 ORTHO05D006522 4.4e-115 418.7 346 66.5
Oeu003996.1 Olea europaea HOM05D005314 ORTHO05D006522 5.3e-113 411.8 310 72.6
arahy.Tifrunner.gnm1.ann1.UTD444 Arachis hypogaea HOM05D005314 ORTHO05D006522 2.7e-109 399.4 346 63.3
arahy.Tifrunner.gnm1.ann1.GAY7D4 Arachis hypogaea HOM05D005314 ORTHO05D006522 3.3e-107 392.5 346 62.7
Sabra06G0174700 Salix brachista HOM05D005314 ORTHO05D006522 4.4e-107 392.1 419 56.1
vmacro00123 Vaccinium macrocarpon HOM05D005314 ORTHO05D006522 7.0e-105 384.8 293 71.3
Dinv28005 Davidia involucrata HOM05D005314 ORTHO05D006522 2.1e-101 373.2 222 82.9
Duzib150G1607 Durio zibethinus HOM05D005314 ORTHO05D006522 8.0e-101 371.3 222 82.0
unitig_88.g27677 Utricularia gibba HOM05D005314 ORTHO05D006522 7.5e-99 364.8 385 55.1
EL10Ac2g03829 Beta vulgaris HOM05D005314 ORTHO05D006522 3.1e-97 359.4 344 59.6
arahy.Tifrunner.gnm1.ann1.6D5JL1 Arachis hypogaea HOM05D005314 ORTHO05D006522 1.2e-93 347.4 346 59.5
Gohir.D07G021900 Gossypium hirsutum HOM05D005314 ORTHO05D006522 9.2e-89 331.3 204 80.9
Sed0024799 Sechium edule HOM05D005314 ORTHO05D006522 9.2e-89 331.3 243 72.4
Nitab4.5_0000972g0030 Nicotiana tabacum HOM05D005314 ORTHO05D006522 2.6e-83 313.2 436 47.9
Mapoly0049s0128 Marchantia polymorpha HOM05D005314 ORTHO05D006522 3.2e-81 306.2 335 50.1
Ah.10g034130 Amaranthus hybridus HOM05D005314 ORTHO05D006522 1.5e-75 287.3 250 64.8
Zm00001eb155260 Zea mays HOM05D005314 ORTHO05D006522 2.0e-75 287.0 250 62.4
Nitab4.5_0000268g0140 Nicotiana tabacum HOM05D005314 ORTHO05D006522 3.4e-75 286.2 345 50.7
MD11G1243300 Malus domestica HOM05D005314 ORTHO05D006522 7.0e-73 278.5 169 81.1
CARHR201170 Cardamine hirsuta HOM05D005314 ORTHO05D006522 1.5e-70 270.8 201 72.1
Pp3c7_50 Physcomitrium patens HOM05D005314 ORTHO05D006522 8.9e-68 261.5 290 47.6
Hund03325 Selenicereus undatus HOM05D005314 ORTHO05D006522 5.2e-60 235.7 260 53.5
Os01g0708300 Oryza sativa ssp. japonica HOM05D005314 ORTHO05D006522 5.1e-55 219.2 144 72.9
Cpa.g.sc7.160 Carica papaya HOM05D005314 ORTHO05D006522 4.3e-54 216.1 144 76.4
Lj7A260G18 Lonicera japonica HOM05D005314 ORTHO05D006522 5.3e-52 209.1 238 52.1
RcHm_v2.0_Chr1g0383701 Rosa chinensis HOM05D005314 ORTHO05D006522 2.4e-49 200.3 154 64.9
Cpa.g.sc7.159 Carica papaya HOM05D005314 ORTHO05D006522 3.5e-48 196.4 166 65.7
CBR_g50008 Chara braunii HOM05D005314 ORTHO05D006522 3.9e-47 193.0 360 36.7
AUR62039137 Chenopodium quinoa HOM05D005314 ORTHO05D006522 4.0e-44 183.0 131 72.5
CSS0003098 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 9.0e-44 181.8 110 83.6
arahy.Tifrunner.gnm1.ann1.IMU44M Arachis hypogaea HOM05D005314 ORTHO05D006522 9.9e-43 178.3 185 59.5
Cre10.g419700 Chlamydomonas reinhardtii HOM05D005314 ORTHO05D006522 7.9e-40 168.7 328 34.8
PRCOL_00001271 Prasinoderma coloniale HOM05D005314 ORTHO05D006522 3.7e-37 159.8 322 32.3
MCO12G408 Micromonas commoda HOM05D005314 ORTHO05D006522 5.8e-35 152.5 311 32.8
PGSC0003DMG400031356 Solanum tuberosum HOM05D005314 ORTHO05D006522 1.8e-31 141.0 125 65.6
BcaB03g16563 Brassica carinata HOM05D005314 ORTHO05D006522 1.3e-29 134.8 113 63.7
Oeu040341.1 Olea europaea HOM05D005314 ORTHO05D006522 6.5e-26 122.5 74 82.4
arahy.Tifrunner.gnm1.ann1.TY68CU Arachis hypogaea HOM05D005314 ORTHO05D005864 2.4e-20 104.0 107 63.6
CSS0034519 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 2.4e-20 104.0 95 64.2
SEGI_34785 Sequoiadendron giganteum HOM05D005314 ORTHO05D006522 6.9e-20 102.4 73 68.5
Gohir.D07G021800 Gossypium hirsutum HOM05D005314 ORTHO05D006522 4.5e-19 99.8 96 60.4


User provided reference genes

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