Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G5602 Papaver somniferum HOM05D005985 ORTHO05D007403 1.2e-129 466.5 220 100.0
PSO761G0261 Papaver somniferum HOM05D005985 ORTHO05D007403 4.4e-129 464.5 220 99.5
PSO144G0010 Papaver somniferum HOM05D005985 ORTHO05D007403 6.2e-123 444.1 219 94.1
Nn3g21870 Nelumbo nucifera HOM05D005985 ORTHO05D007403 2.1e-107 392.5 220 80.9
MBI18_g28902_MAGBIO Magnolia biondii HOM05D005985 ORTHO05D007403 2.6e-105 385.6 220 80.0
Dinv29531 Davidia involucrata HOM05D005985 ORTHO05D007403 2.2e-104 382.5 218 79.8
Gorai.011G204600 Gossypium raimondii HOM05D005985 ORTHO05D007403 4.9e-104 381.3 220 79.1
Atru.chr4.3125 Acer truncatum HOM05D005985 ORTHO05D007403 8.4e-104 380.6 219 78.5
Gohir.D10G182600 Gossypium hirsutum HOM05D005985 ORTHO05D007403 5.4e-103 377.9 220 78.6
Aqoxy2G02563 Aquilegia oxysepala HOM05D005985 ORTHO05D007403 7.1e-103 377.5 220 80.9
Gohir.A10G176000 Gossypium hirsutum HOM05D005985 ORTHO05D007403 1.2e-102 376.7 220 77.7
TWI09G1588 Tripterygium wilfordii HOM05D005985 ORTHO05D007403 1.6e-102 376.3 220 77.7
QL06p013713 Quercus lobata HOM05D005985 ORTHO05D007403 2.7e-102 375.6 219 77.6
CDE02G0842 Ceratophyllum demersum HOM05D005985 ORTHO05D007403 7.8e-102 374.0 220 76.4
EL10Ac3g06274 Beta vulgaris HOM05D005985 ORTHO05D007403 1.3e-101 373.2 220 78.6
Cfa015714 Carpinus fangiana HOM05D005985 ORTHO05D007403 2.3e-101 372.5 221 77.4
Manes.15G003600 Manihot esculenta HOM05D005985 ORTHO05D007403 3.0e-101 372.1 219 78.1
GSVIVG01017666001 Vitis vinifera HOM05D005985 ORTHO05D007403 3.9e-101 371.7 220 77.3
Haze_00800 Corylus avellana HOM05D005985 ORTHO05D007403 8.7e-101 370.5 220 76.4
AUR62029991 Chenopodium quinoa HOM05D005985 ORTHO05D007403 1.5e-100 369.8 220 78.6
Peaxi162Scf00103g01922 Petunia axillaris HOM05D005985 ORTHO05D007403 1.9e-100 369.4 220 76.4
AUR62002570 Chenopodium quinoa HOM05D005985 ORTHO05D007403 5.6e-100 367.9 220 78.6
Duzib128G0500 Durio zibethinus HOM05D005985 ORTHO05D007403 5.6e-100 367.9 220 75.9
Lj4g0025954 Lotus japonicus HOM05D005985 ORTHO05D007403 5.6e-100 367.9 219 77.6
Phvul.002G189300 Phaseolus vulgaris HOM05D005985 ORTHO05D007403 5.6e-100 367.9 220 77.7
VMungo0251G0059 Vigna mungo HOM05D005985 ORTHO05D007403 5.6e-100 367.9 220 78.2
Eucgr.G02036 Eucalyptus grandis HOM05D005985 ORTHO05D007403 7.3e-100 367.5 219 74.9
Ca_18238_v3 Cicer arietinum L. HOM05D005985 ORTHO05D007403 9.6e-100 367.1 220 76.8
Duzib128G2054 Durio zibethinus HOM05D005985 ORTHO05D007403 9.6e-100 367.1 220 75.9
Duzib212G0534 Durio zibethinus HOM05D005985 ORTHO05D007403 9.6e-100 367.1 220 75.9
Medtr4g094720 Medicago truncatula HOM05D005985 ORTHO05D007403 9.6e-100 367.1 220 77.3
Solyc03g096040.3 Solanum lycopersicum HOM05D005985 ORTHO05D007403 1.6e-99 366.3 220 75.9
Lj6A699T60 Lonicera japonica HOM05D005985 ORTHO05D007403 2.1e-99 365.9 220 76.4
HanXRQChr07g0194341 Helianthus annuus HOM05D005985 ORTHO05D007403 2.8e-99 365.5 220 75.5
PGR031G1426 Punica granatum HOM05D005985 ORTHO05D007403 3.6e-99 365.2 219 75.3
Sopen03g026120 Solanum pennellii HOM05D005985 ORTHO05D007403 3.6e-99 365.2 220 75.5
arahy.Tifrunner.gnm1.ann1.7BH383 Arachis hypogaea HOM05D005985 ORTHO05D007403 6.2e-99 364.4 220 76.4
arahy.Tifrunner.gnm1.ann1.BM2Q5K Arachis hypogaea HOM05D005985 ORTHO05D007403 6.2e-99 364.4 220 76.4
Lalb_Chr07g0188301 Lupinus albus HOM05D005985 ORTHO05D007403 8.1e-99 364.0 220 78.2
Potri.008G099900 Populus trichocarpa HOM05D005985 ORTHO05D007403 1.1e-98 363.6 219 75.8
RcHm_v2.0_Chr4g0426681 Rosa chinensis HOM05D005985 ORTHO05D007403 1.4e-98 363.2 220 76.4
SGA_v2.0_scaffold64G22045 Striga asiatica HOM05D005985 ORTHO05D007403 1.4e-98 363.2 219 75.3
Lsat_1_v5_gn_6_69481 Lactuca sativa HOM05D005985 ORTHO05D007403 2.4e-98 362.5 220 75.0
Sc24g0001290 Simmondsia chinensis HOM05D005985 ORTHO05D007403 2.4e-98 362.5 220 75.9
TAR362G0466 Trochodendron aralioides HOM05D005985 ORTHO05D007403 2.4e-98 362.5 246 69.1
Glyma.08G088000 Glycine max HOM05D005985 ORTHO05D007403 3.1e-98 362.1 220 77.7
TPR.G31247 Trifolium pratense HOM05D005985 ORTHO05D007403 4.0e-98 361.7 220 75.5
CANSAT78G1051 Cannabis sativa HOM05D005985 ORTHO05D007403 1.2e-97 360.1 220 74.5
PGSC0003DMG400027720 Solanum tuberosum HOM05D005985 ORTHO05D007403 1.5e-97 359.8 220 75.5
Manes.03G210400 Manihot esculenta HOM05D005985 ORTHO05D007403 2.6e-97 359.0 219 74.0
Psat7g085840 Pisum sativum HOM05D005985 ORTHO05D007403 2.6e-97 359.0 220 75.5
ClCG05G006800 Citrullus lanatus HOM05D005985 ORTHO05D007403 3.4e-97 358.6 220 75.0
MD13G1144500 Malus domestica HOM05D005985 ORTHO05D007403 3.4e-97 358.6 220 75.0
Sabra08G0075600 Salix brachista HOM05D005985 ORTHO05D007403 4.4e-97 358.2 219 75.3
ECA233G5395 Erigeron canadensis HOM05D005985 ORTHO05D007403 5.8e-97 357.8 220 74.5
Cpa.g.sc146.45 Carica papaya HOM05D005985 ORTHO05D007403 9.9e-97 357.1 219 71.2
Nitab4.5_0000781g0010 Nicotiana tabacum HOM05D005985 ORTHO05D007403 1.3e-96 356.7 220 73.6
FAN17G1815 Fragaria x ananassa HOM05D005985 ORTHO05D007403 2.9e-96 355.5 220 74.5
Prupe.1G109000 Prunus persica HOM05D005985 ORTHO05D007403 4.9e-96 354.8 221 74.2
Nitab4.5_0000204g0010 Nicotiana tabacum HOM05D005985 ORTHO05D007403 8.4e-96 354.0 214 73.4
DCAR_023383 Daucus carota HOM05D005985 ORTHO05D007403 1.1e-95 353.6 222 73.9
CsaV3_3G015450 Cucumis sativus L. HOM05D005985 ORTHO05D007403 4.2e-95 351.7 220 71.8
ATR0796G055 Amborella trichopoda HOM05D005985 ORTHO05D007403 5.4e-95 351.3 220 73.2
HPP92_020535 Vanilla planifolia HOM05D005985 ORTHO05D007403 7.1e-95 350.9 219 73.1
Aa31LG10G5610 Aethionema arabicum HOM05D005985 ORTHO05D007403 9.3e-95 350.5 220 74.5
CSS0012631 Camellia sinensis var. sinensis HOM05D005985 ORTHO05D007403 1.2e-94 350.1 229 70.7
SalBow8G2871 Salvia bowleyana HOM05D005985 ORTHO05D007403 1.2e-94 350.1 219 72.6
Actinidia02521 Actinidia chinensis HOM05D005985 ORTHO05D007403 1.6e-94 349.7 221 71.9
MELO3C006744.2 Cucumis melo HOM05D005985 ORTHO05D007403 6.0e-94 347.8 234 69.2
Ciclev10007138m.g Citrus clementina HOM05D005985 ORTHO05D007403 7.9e-94 347.4 211 77.3
Os07g0638300 Oryza sativa ssp. japonica HOM05D005985 ORTHO05D007403 1.3e-93 346.7 219 72.1
Oeu020283.1 Olea europaea HOM05D005985 ORTHO05D007403 6.6e-93 344.4 220 72.3
Carub.0001s3723 Capsella rubella HOM05D005985 ORTHO05D007403 8.7e-93 344.0 221 73.3
FvH4_4g21120 Fragaria vesca HOM05D005985 ORTHO05D007403 8.7e-93 344.0 211 75.4
Sp1g35100 Schrenkiella parvula HOM05D005985 ORTHO05D007403 1.9e-92 342.8 221 72.4
AT1G48130 Arabidopsis thaliana HOM05D005985 ORTHO05D007403 2.5e-92 342.4 221 72.9
THA.LOC104821806 Tarenaya hassleriana HOM05D005985 ORTHO05D007403 4.3e-92 341.7 217 72.4
Duzib212G0439 Durio zibethinus HOM05D005985 ORTHO05D007403 7.4e-92 340.9 220 72.3
Nn4g25416 Nelumbo nucifera HOM05D005985 ORTHO05D007403 1.3e-91 340.1 300 56.3
AL1G54700 Arabidopsis lyrata HOM05D005985 ORTHO05D007403 3.6e-91 338.6 221 71.9
CARHR037770 Cardamine hirsuta HOM05D005985 ORTHO05D007403 3.1e-90 335.5 221 70.6
A05p21210 Brassica napus HOM05D005985 ORTHO05D007403 1.2e-89 333.6 221 70.6
BcaC05g27595 Brassica carinata HOM05D005985 ORTHO05D007403 1.5e-89 333.2 221 70.1
Thhalv10012121m.g Eutrema salsugineum HOM05D005985 ORTHO05D007403 2.0e-89 332.8 221 71.0
unitig_88.g27789 Utricularia gibba HOM05D000412 ORTHO05D007403 3.4e-89 332.0 219 68.9
BolC6t37315H Brassica oleracea HOM05D005985 ORTHO05D007403 4.5e-89 331.6 221 69.7
Migut.O00392 Erythranthe guttata HOM05D005985 ORTHO05D007403 7.6e-89 330.9 223 69.5
C05p35800 Brassica napus HOM05D005985 ORTHO05D007403 1.3e-88 330.1 221 69.2
BolC5t32296H Brassica oleracea HOM05D005985 ORTHO05D007403 2.2e-88 329.3 221 69.7
Rhsim02G0000600 Rhododendron simsii HOM05D005985 ORTHO05D007403 1.9e-87 326.2 220 67.7
BcaB02g10720 Brassica carinata HOM05D005985 ORTHO05D007403 5.5e-87 324.7 221 68.3
Migut.G00012 Erythranthe guttata HOM05D005985 ORTHO05D007403 7.1e-87 324.3 222 69.8
BraA05t21027Z Brassica rapa HOM05D005985 ORTHO05D007403 1.2e-86 323.6 236 66.1
BraA05t20750Z Brassica rapa HOM05D005985 ORTHO05D007403 1.6e-86 323.2 236 65.7
Os07g0638400 Oryza sativa ssp. japonica HOM05D005985 ORTHO05D007403 2.1e-86 322.8 219 65.8
Zm00001eb328770 Zea mays HOM05D005985 ORTHO05D007403 6.0e-86 321.2 230 65.2
SEGI_14508 Sequoiadendron giganteum HOM05D005985 ORTHO05D007403 8.7e-85 317.4 215 66.0
SMO367G0796 Selaginella moellendorffii HOM05D005985 ORTHO05D007403 1.9e-84 316.2 219 63.5
AagrBONN_evm.TU.Sc2ySwM_228.1443 Anthoceros agrestis HOM05D005985 ORTHO05D007403 1.2e-81 307.0 219 64.8
Mapoly0057s0102 Marchantia polymorpha HOM05D005985 ORTHO05D007403 3.8e-80 302.0 217 63.1
Pp3c22_8470 Physcomitrium patens HOM05D005985 ORTHO05D007403 1.9e-79 299.7 217 63.6
CAN.G546.41 Capsicum annuum HOM05D005985 ORTHO05D007403 4.2e-79 298.5 220 64.5
CBR_g8949 Chara braunii HOM05D005985 ORTHO05D007403 2.8e-75 285.8 216 61.1
COL.COLO4_34540 Corchorus olitorius HOM05D005985 ORTHO05D007403 1.5e-73 280.0 167 77.2
Pp3c20_21100 Physcomitrium patens HOM05D005985 ORTHO05D007403 2.5e-71 272.7 214 55.6
Pp3c10_21340 Physcomitrium patens HOM05D005985 ORTHO05D007403 4.2e-71 271.9 214 55.6
Mapoly0042s0090 Marchantia polymorpha HOM05D005985 ORTHO05D007403 6.1e-70 268.1 214 55.1
AagrBONN_evm.TU.Sc2ySwM_117.1081 Anthoceros agrestis HOM05D005985 ORTHO05D007403 2.3e-69 266.2 215 54.4
SEGI_03003 Sequoiadendron giganteum HOM05D005985 ORTHO05D007403 8.7e-69 264.2 214 54.7
SMO147G0228 Selaginella moellendorffii HOM05D005985 ORTHO05D007403 2.4e-66 256.1 213 52.1
PRCOL_00004927 Prasinoderma coloniale HOM05D005985 ORTHO05D007403 5.1e-61 238.4 219 48.9
AagrBONN_evm.TU.Sc2ySwM_228.1273 Anthoceros agrestis HOM05D005985 ORTHO05D007403 1.2e-57 227.3 218 46.8
Thecc.04G309900 Theobroma cacao HOM05D005985 ORTHO05D007403 2.8e-51 206.1 130 74.6
Cfa026758 Carpinus fangiana HOM05D005985 ORTHO05D007403 3.1e-50 202.6 217 43.8
Haze_27189 Corylus avellana HOM05D005985 ORTHO05D007403 5.0e-48 195.3 214 45.8
AagrBONN_evm.TU.Sc2ySwM_344.4472 Anthoceros agrestis HOM05D005985 ORTHO05D007403 1.6e-46 190.3 209 42.6
Glyma.05G133500 Glycine max HOM05D005985 ORTHO05D007403 4.7e-46 188.7 108 76.9
Glyma.05G133466 Glycine max HOM05D005985 ORTHO05D007403 3.8e-40 169.1 109 77.1
Nn1g05419 Nelumbo nucifera HOM05D005985 ORTHO05D007403 8.0e-38 161.4 89 77.5
MD16G1139600 Malus domestica HOM05D005985 ORTHO05D007403 1.5e-36 157.1 187 48.1
GSVIVG01034909001 Vitis vinifera HOM05D005985 ORTHO05D007403 3.4e-36 156.0 117 63.2
C06p21300 Brassica napus HOM05D005985 ORTHO05D007403 2.4e-34 149.8 87 69.0
Nn1g05808 Nelumbo nucifera HOM05D005985 ORTHO05D007403 3.5e-33 146.0 89 73.0
GSVIVG01017665001 Vitis vinifera HOM05D005985 ORTHO05D007403 1.2e-28 131.0 98 62.2
Gorai.001G249700 Gossypium raimondii HOM05D005985 ORTHO05D007403 7.5e-28 128.3 75 74.7
Gohir.D01G126866 Gossypium hirsutum HOM05D005985 ORTHO05D007403 3.1e-26 122.9 74 73.0
Gorai.002G157500 Gossypium raimondii HOM05D005985 ORTHO05D007403 3.8e-24 115.9 74 68.9
Nitab4.5_0001287g0150 Nicotiana tabacum HOM05D003127 ORTHO05D003709 1.5e-20 104.0 181 32.6
CAN.G574.32 Capsicum annuum HOM05D003127 ORTHO05D003709 7.5e-20 101.7 181 32.0
CAN.G1245.19 Capsicum annuum HOM05D003127 ORTHO05D003709 9.8e-20 101.3 181 32.0
Nitab4.5_0000020g0330 Nicotiana tabacum HOM05D003127 ORTHO05D003709 9.8e-20 101.3 181 32.0
Sopen01g003280 Solanum pennellii HOM05D003127 ORTHO05D003709 9.8e-20 101.3 181 32.0
Nitab4.5_0004677g0020 Nicotiana tabacum HOM05D003127 ORTHO05D003709 1.3e-19 100.9 181 32.0
Solyc10g082030.2 Solanum lycopersicum HOM05D003127 ORTHO05D003709 1.3e-19 100.9 181 32.0
Sopen10g032540 Solanum pennellii HOM05D003127 ORTHO05D003709 1.3e-19 100.9 181 32.0
PGSC0003DMG400016387 Solanum tuberosum HOM05D003127 ORTHO05D003709 1.3e-19 100.9 182 33.0
PGSC0003DMG400028238 Solanum tuberosum HOM05D003127 ORTHO05D003709 1.3e-19 100.9 181 32.0
Nitab4.5_0010740g0010 Nicotiana tabacum HOM05D003127 ORTHO05D003709 1.7e-19 100.5 181 31.5
Solyc01g007740.4 Solanum lycopersicum HOM05D003127 ORTHO05D003709 2.9e-19 99.8 181 31.5
MSTRG.5906 Avicennia marina HOM05D003127 ORTHO05D003709 8.3e-19 98.2 181 30.9
Cc03_g00310 Coffea canephora HOM05D005985 ORTHO05D007403 1.1e-18 97.8 62 74.2
Aa31sc52G110 Aethionema arabicum HOM05D003127 ORTHO05D003709 1.8e-18 97.1 181 29.8
Glyma.02G198400 Glycine max HOM05D003127 ORTHO05D003709 2.4e-18 96.7 181 30.9
Glyma.10G078400 Glycine max HOM05D003127 ORTHO05D003709 2.4e-18 96.7 181 30.9
Potri.006G204900 Populus trichocarpa HOM05D003127 ORTHO05D003709 7.0e-18 95.1 181 30.4
BcaB06g25601 Brassica carinata HOM05D003127 ORTHO05D003709 1.6e-17 94.0 181 29.8
BcaC05g29348 Brassica carinata HOM05D003127 ORTHO05D003709 1.6e-17 94.0 181 29.8
A05p37710 Brassica napus HOM05D003127 ORTHO05D003709 1.6e-17 94.0 181 29.8
C05p56310 Brassica napus HOM05D003127 ORTHO05D003709 1.6e-17 94.0 181 29.8
BraA05t22566Z Brassica rapa HOM05D003127 ORTHO05D003709 1.6e-17 94.0 181 29.8
TWI53G2011 Tripterygium wilfordii HOM05D003127 ORTHO05D003709 3.5e-17 92.8 181 29.3
MD14G1036400 Malus domestica HOM05D003127 ORTHO05D003709 3.9e-16 89.4 184 29.9
MCO10G030 Micromonas commoda HOM05D003127 ORTHO05D003709 4.7e-14 82.4 181 28.7
PRCOL_00002734 Prasinoderma coloniale HOM05D003127 ORTHO05D003709 3.1e-13 79.7 198 26.3
Cre17.g743897 Chlamydomonas reinhardtii HOM05D003127 ORTHO05D003709 2.6e-12 76.6 185 27.6
Glyma.19G198200 Glycine max HOM05D003127 ORTHO05D003709 1.1e-10 71.2 119 29.4
Lalb_Chr13g0293491 Lupinus albus HOM05D005985 ORTHO05D007403 1.2e-09 67.8 39 74.4
BcaC01g01496 Brassica carinata HOM05D005985 ORTHO05D007403 4.6e-09 65.9 76 43.4
Lalb_Chr13g0293501 Lupinus albus HOM05D005985 ORTHO05D007403 1.1e-07 61.2 45 62.2
FvH4_4g15322 Fragaria vesca HOM05D003127 ORTHO05D000062 9.5e-07 58.2 76 38.2
DCAR_011918 Daucus carota HOM05D004597 ORTHO05D005629 1.6e-06 57.4 157 21.0
FvH4_4g15580 Fragaria vesca HOM05D003127 ORTHO05D003768 2.8e-06 56.6 74 36.5
FAN12G2755 Fragaria x ananassa HOM05D003127 ORTHO05D003709 8.1e-06 55.1 64 40.6


User provided reference genes

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