Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 5.7e-101 370.9 190 100.0
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 1.1e-91 340.1 178 97.8
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 4.0e-70 268.5 171 77.8
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 3.4e-69 265.4 174 77.6
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 4.4e-69 265.0 177 74.6
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 4.4e-69 265.0 169 77.5
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 9.9e-69 263.8 170 77.1
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 2.9e-68 262.3 171 76.6
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 4.1e-67 258.5 171 73.7
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 2.1e-66 256.1 146 93.2
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 2.7e-66 255.8 170 74.7
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 4.6e-66 255.0 171 75.4
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 1.3e-65 253.4 170 75.3
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 1.7e-65 253.1 175 75.4
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 2.3e-65 252.7 170 72.9
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 3.0e-65 252.3 169 73.4
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 8.6e-65 250.8 171 74.3
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 2.5e-64 249.2 172 73.3
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 7.3e-64 247.7 170 70.6
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 7.3e-64 247.7 173 72.3
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 1.6e-63 246.5 171 71.3
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 2.1e-63 246.1 172 73.3
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 2.8e-63 245.7 172 75.0
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 3.6e-63 245.4 170 70.6
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 6.2e-63 244.6 170 72.9
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 8.1e-63 244.2 170 72.4
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 1.4e-62 243.4 163 74.8
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 1.4e-62 243.4 173 73.4
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 2.4e-62 242.7 178 70.2
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 4.0e-62 241.9 170 71.2
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 5.2e-62 241.5 180 68.9
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 1.2e-61 240.4 191 66.0
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 1.5e-61 240.0 170 69.4
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 2.0e-61 239.6 169 71.0
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 2.6e-61 239.2 169 72.2
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 3.4e-61 238.8 170 71.2
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 5.8e-61 238.0 177 69.5
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 5.8e-61 238.0 178 69.7
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 5.8e-61 238.0 169 71.6
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 7.6e-61 237.7 172 70.3
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 9.9e-61 237.3 170 70.6
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 1.7e-60 236.5 169 71.6
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 2.2e-60 236.1 173 69.9
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 3.8e-60 235.3 167 71.9
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 4.9e-60 235.0 171 69.0
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 8.4e-60 234.2 165 71.5
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 8.4e-60 234.2 165 71.5
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 1.1e-59 233.8 169 70.4
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 1.9e-59 233.0 169 72.2
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 1.9e-59 233.0 173 69.4
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 1.9e-59 233.0 172 65.7
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 2.4e-59 232.6 200 62.5
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 3.2e-59 232.3 170 70.0
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 3.2e-59 232.3 170 71.2
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 4.2e-59 231.9 172 70.9
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 5.4e-59 231.5 172 70.3
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 7.1e-59 231.1 165 70.9
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 7.1e-59 231.1 165 70.9
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 9.3e-59 230.7 173 68.2
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 1.2e-58 230.3 172 68.0
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 1.2e-58 230.3 170 70.0
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 1.6e-58 229.9 173 67.6
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 2.1e-58 229.6 165 70.3
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 3.5e-58 228.8 170 69.4
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 4.6e-58 228.4 170 67.1
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 4.6e-58 228.4 170 67.1
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 4.6e-58 228.4 170 67.1
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 6.0e-58 228.0 163 71.8
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 7.8e-58 227.6 173 65.9
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 7.8e-58 227.6 173 65.9
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 7.8e-58 227.6 169 69.2
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 1.3e-57 226.9 169 70.4
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 1.3e-57 226.9 170 68.2
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 1.7e-57 226.5 173 67.6
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 1.7e-57 226.5 172 65.7
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 1.7e-57 226.5 160 72.5
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 3.0e-57 225.7 173 67.1
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 3.0e-57 225.7 169 68.0
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 3.0e-57 225.7 165 72.1
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 3.9e-57 225.3 171 68.4
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 5.1e-57 224.9 160 72.5
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 5.1e-57 224.9 190 63.7
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 6.6e-57 224.6 172 66.3
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 6.6e-57 224.6 173 65.3
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 6.6e-57 224.6 173 65.3
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 6.6e-57 224.6 173 65.3
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 6.6e-57 224.6 176 68.8
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 8.7e-57 224.2 181 66.9
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 1.1e-56 223.8 166 68.1
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 1.5e-56 223.4 186 62.9
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 1.9e-56 223.0 159 71.1
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 1.9e-56 223.0 169 67.5
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 2.5e-56 222.6 178 64.0
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 3.3e-56 222.2 170 64.1
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 4.3e-56 221.9 168 69.0
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 4.3e-56 221.9 171 66.7
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 4.3e-56 221.9 186 63.4
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 5.6e-56 221.5 169 67.5
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 7.3e-56 221.1 163 68.1
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 7.3e-56 221.1 219 57.1
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 9.6e-56 220.7 165 69.1
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 1.6e-55 219.9 165 67.9
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 1.6e-55 219.9 186 64.5
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 8.1e-55 217.6 177 64.4
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 8.1e-55 217.6 169 65.7
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 1.4e-54 216.9 173 64.7
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 2.4e-54 216.1 173 63.0
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 2.4e-54 216.1 186 63.4
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 4.0e-54 215.3 155 71.6
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 4.0e-54 215.3 158 68.4
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 6.9e-54 214.5 161 62.1
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 2.0e-53 213.0 178 62.9
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 5.8e-53 211.5 170 64.1
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 7.6e-53 211.1 158 67.7
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 9.9e-53 210.7 170 61.2
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 1.3e-52 210.3 192 61.5
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 1.3e-52 210.3 202 57.4
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 2.2e-52 209.5 170 65.9
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 2.9e-52 209.1 171 60.8
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 4.9e-52 208.4 178 61.2
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 8.4e-52 207.6 162 61.7
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 1.9e-51 206.5 197 58.9
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 1.6e-50 203.4 162 59.3
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 3.5e-50 202.2 156 67.3
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 4.6e-50 201.8 146 69.9
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.7e-49 199.9 153 67.3
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 1.7e-49 199.9 153 67.3
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.3e-49 199.5 153 66.7
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 8.7e-49 197.6 154 66.9
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 3.6e-47 192.2 121 78.5
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 1.1e-46 190.7 120 80.0
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 1.8e-46 189.9 130 72.3
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 4.5e-45 185.3 133 72.9
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 5.8e-45 184.9 130 71.5
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 7.6e-45 184.5 162 63.0
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 3.8e-44 182.2 124 75.0
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 6.4e-44 181.4 123 74.8
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 1.4e-43 180.3 124 74.2
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 1.9e-43 179.9 120 75.8
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 4.2e-43 178.7 153 64.1
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 1.2e-42 177.2 119 73.9
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 1.6e-42 176.8 149 55.7
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 7.9e-42 174.5 145 59.3
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 6.7e-41 171.4 162 54.3
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.9e-40 169.9 148 57.4
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 7.4e-40 167.9 144 56.9
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 2.1e-39 166.4 120 65.8
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 4.0e-38 162.2 119 70.6
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 4.0e-38 162.2 130 63.1
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 8.4e-36 154.5 163 49.1
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 1.1e-35 154.1 168 50.6
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 2.1e-34 149.8 162 45.7
BcaB01g01455 Brassica carinata HOM05D004360 ORTHO05D005195 5.3e-30 135.2 89 75.3
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 5.9e-29 131.7 112 58.9
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 3.8e-28 129.0 108 61.1
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 1.4e-27 127.1 112 60.7
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 1.8e-22 110.2 150 44.7
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 1.0e-20 104.4 90 62.2
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.1e-14 84.3 101 45.5
arahy.Tifrunner.gnm1.ann1.B7FYB2 Arachis hypogaea HOM05D001689 ORTHO05D001643 2.3e-09 66.6 44 75.0
Dinv02982 Davidia involucrata HOM05D004360 ORTHO05D005195 5.1e-09 65.5 46 76.1
Dinv17160 Davidia involucrata HOM05D004360 ORTHO05D005195 5.1e-09 65.5 46 76.1
Dinv04074 Davidia involucrata HOM05D004360 ORTHO05D005195 3.3e-08 62.8 47 72.3
Dinv08764 Davidia involucrata HOM05D004360 ORTHO05D005195 9.7e-08 61.2 46 69.6
TPR.G39583 Trifolium pratense HOM05D004360 ORTHO05D005195 1.3e-07 60.8 48 56.2


User provided reference genes

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