Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 3.2e-102 375.2 199 100.0
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.3e-68 263.5 191 72.8
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 1.1e-67 260.4 199 68.3
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 6.3e-66 254.6 199 67.8
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 1.4e-65 253.4 179 70.9
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 1.4e-65 253.4 195 65.6
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 4.1e-65 251.9 205 62.0
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 4.5e-64 248.4 175 72.6
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 4.5e-64 248.4 180 68.9
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 7.7e-64 247.7 181 69.6
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.3e-63 246.9 199 64.3
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.3e-63 246.9 199 64.8
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 2.9e-63 245.7 199 64.8
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 3.8e-63 245.4 192 67.2
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 5.0e-63 245.0 195 65.1
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 5.0e-63 245.0 184 66.3
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 6.5e-63 244.6 197 64.5
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 1.1e-62 243.8 199 66.8
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 1.1e-62 243.8 195 63.6
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 1.4e-62 243.4 199 65.3
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 1.4e-62 243.4 197 60.9
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 3.2e-62 242.3 197 64.5
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 7.2e-62 241.1 197 64.0
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 7.2e-62 241.1 169 71.6
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 2.1e-61 239.6 199 65.3
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 2.7e-61 239.2 188 63.8
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 4.6e-61 238.4 199 64.8
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 4.6e-61 238.4 167 68.9
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 1.0e-60 237.3 200 61.5
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 2.3e-60 236.1 202 61.9
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 3.0e-60 235.7 192 66.1
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 3.9e-60 235.3 169 68.6
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 3.9e-60 235.3 206 59.7
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 3.9e-60 235.3 189 63.5
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 5.1e-60 235.0 190 65.3
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 8.8e-60 234.2 180 64.4
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 1.1e-59 233.8 189 65.6
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.1e-59 233.8 191 63.4
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 1.1e-59 233.8 193 65.8
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 1.1e-59 233.8 199 62.8
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 1.5e-59 233.4 197 64.5
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 1.5e-59 233.4 173 70.5
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 2.0e-59 233.0 199 61.3
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 2.6e-59 232.6 199 61.3
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 3.3e-59 232.3 180 63.9
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 3.3e-59 232.3 173 68.8
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 3.3e-59 232.3 173 69.4
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 1.7e-58 229.9 185 62.7
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 2.2e-58 229.6 198 61.1
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 2.2e-58 229.6 191 62.8
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 2.2e-58 229.6 180 60.6
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 2.2e-58 229.6 177 66.1
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 2.2e-58 229.6 180 65.0
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 2.8e-58 229.2 186 64.0
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 3.7e-58 228.8 192 60.9
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 4.8e-58 228.4 190 60.0
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 6.3e-58 228.0 180 64.4
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 8.2e-58 227.6 192 60.9
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 1.1e-57 227.3 179 62.0
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 1.1e-57 227.3 200 59.0
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 2.4e-57 226.1 180 62.2
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 2.4e-57 226.1 167 63.5
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 3.1e-57 225.7 177 62.7
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 5.3e-57 224.9 176 65.9
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 6.9e-57 224.6 198 58.6
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 6.9e-57 224.6 202 59.4
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.2e-56 223.8 196 58.2
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 1.2e-56 223.8 191 61.3
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 1.2e-56 223.8 187 59.4
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 2.0e-56 223.0 197 58.4
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 2.0e-56 223.0 150 69.3
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 2.0e-56 223.0 209 57.4
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 2.6e-56 222.6 167 66.5
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 3.4e-56 222.2 192 62.0
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 3.4e-56 222.2 192 62.0
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 3.4e-56 222.2 200 59.5
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 4.5e-56 221.9 161 66.5
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 4.5e-56 221.9 184 62.5
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 4.5e-56 221.9 207 58.5
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 4.5e-56 221.9 207 58.5
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 5.9e-56 221.5 190 62.1
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 5.9e-56 221.5 190 62.1
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 5.9e-56 221.5 180 62.2
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 7.7e-56 221.1 194 61.9
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 1.0e-55 220.7 200 59.0
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 2.9e-55 219.2 194 59.3
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 5.0e-55 218.4 200 58.0
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 1.4e-54 216.9 205 58.0
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 2.5e-54 216.1 177 59.9
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 2.5e-54 216.1 205 55.6
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 3.2e-54 215.7 169 63.3
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 3.2e-54 215.7 200 58.0
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 4.2e-54 215.3 173 63.6
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 4.2e-54 215.3 197 60.9
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 5.5e-54 214.9 177 65.5
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 5.5e-54 214.9 200 58.0
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 7.2e-54 214.5 189 58.7
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 9.4e-54 214.2 180 61.7
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 1.2e-53 213.8 177 65.0
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 6.1e-53 211.5 196 57.7
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 6.1e-53 211.5 179 59.8
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 1.0e-52 210.7 169 62.7
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 2.3e-52 209.5 176 60.8
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 2.0e-51 206.5 194 57.7
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 2.0e-51 206.5 175 61.1
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 3.3e-51 205.7 225 53.8
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 3.3e-51 205.7 160 66.2
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 3.3e-51 205.7 160 66.2
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 9.7e-51 204.1 181 58.6
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 1.7e-50 203.4 190 56.3
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 3.7e-50 202.2 182 58.2
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 8.2e-50 201.1 172 57.6
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 1.4e-49 200.3 215 52.1
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 1.4e-49 200.3 172 58.7
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 5.3e-49 198.4 170 58.2
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 9.1e-49 197.6 229 48.5
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 1.6e-48 196.8 183 58.5
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.6e-48 196.1 166 57.8
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 6.5e-47 191.4 142 64.8
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 5.5e-46 188.3 178 59.6
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.8e-44 183.3 187 51.3
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 3.7e-42 175.6 177 53.1
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 8.2e-42 174.5 167 54.5
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.2e-40 170.6 165 52.1
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 2.2e-39 166.4 215 47.0
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.1e-38 164.1 164 50.0
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 4.2e-38 162.2 156 50.0
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 1.8e-36 156.8 154 54.5
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 7.5e-35 151.4 163 47.2
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 1.6e-32 143.7 103 68.9
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.7e-31 140.2 113 61.9
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 8.5e-31 137.9 172 44.2
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 7.2e-30 134.8 171 40.9
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 9.5e-30 134.4 126 54.8
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 8.0e-29 131.3 165 43.0
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 8.0e-29 131.3 88 69.3
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.0e-28 131.0 105 62.9
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 3.0e-28 129.4 84 73.8
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 8.8e-28 127.9 113 61.1
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.5e-27 127.1 101 60.4
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 2.6e-27 126.3 100 62.0
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 5.4e-25 118.6 139 44.6
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 2.5e-22 109.8 95 60.0
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 1.2e-21 107.5 95 57.9
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 1.0e-20 104.4 85 63.5
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 5.7e-19 98.6 82 61.0
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 5.4e-17 92.0 88 58.0
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 2.7e-16 89.7 163 36.2
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 1.1e-12 77.8 63 65.1
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 3.1e-12 76.3 134 32.8
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 1.1e-09 67.8 76 46.1
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 5.4e-09 65.5 67 55.2
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 4.6e-08 62.4 62 58.1
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 8.6e-07 58.2 97 38.1
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 3.3e-06 56.2 69 43.5
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 4.3e-06 55.8 79 41.8


User provided reference genes

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