Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G5109 Papaver somniferum HOM05D005283 ORTHO05D006769 0.0e+00 1736.1 856 100.0
PSO170G5664 Papaver somniferum HOM05D005283 ORTHO05D006769 0.0e+00 1698.3 856 98.0
Nn3g21453 Nelumbo nucifera HOM05D005283 ORTHO05D006769 0.0e+00 1321.2 870 75.4
MBI18_g13696_MAGBIO Magnolia biondii HOM05D005283 ORTHO05D006769 0.0e+00 1298.1 866 75.6
TAR362G0604 Trochodendron aralioides HOM05D005283 ORTHO05D006769 0.0e+00 1280.4 912 71.6
Cfa015392 Carpinus fangiana HOM05D005283 ORTHO05D006769 0.0e+00 1251.5 881 72.3
QL06p009017 Quercus lobata HOM05D005283 ORTHO05D006769 0.0e+00 1251.5 850 73.6
CSS0043341 Camellia sinensis var. sinensis HOM05D005283 ORTHO05D006769 0.0e+00 1245.0 879 71.7
Dinv29746 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1243.8 871 72.4
MD13G1167900 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1243.8 876 71.8
Aqoxy2G02976 Aquilegia oxysepala HOM05D005283 ORTHO05D006769 0.0e+00 1241.9 884 71.2
MD08G1066800 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1237.2 876 71.2
Haze_01194 Corylus avellana HOM05D005283 ORTHO05D006769 0.0e+00 1234.9 886 71.1
Prupe.1G135400 Prunus persica HOM05D005283 ORTHO05D006769 0.0e+00 1232.6 867 71.9
Thecc.04G285400 Theobroma cacao HOM05D005283 ORTHO05D006769 0.0e+00 1226.8 884 70.7
RcHm_v2.0_Chr4g0422381 Rosa chinensis HOM05D005283 ORTHO05D006769 0.0e+00 1220.3 851 72.5
Ciclev10004285m.g Citrus clementina HOM05D005283 ORTHO05D006769 0.0e+00 1219.9 871 70.7
TWI09G0775 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1217.6 878 70.2
Dinv44377 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1207.2 831 73.6
Duzib151G1199 Durio zibethinus HOM05D005283 ORTHO05D006769 0.0e+00 1206.0 861 71.2
CANSAT78G0446 Cannabis sativa HOM05D005283 ORTHO05D006769 0.0e+00 1200.7 877 69.3
Potri.010G014000 Populus trichocarpa HOM05D005283 ORTHO05D006769 0.0e+00 1200.3 866 70.9
CsaV3_3G014700 Cucumis sativus L. HOM05D005283 ORTHO05D006769 0.0e+00 1199.9 860 69.8
TWI53G1858 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1199.9 878 69.9
FAN12G1245 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1196.0 866 70.2
FAN12G0573 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1194.9 866 70.2
ClCG05G006140 Citrullus lanatus HOM05D005283 ORTHO05D006769 0.0e+00 1191.8 860 69.8
vmacro08159 Vaccinium macrocarpon HOM05D005283 ORTHO05D006769 0.0e+00 1191.8 919 66.7
CiPaw.01G148000 Carya illinoinensis HOM05D005283 ORTHO05D006769 0.0e+00 1191.0 867 69.3
FvH4_4g18240 Fragaria vesca HOM05D005283 ORTHO05D006769 0.0e+00 1190.3 866 70.1
Hma1.2p1_1185F.1_g265090 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 0.0e+00 1170.2 870 70.2
DCAR_027073 Daucus carota HOM05D005283 ORTHO05D006769 0.0e+00 1164.4 853 68.8
Nitab4.5_0001120g0020 Nicotiana tabacum HOM05D005283 ORTHO05D006769 0.0e+00 1154.0 859 68.7
PGR031G1610 Punica granatum HOM05D005283 ORTHO05D006769 0.0e+00 1154.0 884 68.6
MELO3C006668.2 Cucumis melo HOM05D005283 ORTHO05D006769 0.0e+00 1152.1 885 66.4
Gohir.D02G054700 Gossypium hirsutum HOM05D005283 ORTHO05D006769 0.0e+00 1147.5 841 69.4
Lalb_Chr18g0051671 Lupinus albus HOM05D005283 ORTHO05D006769 0.0e+00 1147.1 871 66.9
Gorai.005G060600 Gossypium raimondii HOM05D005283 ORTHO05D006769 0.0e+00 1145.6 841 69.3
Sed0007600 Sechium edule HOM05D005283 ORTHO05D006769 0.0e+00 1144.0 873 67.1
CAN.G185.38 Capsicum annuum HOM05D005283 ORTHO05D006769 0.0e+00 1141.7 866 67.2
arahy.Tifrunner.gnm1.ann1.PZAP36 Arachis hypogaea HOM05D005283 ORTHO05D006769 0.0e+00 1138.6 889 66.7
Gohir.A02G049600 Gossypium hirsutum HOM05D005283 ORTHO05D006769 0.0e+00 1138.6 841 69.0
arahy.Tifrunner.gnm1.ann1.Z6JJZG Arachis hypogaea HOM05D005283 ORTHO05D006769 0.0e+00 1137.5 889 66.6
Sopen01g032430 Solanum pennellii HOM05D005283 ORTHO05D006769 0.0e+00 1130.9 855 67.5
Glyma.07G247100 Glycine max HOM05D005283 ORTHO05D006769 0.0e+00 1129.8 880 66.5
Solyc01g080620.3 Solanum lycopersicum HOM05D005283 ORTHO05D006769 0.0e+00 1127.9 855 67.6
Cc03_g01850 Coffea canephora HOM05D005283 ORTHO05D006769 0.0e+00 1126.3 855 67.5
Peaxi162Scf01123g00233 Petunia axillaris HOM05D005283 ORTHO05D006769 0.0e+00 1125.2 863 67.4
Glyma.17G026900 Glycine max HOM05D005283 ORTHO05D006769 0.0e+00 1120.5 880 65.8
ATR0796G268 Amborella trichopoda HOM05D005283 ORTHO05D006769 0.0e+00 1120.1 872 66.5
Atru.BG.90.p Acer truncatum HOM05D005283 ORTHO05D006769 0.0e+00 1115.9 836 67.9
Phvul.003G105900 Phaseolus vulgaris HOM05D005283 ORTHO05D006769 0.0e+00 1111.3 878 65.4
Rhsim04G0223000 Rhododendron simsii HOM05D005283 ORTHO05D006769 0.0e+00 1111.3 1004 59.9
Migut.G00154 Erythranthe guttata HOM05D005283 ORTHO05D006769 0.0e+00 1109.7 853 66.5
Psat4g027360 Pisum sativum HOM05D005283 ORTHO05D006769 0.0e+00 1108.6 875 65.7
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 0.0e+00 1101.3 879 64.7
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 0.0e+00 1094.7 870 66.3
HanXRQChr13g0411191 Helianthus annuus HOM05D005283 ORTHO05D006769 0.0e+00 1090.1 831 67.0
Sabra10G0008900 Salix brachista HOM05D005283 ORTHO05D006769 0.0e+00 1088.6 794 69.9
Medtr4g119960 Medicago truncatula HOM05D005283 ORTHO05D006769 0.0e+00 1087.4 871 66.0
Nitab4.5_0000059g0420 Nicotiana tabacum HOM05D005283 ORTHO05D006769 0.0e+00 1079.3 868 64.9
FAN17G2169 Fragaria x ananassa HOM05D005283 ORTHO05D006769 5.9e-312 1073.9 942 60.8
Eucgr.B01324 Eucalyptus grandis HOM05D005283 ORTHO05D006769 4.1e-311 1071.2 813 67.3
MSTRG.3910 Avicennia marina HOM05D005283 ORTHO05D006769 1.4e-308 1062.8 874 63.2
Manes.03G195900 Manihot esculenta HOM05D005283 ORTHO05D006769 4.1e-308 1061.2 818 66.7
AUR62041505 Chenopodium quinoa HOM05D005283 ORTHO05D006769 2.7e-307 1058.5 849 64.5
Sc25g0004780 Simmondsia chinensis HOM05D005283 ORTHO05D006769 1.3e-306 1056.2 861 64.1
Lj4g0026758 Lotus japonicus HOM05D005283 ORTHO05D006769 3.9e-306 1054.7 844 64.6
THA.LOC104820270 Tarenaya hassleriana HOM05D005283 ORTHO05D006769 3.9e-306 1054.7 848 64.2
TPR.G3193 Trifolium pratense HOM05D005283 ORTHO05D006769 3.3e-305 1051.6 946 60.5
EL10Ac3g06605 Beta vulgaris HOM05D005283 ORTHO05D006769 7.3e-305 1050.4 840 65.0
Lsat_1_v5_gn_5_54040 Lactuca sativa HOM05D005283 ORTHO05D006769 2.4e-303 1045.4 845 63.8
Ah.13g074630 Amaranthus hybridus HOM05D005283 ORTHO05D006769 1.6e-299 1032.7 854 64.2
Oeu029706.1 Olea europaea HOM05D005283 ORTHO05D000116 2.5e-297 1025.4 857 63.1
ECA240G0403 Erigeron canadensis HOM05D005283 ORTHO05D006769 8.1e-296 1020.4 828 63.8
CDE05G1280 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 2.0e-286 989.2 857 61.5
AL7G39450 Arabidopsis lyrata HOM05D005283 ORTHO05D006769 1.4e-284 983.0 831 60.8
Thhalv10024402m.g Eutrema salsugineum HOM05D005283 ORTHO05D006769 4.2e-284 981.5 843 60.6
AT4G15840 Arabidopsis thaliana HOM05D005283 ORTHO05D006769 1.6e-283 979.5 840 60.5
Carub.0007s2581 Capsella rubella HOM05D005283 ORTHO05D006769 3.5e-283 978.4 839 60.1
Sp7g14240 Schrenkiella parvula HOM05D005283 ORTHO05D006769 1.8e-282 976.1 845 60.0
SGA_v2.0_scaffold18G08298 Striga asiatica HOM05D005283 ORTHO05D006769 8.7e-282 973.8 866 59.8
CARHR290370 Cardamine hirsuta HOM05D005283 ORTHO05D006769 4.0e-279 964.9 863 59.3
C07p47430 Brassica napus HOM05D005283 ORTHO05D006769 1.3e-272 943.3 845 59.3
BolC7t45270H Brassica oleracea HOM05D005283 ORTHO05D006769 1.3e-272 943.3 845 59.3
BcaC06g32968 Brassica carinata HOM05D005283 ORTHO05D006769 1.4e-271 939.9 841 59.8
Os01g0932600 Oryza sativa ssp. japonica HOM05D005283 ORTHO05D006769 7.6e-270 934.1 843 59.7
BraA03t14037Z Brassica rapa HOM05D005283 ORTHO05D006769 1.7e-269 932.9 844 59.0
A03p49360 Brassica napus HOM05D005283 ORTHO05D006769 2.9e-269 932.2 844 59.5
CDE11G0961 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 4.2e-268 928.3 854 58.9
Zm00001eb142310 Zea mays HOM05D005283 ORTHO05D006769 4.1e-263 911.8 869 57.0
BcaC06g33444 Brassica carinata HOM05D005283 ORTHO05D006769 1.5e-262 909.8 845 58.0
Hund20553 Selenicereus undatus HOM05D005283 ORTHO05D006769 1.4e-260 903.3 761 62.3
Zm00001eb363540 Zea mays HOM05D005283 ORTHO05D006769 8.8e-242 840.9 776 58.2
HPP92_002145 Vanilla planifolia HOM05D005283 ORTHO05D006769 4.5e-230 802.0 723 60.9
Hma1.2p1_2906F.1_g330120 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 2.2e-229 799.7 774 58.8
COL.COLO4_13862 Corchorus olitorius HOM05D005283 ORTHO05D006769 2.5e-204 716.5 883 48.7
Pp3c5_16090 Physcomitrium patens HOM05D005283 ORTHO05D006769 6.2e-203 711.8 902 46.8
Pp3c6_10590 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.1e-196 691.0 914 44.5
GSVIVG01017732001 Vitis vinifera HOM05D005283 ORTHO05D006769 6.2e-195 685.3 527 69.1
Actinidia40275 Actinidia chinensis HOM05D005283 ORTHO05D006769 5.1e-181 639.0 399 79.9
Cpa.g.sc66.36 Carica papaya HOM05D005283 ORTHO05D006769 1.3e-173 614.4 615 54.3
Pp3c16_9230 Physcomitrium patens HOM05D005283 ORTHO05D006769 5.6e-172 609.0 856 41.9
Atru.chr4.2851 Acer truncatum HOM05D005283 ORTHO05D006769 4.5e-169 599.4 369 79.4
Lj6A677G73 Lonicera japonica HOM05D005283 ORTHO05D006769 6.7e-165 585.5 407 73.0
Actinidia40274 Actinidia chinensis HOM05D005283 ORTHO05D006769 3.4e-145 520.0 411 65.0
TAR633G1039 Trochodendron aralioides HOM05D005283 ORTHO05D006769 4.5e-145 519.6 391 69.6
Lj6C677T9 Lonicera japonica HOM05D005283 ORTHO05D006769 5.0e-144 516.2 478 60.5
AUR62042850 Chenopodium quinoa HOM05D005283 ORTHO05D006769 1.6e-121 441.4 498 52.4
TAR633G2729 Trochodendron aralioides HOM05D005283 ORTHO05D006769 1.0e-117 428.7 274 77.0
SEGI_38162 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 5.4e-98 363.2 546 42.7
SEGI_40593 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 5.4e-98 363.2 546 42.7
unitig_748.g8731 Utricularia gibba HOM05D005283 ORTHO05D006769 2.7e-97 360.9 352 53.4
unitig_748.g8730 Utricularia gibba HOM05D005283 ORTHO05D006769 8.9e-85 319.3 281 59.4
GSVIVG01017731001 Vitis vinifera HOM05D005283 ORTHO05D006769 1.4e-82 312.0 175 85.7
Pp3c20_17000 Physcomitrium patens HOM05D005283 ORTHO05D006769 5.1e-80 303.5 371 49.9
PRCOL_00005501 Prasinoderma coloniale HOM05D005283 ORTHO05D006769 2.0e-76 291.6 871 30.1
TAR633G1238 Trochodendron aralioides HOM05D005283 ORTHO05D006769 2.6e-76 291.2 151 91.4
Actinidia26773 Actinidia chinensis HOM05D005283 ORTHO05D006769 1.7e-72 278.5 283 56.2
HPP92_002144 Vanilla planifolia HOM05D005283 ORTHO05D006769 7.8e-65 253.1 137 88.3
FAN07G0879 Fragaria x ananassa HOM05D005283 ORTHO05D006769 3.3e-63 247.7 145 84.1
SEGI_08317 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 2.4e-58 231.5 137 79.6
SEGI_24032 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.3e-51 209.1 117 76.9
SEGI_35628 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.8e-48 198.7 260 41.5
Mapoly0037s0064 Marchantia polymorpha HOM05D005283 ORTHO05D006769 6.2e-46 190.3 289 36.3
AUR62006322 Chenopodium quinoa HOM05D007078 ORTHO05D008745 1.5e-36 159.1 186 52.2
MCO04G464 Micromonas commoda HOM05D005283 ORTHO05D006769 3.4e-28 131.3 208 36.1
BolC4t27184H Brassica oleracea HOM05D005283 ORTHO05D006769 1.1e-23 116.3 129 48.1
Cpa.g.sc66.37 Carica papaya HOM05D005283 ORTHO05D006769 1.7e-22 112.5 85 69.4
A04p20740 Brassica napus HOM05D005283 ORTHO05D006769 2.8e-22 111.7 162 41.4
Cfa001632 Carpinus fangiana HOM05D005283 ORTHO05D006769 7.2e-18 97.1 257 28.4
BcaC05g28381 Brassica carinata HOM05D005283 ORTHO05D021637 2.0e-15 89.0 55 69.1
C04p56580 Brassica napus HOM05D005283 ORTHO05D006769 1.7e-14 85.9 129 39.5
AUR62038887 Chenopodium quinoa HOM05D002461 ORTHO05D000898 4.8e-14 84.3 58 70.7
AUR62005650 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.3e-13 80.9 55 70.9
AUR62010442 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.3e-13 80.9 55 70.9
AUR62011828 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.3e-13 80.9 55 70.9
AUR62024534 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.3e-13 80.9 55 70.9
AUR62024696 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.3e-13 80.9 55 70.9
AUR62029074 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.3e-13 80.9 55 70.9
AUR62031767 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.3e-13 80.9 55 70.9
AUR62033912 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.3e-13 80.9 55 70.9
AUR62035885 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.3e-13 80.9 55 70.9
AUR62035966 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.3e-13 80.9 55 70.9
AUR62002595 Chenopodium quinoa HOM05D002461 ORTHO05D000898 7.0e-13 80.5 55 70.9
HanXRQChr14g0449221 Helianthus annuus HOM05D005283 ORTHO05D006769 3.5e-12 78.2 58 65.5
BcaC02g08264 Brassica carinata HOM05D005283 ORTHO05D006769 5.9e-12 77.4 118 39.8
HanXRQChr12g0372601 Helianthus annuus HOM05D005283 ORTHO05D006769 2.2e-11 75.5 55 67.3
Cpa.g.c37401 Carica papaya HOM05D005283 ORTHO05D006769 1.1e-10 73.2 33 93.9
A05p26530 Brassica napus HOM05D005283 ORTHO05D021637 9.7e-07 60.1 90 37.8


User provided reference genes

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