Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G4985 Papaver somniferum HOM05D006794 ORTHO05D008322 2.4e-122 442.2 225 100.0
PSO832G1236 Papaver somniferum HOM05D006794 ORTHO05D008322 9.8e-116 420.2 225 95.6
CiPaw.15G144200 Carya illinoinensis HOM05D006794 ORTHO05D008322 7.6e-44 181.4 216 51.9
Thecc.03G058000 Theobroma cacao HOM05D006794 ORTHO05D008322 5.5e-42 175.3 216 50.5
GSVIVG01008463001 Vitis vinifera HOM05D006794 ORTHO05D008322 9.3e-42 174.5 217 51.2
CiPaw.16G095900 Carya illinoinensis HOM05D006794 ORTHO05D008322 3.9e-40 169.1 217 49.3
Gorai.008G290400 Gossypium raimondii HOM05D006794 ORTHO05D008322 5.1e-40 168.7 217 49.8
QL10p030576 Quercus lobata HOM05D006794 ORTHO05D008322 1.1e-39 167.5 218 50.5
Duzib068G0617 Durio zibethinus HOM05D006794 ORTHO05D008322 1.9e-39 166.8 215 48.4
TAR622G0128 Trochodendron aralioides HOM05D006794 ORTHO05D008322 9.6e-39 164.5 214 49.5
Duzib084G0148 Durio zibethinus HOM05D006794 ORTHO05D008322 1.3e-38 164.1 217 48.4
Nn4g24277 Nelumbo nucifera HOM05D006794 ORTHO05D008322 2.4e-37 159.8 233 46.8
Lalb_Chr16g0386961 Lupinus albus HOM05D006794 ORTHO05D008322 2.6e-36 156.4 213 48.4
Cfa021396 Carpinus fangiana HOM05D006794 ORTHO05D008322 7.6e-36 154.8 215 46.0
ClCG04G010570 Citrullus lanatus HOM05D006794 ORTHO05D008322 1.0e-35 154.5 215 46.5
arahy.Tifrunner.gnm1.ann1.KQ26AL Arachis hypogaea HOM05D006794 ORTHO05D008322 3.8e-35 152.5 217 49.3
arahy.Tifrunner.gnm1.ann1.P2R0G6 Arachis hypogaea HOM05D006794 ORTHO05D008322 3.8e-35 152.5 217 49.3
Atru.chr9.1672 Acer truncatum HOM05D006794 ORTHO05D008322 6.5e-35 151.8 215 46.5
MBI19_g22477_MAGBIO Magnolia biondii HOM05D006794 ORTHO05D008322 8.4e-35 151.4 205 46.8
Phvul.004G150000 Phaseolus vulgaris HOM05D006794 ORTHO05D008322 8.4e-35 151.4 214 48.6
VMungo0464G2014 Vigna mungo HOM05D006794 ORTHO05D008322 8.4e-35 151.4 214 48.6
Glyma.09G174700 Glycine max HOM05D006794 ORTHO05D008322 1.4e-34 150.6 214 47.7
Dinv08202 Davidia involucrata HOM05D006794 ORTHO05D008322 7.2e-34 148.3 218 46.8
FAN13G2800 Fragaria x ananassa HOM05D006794 ORTHO05D008322 9.3e-34 147.9 213 46.0
Hma1.2p1_0163F.1_g073020 Hydrangea macrophylla HOM05D006794 ORTHO05D008322 4.6e-33 145.6 214 46.3
TPR.G8635 Trifolium pratense HOM05D006794 ORTHO05D008322 4.6e-33 145.6 216 46.8
TWI81G0550 Tripterygium wilfordii HOM05D006794 ORTHO05D008322 7.9e-33 144.8 219 44.3
Cc04_g06140 Coffea canephora HOM05D006794 ORTHO05D008322 1.0e-32 144.4 222 45.9
BcaC09g48759 Brassica carinata HOM05D006794 ORTHO05D008322 1.3e-32 144.1 235 44.7
C01p46200 Brassica napus HOM05D006794 ORTHO05D008322 1.3e-32 144.1 235 44.7
BolC1t04582H Brassica oleracea HOM05D006794 ORTHO05D008322 1.3e-32 144.1 235 44.7
Psat4g000080 Pisum sativum HOM05D006794 ORTHO05D008322 8.7e-32 141.4 216 44.4
Lj2g0023485 Lotus japonicus HOM05D006794 ORTHO05D008322 1.9e-31 140.2 216 46.3
Medtr6g069830 Medicago truncatula HOM05D006794 ORTHO05D008322 3.3e-31 139.4 215 45.6
Lalb_Chr22g0353521 Lupinus albus HOM05D006794 ORTHO05D008322 4.3e-31 139.0 218 45.9
CSS0048798 Camellia sinensis var. sinensis HOM05D006794 ORTHO05D008322 5.7e-31 138.7 216 44.9
Sp3g16080 Schrenkiella parvula HOM05D006794 ORTHO05D008322 5.7e-31 138.7 227 43.2
Migut.D01320 Erythranthe guttata HOM05D006794 ORTHO05D008322 7.4e-31 138.3 205 44.9
CANSAT80G2635 Cannabis sativa HOM05D006794 ORTHO05D008322 9.7e-31 137.9 220 44.1
Glyma.08G055100 Glycine max HOM05D006794 ORTHO05D008322 1.3e-30 137.5 216 44.4
CANSAT80G0659 Cannabis sativa HOM05D006794 ORTHO05D008322 2.2e-30 136.7 220 44.5
Lsat_1_v5_gn_5_175480 Lactuca sativa HOM05D006794 ORTHO05D008322 2.2e-30 136.7 224 45.5
Manes.06G005000 Manihot esculenta HOM05D006794 ORTHO05D008322 2.2e-30 136.7 220 45.5
Phvul.002G330800 Phaseolus vulgaris HOM05D006794 ORTHO05D008322 2.2e-30 136.7 217 43.8
Cpa.g.sc3.383 Carica papaya HOM05D006794 ORTHO05D008322 4.8e-30 135.6 212 44.3
arahy.Tifrunner.gnm1.ann1.PNUX28 Arachis hypogaea HOM05D006794 ORTHO05D008322 6.3e-30 135.2 216 44.9
arahy.Tifrunner.gnm1.ann1.AT27RE Arachis hypogaea HOM05D006794 ORTHO05D008322 8.2e-30 134.8 216 44.9
RcHm_v2.0_Chr7g0178231 Rosa chinensis HOM05D006794 ORTHO05D008322 8.2e-30 134.8 214 44.9
Sed0024550 Sechium edule HOM05D006794 ORTHO05D008322 1.8e-29 133.7 218 43.6
Sed0017400 Sechium edule HOM05D000034 ORTHO05D000037 2.4e-29 133.3 215 41.4
VMungo0251G1205 Vigna mungo HOM05D006794 ORTHO05D008322 4.1e-29 132.5 216 44.0
Sabra15G0031400 Salix brachista HOM05D006794 ORTHO05D008322 6.9e-29 131.7 220 43.2
THA.LOC104825595 Tarenaya hassleriana HOM05D006794 ORTHO05D008322 6.9e-29 131.7 218 42.7
Sopen03g037580 Solanum pennellii HOM05D006794 ORTHO05D008322 9.0e-29 131.3 216 44.9
MD14G1237200 Malus domestica HOM05D006794 ORTHO05D008322 1.5e-28 130.6 219 43.4
FvH4_5g17460 Fragaria vesca HOM05D006794 ORTHO05D008322 2.0e-28 130.2 213 44.1
FAN18G3906 Fragaria x ananassa HOM05D006794 ORTHO05D008322 2.0e-28 130.2 213 44.1
MD06G1228000 Malus domestica HOM05D006794 ORTHO05D008322 2.0e-28 130.2 216 44.0
MD01G1007300 Malus domestica HOM05D006794 ORTHO05D008322 3.4e-28 129.4 207 42.0
Oeu046160.1 Olea europaea HOM05D006794 ORTHO05D008322 5.9e-28 128.6 208 43.3
Prupe.5G234500 Prunus persica HOM05D006794 ORTHO05D008322 5.9e-28 128.6 217 42.4
Solyc03g118630.3 Solanum lycopersicum HOM05D006794 ORTHO05D008322 1.0e-27 127.9 216 44.4
BcaC01g03720 Brassica carinata HOM05D006794 ORTHO05D008322 1.7e-27 127.1 212 43.9
Nitab4.5_0001264g0020 Nicotiana tabacum HOM05D006794 ORTHO05D008322 1.7e-27 127.1 220 43.2
PGSC0003DMG400005675 Solanum tuberosum HOM05D006794 ORTHO05D008322 2.9e-27 126.3 217 43.8
C03p49310 Brassica napus HOM05D006794 ORTHO05D008322 8.5e-27 124.8 212 43.9
A03p40470 Brassica napus HOM05D006794 ORTHO05D008322 1.4e-26 124.0 222 42.3
Potri.015G036900 Populus trichocarpa HOM05D006794 ORTHO05D008322 2.5e-26 123.2 223 42.6
Eucgr.B00988 Eucalyptus grandis HOM05D006794 ORTHO05D008322 1.2e-25 120.9 217 40.6
FAN08G0189 Fragaria x ananassa HOM05D006794 ORTHO05D008322 1.2e-25 120.9 212 42.0
HanXRQChr01g0012541 Helianthus annuus HOM05D006794 ORTHO05D008322 1.6e-25 120.6 217 39.6
Potri.012G045700 Populus trichocarpa HOM05D006794 ORTHO05D008322 1.6e-25 120.6 215 41.4
PGR083G0475 Punica granatum HOM05D006794 ORTHO05D008322 1.6e-25 120.6 214 42.5
FAN04G0930 Fragaria x ananassa HOM05D006794 ORTHO05D008322 3.6e-25 119.4 212 41.5
DCAR_013026 Daucus carota HOM05D006794 ORTHO05D008322 1.4e-24 117.5 212 43.9
BcaB04g18974 Brassica carinata HOM05D006794 ORTHO05D008322 2.3e-24 116.7 220 39.5
Thhalv10021515m.g Eutrema salsugineum HOM05D006794 ORTHO05D008322 2.3e-24 116.7 215 40.9
BraA01t03709Z Brassica rapa HOM05D006794 ORTHO05D008322 5.1e-24 115.5 229 41.0
BcaB04g20803 Brassica carinata HOM05D006794 ORTHO05D008322 2.5e-23 113.2 234 39.7
Carub.0003s1768 Capsella rubella HOM05D006794 ORTHO05D008322 2.5e-23 113.2 214 40.2
AL3G31120 Arabidopsis lyrata HOM05D006794 ORTHO05D008322 4.3e-23 112.5 232 39.7
Lj4g0014763 Lotus japonicus HOM05D006794 ORTHO05D008322 4.8e-22 109.0 216 37.5
HPP92_008000 Vanilla planifolia HOM05D006794 ORTHO05D008322 1.4e-21 107.5 202 41.6
Gohir.A12G269600 Gossypium hirsutum HOM05D006794 ORTHO05D008322 1.8e-21 107.1 173 41.6
A01p36460 Brassica napus HOM05D006794 ORTHO05D008322 2.4e-21 106.7 234 40.6
ECA248G0187 Erigeron canadensis HOM05D006794 ORTHO05D008322 6.9e-21 105.1 219 39.3
Gohir.D12G270100 Gossypium hirsutum HOM05D006794 ORTHO05D008322 2.6e-20 103.2 173 41.0
COL.COLO4_04996 Corchorus olitorius HOM05D006794 ORTHO05D008322 1.7e-19 100.5 110 52.7
Aa31LG8G4820 Aethionema arabicum HOM05D006794 ORTHO05D008322 5.0e-19 99.0 204 36.8
CDE05G2986 Ceratophyllum demersum HOM05D006794 ORTHO05D008322 1.1e-18 97.8 168 42.3
MELO3C002138.2 Cucumis melo HOM05D006794 ORTHO05D008322 1.4e-18 97.4 113 49.6
Rhsim12G0138200 Rhododendron simsii HOM05D006919 ORTHO05D008705 1.9e-18 97.1 188 41.0
Haze_18880 Corylus avellana HOM05D006794 ORTHO05D008322 9.4e-18 94.7 114 47.4
CANSAT64G0030 Cannabis sativa HOM05D006794 ORTHO05D008322 2.7e-17 93.2 173 39.9
Ca_17183_v3 Cicer arietinum L. HOM05D006794 ORTHO05D008322 4.7e-17 92.4 117 48.7
Glyma.07G103100 Glycine max HOM05D006794 ORTHO05D008322 8.8e-16 88.2 108 51.9
Ca_25344_v3 Cicer arietinum L. HOM05D006794 ORTHO05D008322 3.3e-15 86.3 172 39.5
CARHR093280 Cardamine hirsuta HOM05D006794 ORTHO05D008322 4.4e-15 85.9 199 36.2
Nn2g15270 Nelumbo nucifera HOM05D006794 ORTHO05D008322 5.7e-15 85.5 127 45.7
Psat1g031080 Pisum sativum HOM05D006794 ORTHO05D008322 5.7e-15 85.5 172 40.1
vmacro16409 Vaccinium macrocarpon HOM05D006794 ORTHO05D008322 4.8e-14 82.4 194 35.6
AT3G17950 Arabidopsis thaliana HOM05D006794 ORTHO05D008322 8.2e-14 81.6 102 48.0
Nitab4.5_0010223g0030 Nicotiana tabacum HOM05D006794 ORTHO05D008322 1.2e-12 77.8 221 34.8
Sabra12G0031800 Salix brachista HOM05D006794 ORTHO05D008322 2.2e-11 73.6 108 45.4
SEGI_38129 Sequoiadendron giganteum HOM05D003527 ORTHO05D004099 2.9e-11 73.2 188 30.9
C05p26280 Brassica napus HOM05D006794 ORTHO05D008322 3.8e-11 72.8 102 48.0
SalBow1G0629 Salvia bowleyana HOM05D006794 ORTHO05D008322 8.5e-11 71.6 196 35.2
Prupe.6G079000 Prunus persica HOM05D003527 ORTHO05D004099 1.1e-10 71.2 209 32.5
SGA_v2.0_scaffold172G39018 Striga asiatica HOM05D006794 ORTHO05D008322 5.5e-10 68.9 161 34.8
MD11G1110500 Malus domestica HOM05D003527 ORTHO05D004099 7.2e-10 68.6 196 32.1
Manes.04G034300 Manihot esculenta HOM05D003527 ORTHO05D004099 9.4e-10 68.2 208 33.2
Cpa.g.sc81.162 Carica papaya HOM05D003527 ORTHO05D004099 4.7e-09 65.9 207 32.4
Peaxi162Scf00314g00315 Petunia axillaris HOM05D006794 ORTHO05D008322 4.7e-09 65.9 111 43.2
CiPaw.13G095400 Carya illinoinensis HOM05D003527 ORTHO05D004099 8.0e-09 65.1 181 35.9
Oeu004474.1 Olea europaea HOM05D006794 ORTHO05D008322 1.0e-08 64.7 79 49.4
MD03G1096000 Malus domestica HOM05D003527 ORTHO05D004099 1.4e-08 64.3 196 30.6
Ciclev10009814m.g Citrus clementina HOM05D006794 ORTHO05D008322 2.3e-08 63.5 145 34.5
CDE07G1050 Ceratophyllum demersum HOM05D006794 ORTHO05D008322 6.7e-08 62.0 43 79.1
Actinidia23946 Actinidia chinensis HOM05D003527 ORTHO05D004099 8.8e-08 61.6 206 34.0
Gohir.D05G096200 Gossypium hirsutum HOM05D003527 ORTHO05D004099 8.8e-08 61.6 196 32.1
Gorai.009G099700 Gossypium raimondii HOM05D003527 ORTHO05D004099 8.8e-08 61.6 196 32.1
HanXRQChr05g0134511 Helianthus annuus HOM05D003527 ORTHO05D004099 8.8e-08 61.6 177 33.9
Nn2g10383 Nelumbo nucifera HOM05D003527 ORTHO05D004099 1.1e-07 61.2 177 35.6
Dinv12411 Davidia involucrata HOM05D003527 ORTHO05D004099 1.5e-07 60.8 196 32.1
Eucgr.J02057 Eucalyptus grandis HOM05D003527 ORTHO05D004099 1.5e-07 60.8 177 32.8
Os02g0733400 Oryza sativa ssp. japonica HOM05D006794 ORTHO05D008322 1.5e-07 60.8 211 28.0
Os06g0256800 Oryza sativa ssp. japonica HOM05D006794 ORTHO05D008322 1.5e-07 60.8 208 28.8
PSO384G3887 Papaver somniferum HOM05D003527 ORTHO05D004099 1.5e-07 60.8 170 32.9
Ciclev10029234m.g Citrus clementina HOM05D003527 ORTHO05D004099 2.0e-07 60.5 183 31.7
Sc12g0001550 Simmondsia chinensis HOM05D003527 ORTHO05D004099 2.0e-07 60.5 199 32.2
Zm00001eb190230 Zea mays HOM05D006794 ORTHO05D008322 2.0e-07 60.5 215 29.8
FAN25G2547 Fragaria x ananassa HOM05D003527 ORTHO05D004099 2.6e-07 60.1 198 31.8
Lsat_1_v5_gn_8_75920 Lactuca sativa HOM05D003527 ORTHO05D004099 3.3e-07 59.7 184 33.7
QL01p032299 Quercus lobata HOM05D003527 ORTHO05D004099 3.3e-07 59.7 176 31.8
Haze_24084 Corylus avellana HOM05D003527 ORTHO05D004099 4.4e-07 59.3 177 32.8
DCAR_005975 Daucus carota HOM05D003527 ORTHO05D004099 4.4e-07 59.3 208 31.7
FAN16G0579 Fragaria x ananassa HOM05D003527 ORTHO05D004099 4.4e-07 59.3 201 31.3
Ah.08g219410 Amaranthus hybridus HOM05D003527 ORTHO05D004099 5.7e-07 58.9 202 31.2
ClCG02G020230 Citrullus lanatus HOM05D003527 ORTHO05D004099 5.7e-07 58.9 184 33.2
MELO3C025924.2 Cucumis melo HOM05D003527 ORTHO05D004099 5.7e-07 58.9 185 31.9
TAR633G1470 Trochodendron aralioides HOM05D003527 ORTHO05D004099 5.7e-07 58.9 177 33.9
TAR636G1653 Trochodendron aralioides HOM05D003527 ORTHO05D004099 7.5e-07 58.5 168 33.3
Thecc.09G322900 Theobroma cacao HOM05D003527 ORTHO05D004099 9.7e-07 58.2 208 31.2
AUR62001798 Chenopodium quinoa HOM05D003527 ORTHO05D004099 1.3e-06 57.8 172 32.6
CsaV3_6G016930 Cucumis sativus L. HOM05D003527 ORTHO05D004099 1.3e-06 57.8 185 31.9
PSO339G4025 Papaver somniferum HOM05D003527 ORTHO05D004099 1.3e-06 57.8 118 38.1
Aqoxy2G02103 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 1.7e-06 57.4 202 33.7
AUR62009585 Chenopodium quinoa HOM05D003527 ORTHO05D004099 1.7e-06 57.4 182 31.9
Potri.001G238900 Populus trichocarpa HOM05D003527 ORTHO05D004099 1.7e-06 57.4 206 31.1
Sabra09G0021000 Salix brachista HOM05D003527 ORTHO05D004099 1.7e-06 57.4 208 31.7
Manes.11G131300 Manihot esculenta HOM05D003527 ORTHO05D004099 2.2e-06 57.0 167 32.9
Gohir.A05G096000 Gossypium hirsutum HOM05D003527 ORTHO05D004099 2.8e-06 56.6 198 31.8
MBI05_g30238_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 2.8e-06 56.6 170 32.4
Medtr2g096780 Medicago truncatula HOM05D003527 ORTHO05D004099 2.8e-06 56.6 169 32.0
Nitab4.5_0001800g0180 Nicotiana tabacum HOM05D003527 ORTHO05D004099 2.8e-06 56.6 193 32.1
RcHm_v2.0_Chr5g0064221 Rosa chinensis HOM05D003527 ORTHO05D004099 2.8e-06 56.6 197 30.5
COL.COLO4_18499 Corchorus olitorius HOM05D003527 ORTHO05D004099 3.7e-06 56.2 54 55.6
TPR.G34322 Trifolium pratense HOM05D003527 ORTHO05D004099 3.7e-06 56.2 175 31.4
EL10Ac7g16007 Beta vulgaris HOM05D003527 ORTHO05D004099 4.8e-06 55.8 169 33.1
FAN21G2526 Fragaria x ananassa HOM05D003527 ORTHO05D004099 4.8e-06 55.8 201 30.8
Oeu024354.1 Olea europaea HOM05D003527 ORTHO05D004099 4.8e-06 55.8 177 32.2
Sed0026502 Sechium edule HOM05D003527 ORTHO05D004099 4.8e-06 55.8 184 31.5
Lsat_1_v5_gn_9_23221 Lactuca sativa HOM05D003527 ORTHO05D004099 6.3e-06 55.5 181 33.7
Haze_13383 Corylus avellana HOM05D006794 ORTHO05D008322 8.2e-06 55.1 91 41.8
Duzib168G1608 Durio zibethinus HOM05D003527 ORTHO05D004099 8.2e-06 55.1 171 32.2
PSO151G0026 Papaver somniferum HOM05D003527 ORTHO05D004099 8.2e-06 55.1 127 37.8
GSVIVG01024982001 Vitis vinifera HOM05D003527 ORTHO05D004099 8.2e-06 55.1 189 31.7


User provided reference genes

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