Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 3.1e-59 231.5 108 100.0
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 6.9e-59 230.3 108 99.1
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 2.7e-47 191.8 108 81.5
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 7.9e-47 190.3 108 80.6
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 3.3e-45 184.9 108 79.6
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 1.1e-43 179.9 104 77.9
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 2.4e-43 178.7 108 75.0
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 5.3e-43 177.6 104 76.9
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 1.5e-42 176.0 106 75.5
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 2.6e-42 175.3 106 75.5
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 3.4e-42 174.9 104 78.8
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 3.4e-42 174.9 104 75.0
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 4.5e-42 174.5 106 75.5
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 2.2e-41 172.2 104 76.9
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 2.2e-41 172.2 104 75.0
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 2.2e-41 172.2 100 78.0
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 2.9e-41 171.8 101 77.2
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 2.9e-41 171.8 104 75.0
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 3.8e-41 171.4 108 74.1
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 3.8e-41 171.4 104 76.0
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 3.8e-41 171.4 100 78.0
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 4.9e-41 171.0 106 74.5
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 4.9e-41 171.0 104 75.0
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 4.9e-41 171.0 103 76.7
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 6.5e-41 170.6 104 76.0
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 8.4e-41 170.2 103 76.7
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 8.4e-41 170.2 104 75.0
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.1e-40 169.9 105 71.4
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 1.1e-40 169.9 104 73.1
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 1.1e-40 169.9 104 75.0
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 1.1e-40 169.9 104 74.0
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 1.4e-40 169.5 104 76.0
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 1.4e-40 169.5 108 71.3
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 1.4e-40 169.5 104 74.0
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 1.9e-40 169.1 104 74.0
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 1.9e-40 169.1 100 76.0
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 2.5e-40 168.7 104 73.1
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 2.5e-40 168.7 103 75.7
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 2.5e-40 168.7 104 74.0
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 3.2e-40 168.3 104 73.1
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 3.2e-40 168.3 104 74.0
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 3.2e-40 168.3 103 75.7
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 5.5e-40 167.5 104 74.0
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 5.5e-40 167.5 99 77.8
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 7.1e-40 167.2 104 75.0
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 1.2e-39 166.4 103 73.8
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 1.6e-39 166.0 95 77.9
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.6e-39 166.0 104 73.1
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 1.6e-39 166.0 99 76.8
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 1.6e-39 166.0 101 75.2
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 2.1e-39 165.6 106 68.9
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 2.1e-39 165.6 104 74.0
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 2.1e-39 165.6 99 74.7
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 2.7e-39 165.2 103 75.7
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 2.7e-39 165.2 106 71.7
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 2.7e-39 165.2 100 76.0
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 2.7e-39 165.2 100 76.0
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 2.7e-39 165.2 104 72.1
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 3.5e-39 164.9 104 72.1
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 3.5e-39 164.9 104 72.1
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 3.5e-39 164.9 101 76.2
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 4.6e-39 164.5 100 74.0
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 4.6e-39 164.5 104 72.1
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 6.0e-39 164.1 103 71.8
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 6.0e-39 164.1 103 72.8
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 6.0e-39 164.1 104 72.1
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 6.0e-39 164.1 105 69.5
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 6.0e-39 164.1 105 69.5
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 6.0e-39 164.1 100 75.0
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 7.9e-39 163.7 95 77.9
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 7.9e-39 163.7 106 68.9
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 7.9e-39 163.7 104 71.2
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 7.9e-39 163.7 104 71.2
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 7.9e-39 163.7 104 71.2
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 7.9e-39 163.7 104 72.1
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 1.0e-38 163.3 100 76.0
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 1.0e-38 163.3 100 76.0
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 1.0e-38 163.3 100 75.0
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 1.3e-38 162.9 104 73.1
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 1.3e-38 162.9 100 76.0
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 1.3e-38 162.9 103 70.9
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 1.3e-38 162.9 105 69.5
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 1.3e-38 162.9 105 69.5
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 1.3e-38 162.9 100 76.0
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 1.3e-38 162.9 104 69.2
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 1.3e-38 162.9 104 69.2
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 1.8e-38 162.5 106 72.6
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 2.3e-38 162.2 95 77.9
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 2.3e-38 162.2 95 75.8
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 3.9e-38 161.4 100 75.0
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 3.9e-38 161.4 104 69.2
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 3.9e-38 161.4 105 71.4
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 5.1e-38 161.0 104 72.1
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 5.1e-38 161.0 104 72.1
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 5.1e-38 161.0 104 72.1
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 5.1e-38 161.0 105 68.6
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 5.1e-38 161.0 105 68.6
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 6.7e-38 160.6 104 72.1
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 6.7e-38 160.6 101 70.3
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 6.7e-38 160.6 103 70.9
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 1.1e-37 159.8 104 71.2
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 1.1e-37 159.8 104 71.2
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 1.1e-37 159.8 104 71.2
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 1.1e-37 159.8 104 71.2
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 1.1e-37 159.8 104 71.2
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 1.1e-37 159.8 104 71.2
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 1.1e-37 159.8 104 71.2
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 1.1e-37 159.8 104 71.2
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 1.1e-37 159.8 104 71.2
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 1.1e-37 159.8 104 71.2
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 1.1e-37 159.8 104 71.2
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 1.1e-37 159.8 104 71.2
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 1.1e-37 159.8 104 71.2
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 1.1e-37 159.8 103 68.9
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 1.1e-37 159.8 103 70.9
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 1.9e-37 159.1 104 71.2
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 3.3e-37 158.3 104 70.2
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 3.3e-37 158.3 104 69.2
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 3.3e-37 158.3 104 69.2
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 3.3e-37 158.3 94 77.7
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 3.3e-37 158.3 90 78.9
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 4.3e-37 157.9 104 69.2
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 7.4e-37 157.1 104 68.3
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 9.7e-37 156.8 103 66.0
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 9.7e-37 156.8 104 68.3
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 1.3e-36 156.4 106 64.2
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 1.6e-36 156.0 95 73.7
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 2.2e-36 155.6 104 67.3
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 3.7e-36 154.8 103 68.0
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 8.2e-36 153.7 102 70.6
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 8.2e-36 153.7 102 70.6
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 1.1e-35 153.3 88 76.1
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 1.1e-35 153.3 99 68.7
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.4e-35 152.9 104 65.4
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.8e-35 152.5 104 65.4
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.8e-35 152.5 104 66.3
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 1.8e-35 152.5 104 66.3
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 2.4e-35 152.1 104 64.4
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 3.1e-35 151.8 104 67.3
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 4.1e-35 151.4 104 64.4
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 5.3e-35 151.0 104 64.4
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 6.9e-35 150.6 96 67.7
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.5e-34 149.4 104 65.4
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 2.0e-34 149.1 104 64.4
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 2.9e-33 145.2 163 47.9
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 8.5e-33 143.7 104 61.5
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 2.5e-29 132.1 94 62.8
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 1.3e-28 129.8 94 59.6
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 2.2e-28 129.0 93 62.4
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 2.2e-28 129.0 96 59.4
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 4.8e-28 127.9 82 72.0
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 1.4e-27 126.3 73 71.2
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 3.1e-27 125.2 96 57.3
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 4.1e-27 124.8 70 74.3
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 2.6e-26 122.1 82 69.5
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 8.5e-25 117.1 63 77.8
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.4e-24 116.3 80 67.5
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 4.7e-23 111.3 94 46.8
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 3.3e-21 105.1 71 69.0
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 1.4e-19 99.8 91 48.4
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 3.4e-18 95.1 73 61.6
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 1.7e-17 92.8 67 64.2
Ca_23836_v3 Cicer arietinum L. HOM05D004069 ORTHO05D004699 2.9e-17 92.0 63 69.8
PRCOL_00002240 Prasinoderma coloniale HOM05D004069 ORTHO05D004699 2.9e-17 92.0 90 45.6
MBI18_g15803_MAGBIO Magnolia biondii HOM05D004069 ORTHO05D004699 3.8e-17 91.7 49 79.6
MELO3C035505.2 Cucumis melo HOM05D004069 ORTHO05D004699 6.5e-17 90.9 63 66.7
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 1.9e-16 89.4 69 60.9
AUR62031965 Chenopodium quinoa HOM05D004069 ORTHO05D004699 7.2e-16 87.4 54 74.1
Solyc08g007805.1 Solanum lycopersicum HOM05D004069 ORTHO05D004699 7.2e-16 87.4 54 74.1
CANSAT54G1967 Cannabis sativa HOM05D004069 ORTHO05D004699 4.7e-15 84.7 59 69.5
Ah.01g017180 Amaranthus hybridus HOM05D004069 ORTHO05D004699 1.8e-14 82.8 52 67.3
HanXRQChr05g0152631 Helianthus annuus HOM05D001685 ORTHO05D007488 3.9e-14 81.6 60 65.0
Lsat_1_v5_gn_5_162901 Lactuca sativa HOM05D004069 ORTHO05D004699 3.9e-14 81.6 63 61.9
SGA_v2.0_scaffold122G33247 Striga asiatica HOM05D002362 ORTHO05D002465 2.0e-13 79.3 55 65.5
Ah.01g017190 Amaranthus hybridus HOM05D004069 ORTHO05D004699 9.7e-13 77.0 51 72.5
VMungo0720G1128 Vigna mungo HOM05D004069 ORTHO05D004699 5.3e-11 71.2 65 55.4
VMungo0251G3681 Vigna mungo HOM05D039118 ORTHO05D004699 1.2e-10 70.1 45 68.9


User provided reference genes

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