Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G4375 Papaver somniferum HOM05D001069 ORTHO05D007586 4.6e-62 241.1 128 100.0
PSO832G3124 Papaver somniferum HOM05D001069 ORTHO05D007586 1.8e-61 239.2 128 99.2
CSS0013670 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 4.3e-52 208.0 126 85.7
CSS0018717 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 4.3e-52 208.0 126 85.7
Manes.08G135700 Manihot esculenta HOM05D001069 ORTHO05D007586 9.6e-52 206.8 126 84.9
TAR636G2667 Trochodendron aralioides HOM05D001069 ORTHO05D001549 9.6e-52 206.8 126 84.9
Nn1g02583 Nelumbo nucifera HOM05D001069 ORTHO05D007586 1.3e-51 206.5 126 84.9
Actinidia32808 Actinidia chinensis HOM05D001069 ORTHO05D007586 1.6e-51 206.1 126 85.7
QL03p027238 Quercus lobata HOM05D001069 ORTHO05D007586 1.6e-51 206.1 125 84.8
Manes.09G151800 Manihot esculenta HOM05D001069 ORTHO05D007586 2.1e-51 205.7 126 84.1
Thecc.05G281200 Theobroma cacao HOM05D001069 ORTHO05D007586 2.8e-51 205.3 128 83.6
Nn3g19512 Nelumbo nucifera HOM05D001069 ORTHO05D007586 3.7e-51 204.9 126 84.1
Prupe.6G344500 Prunus persica HOM05D001069 ORTHO05D007586 4.8e-51 204.5 126 83.3
Phvul.007G187900 Phaseolus vulgaris HOM05D001069 ORTHO05D007586 1.1e-50 203.4 126 83.3
CiPaw.08G122900 Carya illinoinensis HOM05D001069 ORTHO05D007586 1.4e-50 203.0 126 82.5
Duzib128G0644 Durio zibethinus HOM05D001069 ORTHO05D007586 1.4e-50 203.0 128 82.0
Aqoxy2G00949 Aquilegia oxysepala HOM05D001069 ORTHO05D007586 2.4e-50 202.2 128 80.5
CANSAT54G2612 Cannabis sativa HOM05D001069 ORTHO05D007586 3.1e-50 201.8 127 82.7
Peaxi162Scf00282g00417 Petunia axillaris HOM05D001069 ORTHO05D007586 3.1e-50 201.8 129 84.5
Atru.chr2.835 Acer truncatum HOM05D001069 ORTHO05D007586 4.1e-50 201.4 127 80.3
Haze_04370 Corylus avellana HOM05D001069 ORTHO05D007586 4.1e-50 201.4 125 83.2
Eucgr.H04324 Eucalyptus grandis HOM05D001069 ORTHO05D007586 4.1e-50 201.4 126 82.5
MD04G1225700 Malus domestica HOM05D001069 ORTHO05D007586 4.1e-50 201.4 126 82.5
Oeu002656.1 Olea europaea HOM05D001069 ORTHO05D007586 4.1e-50 201.4 129 83.7
Lj5g0026442 Lotus japonicus HOM05D001069 ORTHO05D007586 5.3e-50 201.1 128 81.2
Lalb_Chr21g0311011 Lupinus albus HOM05D001069 ORTHO05D007586 5.3e-50 201.1 126 82.5
GSVIVG01036275001 Vitis vinifera HOM05D001069 ORTHO05D007586 5.3e-50 201.1 126 82.5
VMungo0720G0790 Vigna mungo HOM05D001069 ORTHO05D007586 6.9e-50 200.7 126 82.5
arahy.Tifrunner.gnm1.ann1.SY74BB Arachis hypogaea HOM05D001069 ORTHO05D007586 9.0e-50 200.3 126 81.7
Glyma.20G225500 Glycine max HOM05D001069 ORTHO05D007586 9.0e-50 200.3 126 81.7
PGR004G2600 Punica granatum HOM05D001069 ORTHO05D007586 9.0e-50 200.3 126 82.5
Cfa006409 Carpinus fangiana HOM05D001069 ORTHO05D001549 1.2e-49 199.9 124 83.1
Duzib177G1121 Durio zibethinus HOM05D001069 ORTHO05D007586 1.5e-49 199.5 128 81.2
Lalb_Chr06g0168091 Lupinus albus HOM05D001069 ORTHO05D007586 1.5e-49 199.5 126 80.2
DCAR_006651 Daucus carota HOM05D001069 ORTHO05D007586 2.0e-49 199.1 128 82.0
FAN02G3324 Fragaria x ananassa HOM05D001069 ORTHO05D007586 2.6e-49 198.7 126 81.0
Potri.005G054500 Populus trichocarpa HOM05D001069 ORTHO05D007586 2.6e-49 198.7 126 82.5
FAN09G0270 Fragaria x ananassa HOM05D001069 ORTHO05D007586 3.4e-49 198.4 126 80.2
Glyma.10G162900 Glycine max HOM05D001069 ORTHO05D007586 3.4e-49 198.4 126 81.0
CiPaw.07G068400 Carya illinoinensis HOM05D001069 ORTHO05D007586 4.5e-49 198.0 126 81.0
FvH4_6g02700 Fragaria vesca HOM05D001069 ORTHO05D007586 4.5e-49 198.0 126 80.2
FAN14G5212 Fragaria x ananassa HOM05D001069 ORTHO05D007586 4.5e-49 198.0 126 80.2
COL.COLO4_15368 Corchorus olitorius HOM05D001069 ORTHO05D007586 5.8e-49 197.6 123 82.1
MD12G1242900 Malus domestica HOM05D001069 ORTHO05D007586 5.8e-49 197.6 126 81.0
RcHm_v2.0_Chr3g0450701 Rosa chinensis HOM05D001069 ORTHO05D007586 5.8e-49 197.6 126 79.4
arahy.Tifrunner.gnm1.ann1.AYUH3A Arachis hypogaea HOM05D001069 ORTHO05D007586 7.6e-49 197.2 126 81.0
FAN14G1639 Fragaria x ananassa HOM05D001069 ORTHO05D007586 7.6e-49 197.2 126 80.2
FAN14G4385 Fragaria x ananassa HOM05D001069 ORTHO05D007586 7.6e-49 197.2 126 80.2
MSTRG.20449 Avicennia marina HOM05D001069 ORTHO05D007586 1.0e-48 196.8 129 81.4
FAN05G3732 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.0e-48 196.8 126 79.4
Gohir.D13G107700 Gossypium hirsutum HOM05D001069 ORTHO05D007586 1.0e-48 196.8 128 79.7
Rhsim07G0074100 Rhododendron simsii HOM05D001069 ORTHO05D007586 1.0e-48 196.8 126 81.7
Dinv20292 Davidia involucrata HOM05D001069 ORTHO05D007586 1.3e-48 196.4 126 81.0
Gohir.A13G104300 Gossypium hirsutum HOM05D001069 ORTHO05D007586 1.3e-48 196.4 128 79.7
Psat6g145040 Pisum sativum HOM05D001069 ORTHO05D007586 1.7e-48 196.1 126 81.0
Sabra05G0047400 Salix brachista HOM05D001069 ORTHO05D001549 1.7e-48 196.1 126 81.7
SGA_v2.0_scaffold5G02970 Striga asiatica HOM05D001069 ORTHO05D007586 2.2e-48 195.7 129 80.6
HanXRQChr16g0514711 Helianthus annuus HOM05D001069 ORTHO05D007586 2.9e-48 195.3 128 80.5
Nitab4.5_0001592g0010 Nicotiana tabacum HOM05D001069 ORTHO05D007586 2.9e-48 195.3 129 82.2
Sed0025346 Sechium edule HOM05D001069 ORTHO05D007586 3.8e-48 194.9 126 77.8
Cc02_g30720 Coffea canephora HOM05D001069 ORTHO05D007586 6.5e-48 194.1 129 79.8
Gorai.013G120600 Gossypium raimondii HOM05D001069 ORTHO05D007586 6.5e-48 194.1 123 80.5
Nitab4.5_0008996g0040 Nicotiana tabacum HOM05D001069 ORTHO05D007586 6.5e-48 194.1 129 81.4
Potri.013G042100 Populus trichocarpa HOM05D001069 ORTHO05D007586 6.5e-48 194.1 126 79.4
Medtr1g080770 Medicago truncatula HOM05D001069 ORTHO05D007586 8.4e-48 193.7 126 80.2
ECA233G1896 Erigeron canadensis HOM05D000316 ORTHO05D000374 2.5e-47 192.2 128 78.1
TPR.G12907 Trifolium pratense HOM05D001069 ORTHO05D007586 2.5e-47 192.2 126 79.4
Ca_10042_v3 Cicer arietinum L. HOM05D001069 ORTHO05D007586 3.2e-47 191.8 124 79.0
ClCG02G016730 Citrullus lanatus HOM05D001069 ORTHO05D007586 3.2e-47 191.8 124 78.2
CDE06G2591 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 4.2e-47 191.4 126 79.4
MELO3C004390.2 Cucumis melo HOM05D001069 ORTHO05D007586 1.2e-46 189.9 126 76.2
TWI12G0612 Tripterygium wilfordii HOM05D001069 ORTHO05D007586 2.1e-46 189.1 126 77.0
CAN.G134.94 Capsicum annuum HOM05D001069 ORTHO05D007586 3.5e-46 188.3 122 81.1
Aa31sc20G40 Aethionema arabicum HOM05D001069 ORTHO05D007586 4.6e-46 188.0 128 76.6
Sc09g0003960 Simmondsia chinensis HOM05D001069 ORTHO05D007586 6.1e-46 187.6 126 76.2
THA.LOC104823751 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 6.1e-46 187.6 126 77.0
unitig_52.g17389 Utricularia gibba HOM05D001069 ORTHO05D007586 7.9e-46 187.2 122 78.7
Migut.B01094 Erythranthe guttata HOM05D001069 ORTHO05D007586 1.0e-45 186.8 129 76.7
Os03g0628900 Oryza sativa ssp. japonica HOM05D001069 ORTHO05D007586 1.0e-45 186.8 126 75.4
THA.LOC104805822 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 1.8e-45 186.0 126 77.0
BcaB07g34137 Brassica carinata HOM05D001069 ORTHO05D007586 5.1e-45 184.5 130 76.2
A06p05680 Brassica napus HOM05D001069 ORTHO05D007586 1.1e-44 183.3 130 75.4
CARHR008700 Cardamine hirsuta HOM05D001069 ORTHO05D007586 1.1e-44 183.3 131 75.6
EL10Ac4g09163 Beta vulgaris HOM05D001069 ORTHO05D007586 3.3e-44 181.8 126 74.6
Sp1g07420 Schrenkiella parvula HOM05D001069 ORTHO05D007586 4.3e-44 181.4 131 74.0
BcaNung06267 Brassica carinata HOM05D001069 ORTHO05D007586 5.7e-44 181.0 131 72.5
C05p06850 Brassica napus HOM05D001069 ORTHO05D007586 5.7e-44 181.0 128 73.4
Thhalv10009095m.g Eutrema salsugineum HOM05D001069 ORTHO05D007586 5.7e-44 181.0 131 74.0
AL1G19210 Arabidopsis lyrata HOM05D001069 ORTHO05D007586 9.7e-44 180.3 130 73.8
AUR62000994 Chenopodium quinoa HOM05D001069 ORTHO05D007586 1.6e-43 179.5 126 73.8
AUR62004967 Chenopodium quinoa HOM05D001069 ORTHO05D007586 1.6e-43 179.5 126 73.8
Sed0020567 Sechium edule HOM05D001069 ORTHO05D007586 1.6e-43 179.5 126 70.6
A08p34980 Brassica napus HOM05D001069 ORTHO05D007586 2.2e-43 179.1 127 72.4
BraA08t35409Z Brassica rapa HOM05D001069 ORTHO05D007586 2.8e-43 178.7 127 72.4
Ciclev10029576m.g Citrus clementina HOM05D001069 ORTHO05D007586 2.8e-43 178.7 126 73.0
Hund22103 Selenicereus undatus HOM05D001069 ORTHO05D007586 3.7e-43 178.3 124 73.4
ATR0665G433 Amborella trichopoda HOM05D001069 ORTHO05D007586 4.8e-43 177.9 126 74.6
BcaC07g38446 Brassica carinata HOM05D001069 ORTHO05D007586 8.2e-43 177.2 132 71.2
C08p12160 Brassica napus HOM05D001069 ORTHO05D007586 8.2e-43 177.2 132 71.2
AT1G08780 Arabidopsis thaliana HOM05D001069 ORTHO05D007586 1.1e-42 176.8 130 73.1
CsaV3_2G004010 Cucumis sativus L. HOM05D001069 ORTHO05D007586 1.4e-42 176.4 126 72.2
BolC5t29444H Brassica oleracea HOM05D001069 ORTHO05D007586 4.1e-42 174.9 119 75.6
BraA06t23778Z Brassica rapa HOM05D001069 ORTHO05D007586 4.1e-42 174.9 119 75.6
Carub.0001s0812 Capsella rubella HOM05D001069 ORTHO05D007586 2.0e-41 172.6 119 74.8
CDE07G0518 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 2.0e-41 172.6 126 73.8
PGSC0003DMG401019457 Solanum tuberosum HOM05D001069 ORTHO05D007586 5.5e-39 164.5 129 71.3
HanXRQChr17g0559331 Helianthus annuus HOM05D001069 ORTHO05D007586 7.2e-39 164.1 126 70.6
Zm00001eb051110 Zea mays HOM05D001069 ORTHO05D007586 1.6e-38 162.9 126 68.3
MBI04_g44868_MAGBIO Magnolia biondii HOM05D001069 ORTHO05D007586 3.6e-38 161.8 126 68.3
BolC8t48854H Brassica oleracea HOM05D001069 ORTHO05D007586 4.6e-38 161.4 152 59.2
HPP92_026288 Vanilla planifolia HOM05D001069 ORTHO05D007586 6.1e-38 161.0 126 68.3
Solyc01g097300.4 Solanum lycopersicum HOM05D001069 ORTHO05D007586 1.8e-37 159.5 129 69.8
Sopen01g040970 Solanum pennellii HOM05D001069 ORTHO05D007586 1.8e-37 159.5 129 69.8
Zm00001eb218870 Zea mays HOM05D001069 ORTHO05D007586 3.9e-37 158.3 126 66.7
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 1.4e-34 149.8 154 58.4
Pp3c16_6640 Physcomitrium patens HOM05D001069 ORTHO05D007586 5.9e-33 144.4 126 61.9
AagrBONN_evm.TU.Sc2ySwM_369.398 Anthoceros agrestis HOM05D001069 ORTHO05D007586 2.9e-32 142.1 126 60.3
CBR_g8595 Chara braunii HOM05D001069 ORTHO05D007586 3.8e-32 141.7 126 58.7
arahy.Tifrunner.gnm1.ann1.VQ2WN5 Arachis hypogaea HOM05D001069 ORTHO05D007586 2.1e-30 136.0 88 77.3
Sabra13G0038700 Salix brachista HOM05D001069 ORTHO05D007586 6.7e-29 131.0 88 77.3
Mapoly0094s0008 Marchantia polymorpha HOM05D001069 ORTHO05D007586 9.7e-28 127.1 126 54.0
vmacro13808 Vaccinium macrocarpon HOM05D001069 ORTHO05D007586 1.7e-27 126.3 87 77.0
Lsat_1_v5_gn_5_68360 Lactuca sativa HOM05D001069 ORTHO05D007586 6.3e-27 124.4 87 74.7
SMO356G0364 Selaginella moellendorffii HOM05D001069 ORTHO05D007586 8.2e-27 124.0 133 53.4
SHI18420 Sapria himalayana HOM05D001069 ORTHO05D007586 1.1e-23 113.6 87 69.0
MCO16G237 Micromonas commoda HOM05D001069 ORTHO05D007586 6.1e-22 107.8 120 49.2
PRCOL_00003582 Prasinoderma coloniale HOM05D001069 ORTHO05D007586 3.5e-17 92.0 121 45.5
Cre16.g671750 Chlamydomonas reinhardtii HOM05D001069 ORTHO05D007586 1.0e-16 90.5 121 43.0
TAR365G0807 Trochodendron aralioides HOM05D001069 ORTHO05D007586 3.6e-14 82.0 61 72.1
arahy.Tifrunner.gnm1.ann1.JAH3YR Arachis hypogaea HOM05D001069 ORTHO05D007586 7.5e-12 74.3 38 92.1
Sabra13G0038600 Salix brachista HOM05D000002 ORTHO05D000001 1.1e-10 70.5 54 70.4
arahy.Tifrunner.gnm1.ann1.X5I3PL Arachis hypogaea HOM05D001069 ORTHO05D007586 2.4e-10 69.3 46 76.1
TAR633G2811 Trochodendron aralioides HOM05D001069 ORTHO05D007586 5.9e-09 64.7 32 93.8
SHI18422 Sapria himalayana HOM05D001069 ORTHO05D007586 3.2e-07 58.9 41 68.3
Cfa022668 Carpinus fangiana HOM05D013358 ORTHO05D124219 1.6e-06 56.6 119 33.6


User provided reference genes

Program Settings