Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G4243 Papaver somniferum HOM05D005077 ORTHO05D006889 0.0e+00 1507.3 746 100.0
PSO832G3809 Papaver somniferum HOM05D005077 ORTHO05D006889 0.0e+00 1487.2 746 98.8
TAR362G0145 Trochodendron aralioides HOM05D005077 ORTHO05D006889 3.4e-298 1028.1 746 69.4
GSVIVG01023486001 Vitis vinifera HOM05D005077 ORTHO05D006889 4.4e-290 1001.1 748 67.6
Aqoxy5G00195 Aquilegia oxysepala HOM05D005077 ORTHO05D006889 1.1e-280 969.9 753 66.5
Cfa006359 Carpinus fangiana HOM05D005077 ORTHO05D006889 5.4e-280 967.6 746 64.5
CiPaw.07G073200 Carya illinoinensis HOM05D005077 ORTHO05D006889 1.7e-278 962.6 750 64.8
Prupe.6G350500 Prunus persica HOM05D005077 ORTHO05D006889 4.5e-274 948.0 746 64.7
Potri.013G047400 Populus trichocarpa HOM05D005077 ORTHO05D006889 6.4e-273 944.1 747 64.3
Thecc.05G270400 Theobroma cacao HOM05D005077 ORTHO05D006889 6.4e-273 944.1 746 63.8
Manes.08G139800 Manihot esculenta HOM05D005077 ORTHO05D006889 2.3e-270 935.6 751 64.8
Nn1g02888 Nelumbo nucifera HOM05D005077 ORTHO05D006889 3.9e-270 934.9 682 69.6
Potri.019G019600 Populus trichocarpa HOM05D005077 ORTHO05D006889 5.1e-270 934.5 746 63.3
Actinidia39994 Actinidia chinensis HOM05D005077 ORTHO05D006889 6.7e-270 934.1 746 63.3
MD04G1230700 Malus domestica HOM05D005077 ORTHO05D006889 6.2e-268 927.5 746 63.8
MBI10_g13801_MAGBIO Magnolia biondii HOM05D005077 ORTHO05D006889 6.9e-267 924.1 730 65.1
Duzib177G0384 Durio zibethinus HOM05D005077 ORTHO05D006889 9.0e-267 923.7 746 62.7
Gorai.007G275500 Gossypium raimondii HOM05D005077 ORTHO05D006889 6.7e-262 907.5 748 62.3
Gohir.D11G257100 Gossypium hirsutum HOM05D005077 ORTHO05D006889 8.7e-262 907.1 748 62.2
RcHm_v2.0_Chr3g0449521 Rosa chinensis HOM05D005077 ORTHO05D006889 9.6e-261 903.7 746 62.1
CANSAT54G1999 Cannabis sativa HOM05D005077 ORTHO05D006889 8.2e-260 900.6 746 61.7
TWI36G1092 Tripterygium wilfordii HOM05D005077 ORTHO05D006889 4.1e-259 898.3 748 61.6
FvH4_6g01810 Fragaria vesca HOM05D005077 ORTHO05D006889 5.3e-259 897.9 746 61.5
Solyc04g010080.3 Solanum lycopersicum HOM05D005077 ORTHO05D006889 2.6e-258 895.6 746 62.5
MELO3C008703.2 Cucumis melo HOM05D005077 ORTHO05D006889 1.3e-257 893.3 748 61.4
Glyma.19G115700 Glycine max HOM05D005077 ORTHO05D006889 1.3e-257 893.3 751 61.9
ATR0736G030 Amborella trichopoda HOM05D005077 ORTHO05D006889 2.2e-257 892.5 747 61.8
Sopen04g005220 Solanum pennellii HOM05D005077 ORTHO05D006889 2.9e-257 892.1 746 62.2
COL.COLO4_15493 Corchorus olitorius HOM05D005077 ORTHO05D006889 3.8e-257 891.7 768 60.2
Sed0014730 Sechium edule HOM05D005077 ORTHO05D006889 5.0e-257 891.3 747 61.0
Psat3g087440 Pisum sativum HOM05D005077 ORTHO05D006889 1.4e-256 889.8 752 60.9
Lj1g0022218 Lotus japonicus HOM05D005077 ORTHO05D006889 9.3e-256 887.1 751 61.5
TPR.G4698 Trifolium pratense HOM05D005077 ORTHO05D006889 1.2e-255 886.7 752 60.9
PGR142G0621 Punica granatum HOM05D005077 ORTHO05D006889 2.7e-255 885.6 746 61.8
Medtr7g111650 Medicago truncatula HOM05D005077 ORTHO05D006889 6.1e-255 884.4 748 61.4
PGSC0003DMG400011494 Solanum tuberosum HOM05D005077 ORTHO05D006889 2.3e-254 882.5 771 60.7
CARHR078630 Cardamine hirsuta HOM05D005077 ORTHO05D006889 3.9e-254 881.7 742 62.0
THA.LOC104827285 Tarenaya hassleriana HOM05D005077 ORTHO05D006889 2.5e-253 879.0 748 61.5
HanXRQChr14g0454211 Helianthus annuus HOM05D005077 ORTHO05D006889 5.7e-253 877.9 749 60.3
Thhalv10020155m.g Eutrema salsugineum HOM05D005077 ORTHO05D006889 3.7e-252 875.2 744 61.6
Sc20g0000660 Simmondsia chinensis HOM05D005077 ORTHO05D006889 6.3e-252 874.4 747 60.5
Ca_08303_v3 Cicer arietinum L. HOM05D005077 ORTHO05D006889 5.3e-251 871.3 776 58.8
Lj2A44T74 Lonicera japonica HOM05D005077 ORTHO05D006889 9.0e-251 870.5 801 57.1
Oeu006006.2 Olea europaea HOM05D005077 ORTHO05D006889 1.2e-250 870.2 749 59.7
VMungo1383G1518 Vigna mungo HOM05D005077 ORTHO05D006889 2.0e-250 869.4 749 60.6
ECA238G3062 Erigeron canadensis HOM05D005077 ORTHO05D006889 2.6e-250 869.0 740 60.1
AT3G04480 Arabidopsis thaliana HOM05D005077 ORTHO05D006889 3.4e-250 868.6 744 60.9
Carub.0003s0364 Capsella rubella HOM05D005077 ORTHO05D006889 7.7e-250 867.5 742 60.5
BcaB04g19332 Brassica carinata HOM05D005077 ORTHO05D006889 3.8e-249 865.1 750 61.2
AL3G14430 Arabidopsis lyrata HOM05D005077 ORTHO05D006889 1.4e-248 863.2 742 60.4
Aa31LG5G14920 Aethionema arabicum HOM05D005077 ORTHO05D006889 3.2e-248 862.1 763 59.9
Phvul.001G114900 Phaseolus vulgaris HOM05D005077 ORTHO05D006889 9.4e-248 860.5 747 60.4
MSTRG.27374 Avicennia marina HOM05D005077 ORTHO05D006889 1.2e-247 860.1 748 58.6
ClCG11G010550 Citrullus lanatus HOM05D005077 ORTHO05D006889 1.2e-247 860.1 742 59.4
C05p62770 Brassica napus HOM05D005077 ORTHO05D006889 3.6e-247 858.6 742 61.1
BraA03t12537Z Brassica rapa HOM05D005077 ORTHO05D006889 3.6e-247 858.6 748 60.6
Rhsim05G0172000 Rhododendron simsii HOM05D005077 ORTHO05D006889 3.6e-247 858.6 771 59.0
BolC5t34930H Brassica oleracea HOM05D005077 ORTHO05D006889 1.8e-246 856.3 742 60.9
BcaC05g30222 Brassica carinata HOM05D005077 ORTHO05D006889 2.3e-246 855.9 742 59.8
Cpa.g.sc306.8 Carica papaya HOM05D005077 ORTHO05D006889 5.1e-246 854.7 663 65.5
Migut.F00798 Erythranthe guttata HOM05D005077 ORTHO05D006889 4.3e-245 851.7 750 58.9
Sabra19G0032000 Salix brachista HOM05D005077 ORTHO05D006889 1.3e-244 850.1 829 55.9
CSS0033596 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D006889 2.8e-244 849.0 673 64.2
SalBow3G3009 Salvia bowleyana HOM05D005077 ORTHO05D006889 1.1e-243 847.0 748 58.7
A03p33620 Brassica napus HOM05D005077 ORTHO05D006889 1.4e-243 846.7 743 60.6
Nitab4.5_0006737g0070 Nicotiana tabacum HOM05D005077 ORTHO05D006889 9.1e-243 844.0 768 57.4
FAN14G3018 Fragaria x ananassa HOM05D005077 ORTHO05D006889 2.0e-242 842.8 784 57.0
BraA05t23044Z Brassica rapa HOM05D005077 ORTHO05D006889 2.6e-242 842.4 747 60.6
FAN09G0372 Fragaria x ananassa HOM05D005077 ORTHO05D006889 2.6e-242 842.4 781 57.1
Eucgr.B02151 Eucalyptus grandis HOM05D005077 ORTHO05D006889 3.4e-242 842.0 750 58.4
FAN14G2113 Fragaria x ananassa HOM05D005077 ORTHO05D006889 7.7e-242 840.9 784 56.9
BcaC01g04375 Brassica carinata HOM05D005077 ORTHO05D006889 2.2e-241 839.3 747 60.2
A05p43000 Brassica napus HOM05D005077 ORTHO05D006889 2.2e-241 839.3 743 60.3
C03p40820 Brassica napus HOM05D005077 ORTHO05D006889 2.2e-241 839.3 747 60.2
EL10Ac9g21459 Beta vulgaris HOM05D005077 ORTHO05D006889 2.9e-241 839.0 748 58.6
BolC3t16351H Brassica oleracea HOM05D005077 ORTHO05D006889 8.5e-241 837.4 753 60.4
BcaC05g29939 Brassica carinata HOM05D005077 ORTHO05D006889 2.7e-239 832.4 746 60.2
Atru.chr2.993 Acer truncatum HOM05D005077 ORTHO05D006889 1.1e-235 820.5 607 68.4
Os02g0810450 Oryza sativa ssp. japonica HOM05D005077 ORTHO05D006889 1.2e-234 817.0 752 57.2
Ciclev10019185m.g Citrus clementina HOM05D005077 ORTHO05D006889 1.5e-234 816.6 671 63.8
Lsat_1_v5_gn_2_108321 Lactuca sativa HOM05D005077 ORTHO05D006889 1.5e-234 816.6 745 57.7
QL07p018541 Quercus lobata HOM05D005077 ORTHO05D006889 7.7e-234 814.3 662 63.3
HPP92_014753 Vanilla planifolia HOM05D005077 ORTHO05D006889 6.7e-230 801.2 745 56.8
Hund06905 Selenicereus undatus HOM05D005077 ORTHO05D006889 2.8e-228 795.8 764 56.5
vmacro19987 Vaccinium macrocarpon HOM05D005077 ORTHO05D006889 4.8e-228 795.0 813 52.9
arahy.Tifrunner.gnm1.ann1.2V8KIQ Arachis hypogaea HOM05D005077 ORTHO05D006889 2.4e-227 792.7 749 56.5
AUR62013106 Chenopodium quinoa HOM05D005077 ORTHO05D006889 1.7e-225 786.6 765 55.9
Sabra13G0043400 Salix brachista HOM05D005077 ORTHO05D006889 6.1e-223 778.1 695 58.6
BcaC05g30195 Brassica carinata HOM05D005077 ORTHO05D006889 2.8e-220 769.2 742 56.6
DCAR_003547 Daucus carota HOM05D005077 ORTHO05D006889 5.4e-219 765.0 757 54.4
Gohir.A11G246900 Gossypium hirsutum HOM05D005077 ORTHO05D006889 1.2e-218 763.8 673 60.0
Lalb_Chr22g0358841 Lupinus albus HOM05D005077 ORTHO05D006889 8.5e-217 757.7 675 58.2
Peaxi162Scf00528g00225 Petunia axillaris HOM05D005077 ORTHO05D006889 1.1e-216 757.3 750 55.2
CsaV3_2G009810 Cucumis sativus L. HOM05D005077 ORTHO05D006889 1.7e-212 743.4 666 58.6
Cc02_g08770 Coffea canephora HOM05D005077 ORTHO05D006889 5.0e-209 731.9 670 58.4
Dinv35947 Davidia involucrata HOM05D005077 ORTHO05D006889 5.0e-209 731.9 571 66.5
SGA_v2.0_scaffold1G00651 Striga asiatica HOM05D005077 ORTHO05D006889 7.2e-208 728.0 822 50.1
arahy.Tifrunner.gnm1.ann1.FVV1VG Arachis hypogaea HOM05D005077 ORTHO05D006889 1.6e-207 726.9 766 52.2
CDE07G0212 Ceratophyllum demersum HOM05D005077 ORTHO05D006889 4.9e-204 715.3 744 52.2
Nitab4.5_0003780g0090 Nicotiana tabacum HOM05D005077 ORTHO05D006889 2.3e-201 706.4 746 52.1
arahy.Tifrunner.gnm1.ann1.2UET99 Arachis hypogaea HOM05D005077 ORTHO05D006889 3.2e-195 686.0 749 51.3
arahy.Tifrunner.gnm1.ann1.BW8NI8 Arachis hypogaea HOM05D005077 ORTHO05D006889 4.1e-195 685.6 742 51.2
Hma1.2p1_0114F.1_g055300 Hydrangea macrophylla HOM05D005077 ORTHO05D006889 1.2e-181 641.0 620 55.6
CAN.G786.40 Capsicum annuum HOM05D005077 ORTHO05D006889 1.2e-178 630.9 624 55.1
Haze_04419 Corylus avellana HOM05D005077 ORTHO05D006889 3.5e-178 629.4 933 42.2
unitig_748.g6990 Utricularia gibba HOM05D005077 ORTHO05D006889 4.0e-174 615.9 750 47.5
Zm00001eb258450 Zea mays HOM05D005077 ORTHO05D006889 2.0e-173 613.6 647 51.8
AagrBONN_evm.TU.Sc2ySwM_362.1555 Anthoceros agrestis HOM05D005077 ORTHO05D006889 8.4e-172 608.2 778 46.0
Pp3c11_830 Physcomitrium patens HOM05D005077 ORTHO05D006889 5.4e-163 578.9 592 53.5
arahy.Tifrunner.gnm1.ann1.CACA61 Arachis hypogaea HOM05D005077 ORTHO05D006889 1.2e-162 577.8 742 46.6
Sp3g03330 Schrenkiella parvula HOM05D005077 ORTHO05D006889 3.1e-158 563.1 563 55.6
CBR_g3613 Chara braunii HOM05D005077 ORTHO05D006889 7.1e-155 552.0 613 49.8
Oeu041238.1 Olea europaea HOM05D005077 ORTHO05D006889 2.1e-154 550.4 663 48.6
Mapoly0027s0145 Marchantia polymorpha HOM05D005077 ORTHO05D006889 6.0e-154 548.9 606 49.3
SMO348G0068 Selaginella moellendorffii HOM05D005077 ORTHO05D006889 9.6e-152 541.6 551 53.9
Eucgr.B02424 Eucalyptus grandis HOM05D005077 ORTHO05D006889 2.1e-138 497.3 531 51.2
SEGI_09343 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 8.2e-127 458.8 396 58.8
AUR62010111 Chenopodium quinoa HOM05D005077 ORTHO05D006889 1.8e-105 387.9 409 51.8
MCO10G045 Micromonas commoda HOM05D005077 ORTHO05D006889 3.3e-91 340.5 621 36.2
PGSC0003DMG400019115 Solanum tuberosum HOM05D005077 ORTHO05D006889 3.0e-89 334.0 355 51.8
Cre01.g033091 Chlamydomonas reinhardtii HOM05D005077 ORTHO05D006889 1.6e-77 295.0 705 31.1
PRCOL_00005667 Prasinoderma coloniale HOM05D005077 ORTHO05D006889 4.3e-75 287.0 618 33.8
SEGI_01626 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 2.2e-71 274.6 376 43.4
SEGI_03702 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 3.0e-52 211.1 229 48.0
SEGI_18706 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 3.0e-52 211.1 229 48.0
SHI22754 Sapria himalayana HOM05D005077 ORTHO05D006889 2.4e-49 201.4 187 59.9
FAN05G0362 Fragaria x ananassa HOM05D005077 ORTHO05D006889 2.1e-45 188.3 146 66.4
Cfa026934 Carpinus fangiana HOM05D005077 ORTHO05D006889 2.3e-44 184.9 531 30.1
FAN05G3606 Fragaria x ananassa HOM05D005077 ORTHO05D019498 5.8e-40 170.2 192 46.9
BcaC01g04372 Brassica carinata HOM05D003677 ORTHO05D004231 6.9e-33 146.7 102 69.6
Duzib106G1915 Durio zibethinus HOM05D005077 ORTHO05D006889 2.6e-32 144.8 160 48.8
Lalb_Chr22g0358851 Lupinus albus HOM05D005077 ORTHO05D006889 5.8e-32 143.7 77 84.4
QL07p018546 Quercus lobata HOM05D005077 ORTHO05D006889 1.7e-31 142.1 77 80.5
Cc02_g08780 Coffea canephora HOM05D005077 ORTHO05D006889 1.4e-30 139.0 77 81.8
C08p13010 Brassica napus HOM05D005077 ORTHO05D006889 9.3e-22 109.8 56 87.5
PGSC0003DMG400019116 Solanum tuberosum HOM05D005077 ORTHO05D018175 2.7e-21 108.2 96 53.1
CSS0009313 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 5.3e-17 94.0 77 58.4
arahy.Tifrunner.gnm1.ann1.TVQ2CS Arachis hypogaea HOM05D005077 ORTHO05D006889 7.7e-16 90.1 172 36.6
BcaC05g29940 Brassica carinata HOM05D005077 ORTHO05D018175 2.5e-14 85.1 191 37.2
EL10Ac5g11645 Beta vulgaris HOM05D005077 ORTHO05D006889 4.2e-14 84.3 47 76.6
Peaxi162Scf00528g00025 Petunia axillaris HOM05D000011 ORTHO05D015719 3.6e-13 81.3 62 61.3
Atru.chr2.994 Acer truncatum HOM05D005077 ORTHO05D018175 1.5e-11 75.9 72 54.2
CSS0021399 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 3.3e-11 74.7 67 56.7
CSS0037989 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 4.8e-10 70.9 67 53.7
Hund05190 Selenicereus undatus HOM05D005077 ORTHO05D006889 1.5e-08 65.9 56 58.9
C05p29450 Brassica napus HOM05D005077 ORTHO05D018175 7.2e-06 57.0 50 50.0
BolC5t31675H Brassica oleracea HOM05D005077 ORTHO05D018175 7.2e-06 57.0 50 50.0


User provided reference genes

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