Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 6.5e-124 447.6 235 100.0
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 3.3e-115 418.7 235 93.6
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 3.4e-48 196.1 232 50.9
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 7.6e-48 194.9 194 53.1
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 1.0e-44 184.5 188 55.3
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 2.8e-42 176.4 194 51.5
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 3.1e-41 172.9 207 46.9
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 5.3e-41 172.2 200 49.5
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 6.9e-41 171.8 228 45.2
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 6.9e-41 171.8 180 53.3
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 2.0e-40 170.2 164 57.9
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 5.9e-40 168.7 162 54.9
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 5.9e-40 168.7 154 56.5
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 1.3e-39 167.5 178 51.1
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 3.8e-39 166.0 225 43.1
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 6.5e-39 165.2 186 50.0
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 8.5e-39 164.9 227 44.9
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 8.5e-39 164.9 154 56.5
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 1.1e-38 164.5 152 54.6
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 1.1e-38 164.5 165 55.2
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 2.5e-38 163.3 220 44.5
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 4.2e-38 162.5 176 52.3
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 5.5e-38 162.2 157 52.9
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 7.2e-38 161.8 205 49.3
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 9.4e-38 161.4 154 55.8
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 1.6e-37 160.6 157 52.9
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 2.1e-37 160.2 150 57.3
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 4.6e-37 159.1 165 50.3
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 4.6e-37 159.1 187 48.7
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 6.1e-37 158.7 161 52.2
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 1.0e-36 157.9 236 43.6
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.4e-36 157.5 222 41.4
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 2.3e-36 156.8 179 49.2
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 3.0e-36 156.4 157 51.6
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 3.9e-36 156.0 162 46.9
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 3.9e-36 156.0 157 51.6
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 1.1e-35 154.5 236 40.7
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 2.0e-35 153.7 149 51.7
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 2.0e-35 153.7 222 40.5
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 2.0e-35 153.7 147 53.7
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 2.5e-35 153.3 225 43.6
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 2.5e-35 153.3 169 47.9
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 4.3e-35 152.5 149 51.0
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 5.7e-35 152.1 223 41.3
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 1.3e-34 151.0 174 51.1
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 1.7e-34 150.6 184 47.8
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 1.1e-33 147.9 160 51.9
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 6.9e-33 145.2 151 47.7
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 1.3e-31 141.0 183 45.4
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 2.9e-31 139.8 147 48.3
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 2.5e-30 136.7 138 50.7
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 4.2e-30 136.0 197 42.6
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 4.2e-30 136.0 154 48.7
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 4.2e-30 136.0 152 47.4
Ca_20812_v3 Cicer arietinum L. HOM05D003796 ORTHO05D004486 7.2e-30 135.2 153 50.3
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 1.2e-29 134.4 128 51.6
Nitab4.5_0007977g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 8.8e-28 128.3 158 48.1
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 1.1e-27 127.9 149 45.0
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 1.1e-27 127.9 282 33.7
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 5.7e-27 125.6 111 56.8
Peaxi162Scf00568g00527 Petunia axillaris HOM05D003796 ORTHO05D004486 1.7e-26 124.0 155 45.8
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 2.2e-26 123.6 213 39.0
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 2.8e-26 123.2 250 35.2
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 3.7e-26 122.9 231 36.4
Cc06_g21590 Coffea canephora HOM05D003796 ORTHO05D004486 8.2e-26 121.7 107 54.2
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 8.2e-26 121.7 165 40.6
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 1.6e-24 117.5 226 33.6
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 3.5e-24 116.3 228 36.8
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 1.0e-23 114.8 100 56.0
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 1.0e-23 114.8 178 39.9
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 2.3e-20 103.6 128 41.4
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 4.0e-20 102.8 220 30.0
Hund03191 Selenicereus undatus HOM05D003796 ORTHO05D004486 3.3e-19 99.8 147 39.5
AUR62002376 Chenopodium quinoa HOM05D003796 ORTHO05D004486 9.7e-19 98.2 106 43.4
AUR62023807 Chenopodium quinoa HOM05D003796 ORTHO05D004486 9.7e-19 98.2 106 43.4
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 1.7e-18 97.4 132 34.8
Ah.13g073570 Amaranthus hybridus HOM05D003796 ORTHO05D004486 2.8e-18 96.7 205 34.6
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 2.8e-18 96.7 90 56.7
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 4.8e-18 95.9 214 31.3
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 4.8e-18 95.9 163 31.9
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 6.3e-18 95.5 173 32.4
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 6.3e-18 95.5 112 43.8
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 8.2e-18 95.1 119 37.0
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 8.2e-18 95.1 213 31.5
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 1.1e-17 94.7 116 38.8
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 1.1e-17 94.7 140 37.9
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 1.1e-17 94.7 130 35.4
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 1.1e-17 94.7 120 38.3
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 1.4e-17 94.4 173 33.5
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 2.4e-17 93.6 124 35.5
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 2.4e-17 93.6 148 33.8
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 3.1e-17 93.2 186 31.2
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 4.1e-17 92.8 171 29.8
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 7.0e-17 92.0 124 36.3
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 9.1e-17 91.7 143 34.3
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 9.1e-17 91.7 147 32.7
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 1.2e-16 91.3 202 29.2
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 1.2e-16 91.3 154 31.2
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 1.2e-16 91.3 191 30.4
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.2e-16 91.3 121 34.7
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.2e-16 91.3 121 34.7
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 1.6e-16 90.9 124 34.7
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 2.7e-16 90.1 141 31.9
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 2.7e-16 90.1 119 35.3
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 2.7e-16 90.1 120 35.8
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 2.7e-16 90.1 119 36.1
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 3.5e-16 89.7 164 29.9
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 4.5e-16 89.4 192 30.2
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 4.5e-16 89.4 123 32.5
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 4.5e-16 89.4 149 34.2
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 5.9e-16 89.0 117 35.0
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 5.9e-16 89.0 113 34.5
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 5.9e-16 89.0 113 34.5
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 5.9e-16 89.0 186 29.6
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 7.7e-16 88.6 124 33.9
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 7.7e-16 88.6 180 31.1
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 7.7e-16 88.6 208 28.8
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 1.3e-15 87.8 141 31.9
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 1.3e-15 87.8 204 30.4
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 1.3e-15 87.8 169 29.0
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 1.7e-15 87.4 159 32.7
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 2.2e-15 87.0 214 29.9
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 2.2e-15 87.0 123 30.9
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 2.2e-15 87.0 148 33.1
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 2.2e-15 87.0 125 35.2
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 2.2e-15 87.0 162 31.5
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 2.2e-15 87.0 219 28.3
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 2.9e-15 86.7 119 35.3
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 2.9e-15 86.7 118 34.7
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 3.8e-15 86.3 174 32.2
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 8.5e-15 85.1 119 38.7
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 1.1e-14 84.7 128 35.9
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 1.5e-14 84.3 125 34.4
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 4.2e-14 82.8 136 30.9
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 4.2e-14 82.8 125 31.2
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 5.5e-14 82.4 91 41.8
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 5.5e-14 82.4 105 33.3
Nitab4.5_0000856g0240 Nicotiana tabacum HOM05D003796 ORTHO05D004486 1.2e-13 81.3 104 47.1
Oeu021569.1 Olea europaea HOM05D003796 ORTHO05D004486 1.6e-13 80.9 87 49.4
ClCG06G001080 Citrullus lanatus HOM05D003796 ORTHO05D004486 2.1e-13 80.5 129 41.9
FAN07G1083 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.1e-13 80.5 104 46.2
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 2.7e-13 80.1 142 30.3
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 3.6e-13 79.7 142 29.6
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 3.6e-13 79.7 211 28.9
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 8.0e-13 78.6 188 26.1
QL10p054570 Quercus lobata HOM05D003796 ORTHO05D004486 1.8e-12 77.4 94 47.9
FAN22G2021 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.3e-12 77.0 148 37.8
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 2.3e-12 77.0 125 32.8
QL93p1902_0792 Quercus lobata HOM05D003796 ORTHO05D004486 4.0e-12 76.3 138 37.0
Sabra13G0104400 Salix brachista HOM05D003796 ORTHO05D004486 5.2e-12 75.9 143 36.4
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 6.8e-12 75.5 180 30.0
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 1.2e-11 74.7 151 28.5
QL10p054574 Quercus lobata HOM05D003796 ORTHO05D004486 1.5e-11 74.3 63 61.9
QL93p1902_0789 Quercus lobata HOM05D003796 ORTHO05D004486 1.5e-11 74.3 63 61.9
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 3.4e-11 73.2 178 26.4
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 5.7e-11 72.4 150 26.7
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 9.8e-11 71.6 116 31.0
FAN12G2909 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.7e-10 70.9 141 35.5
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.8e-09 67.4 171 27.5
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 5.4e-09 65.9 147 27.9
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.6e-08 64.3 213 23.5
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 3.5e-08 63.2 162 25.9
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 5.0e-07 59.3 176 22.7


User provided reference genes

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