Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G4010 Papaver somniferum HOM05D005046 ORTHO05D006194 7.1e-51 203.8 112 100.0
PSO761G0203 Papaver somniferum HOM05D005046 ORTHO05D006194 7.1e-51 203.8 112 100.0
GSVIVG01034987001 Vitis vinifera HOM05D005046 ORTHO05D006194 5.5e-43 177.6 112 86.6
TAR636G1364 Trochodendron aralioides HOM05D005046 ORTHO05D006194 9.3e-43 176.8 112 86.6
Aqoxy5G02541 Aquilegia oxysepala HOM05D005046 ORTHO05D006194 2.7e-42 175.3 112 86.6
Lsat_1_v5_gn_1_41381 Lactuca sativa HOM05D005046 ORTHO05D006194 2.7e-42 175.3 110 87.3
HanXRQChr11g0353491 Helianthus annuus HOM05D005046 ORTHO05D006194 4.6e-42 174.5 110 87.3
Dinv44282 Davidia involucrata HOM05D005046 ORTHO05D006194 6.1e-42 174.1 112 85.7
PSO063G6303 Papaver somniferum HOM05D005046 ORTHO05D006194 1.3e-41 172.9 112 83.0
Lj6A691T78 Lonicera japonica HOM05D005046 ORTHO05D006194 1.8e-41 172.6 112 84.8
Nn3g21734 Nelumbo nucifera HOM05D005046 ORTHO05D006194 2.3e-41 172.2 112 83.0
CDE02G0992 Ceratophyllum demersum HOM05D005046 ORTHO05D006194 3.9e-41 171.4 112 84.8
Dinv15163 Davidia involucrata HOM05D005046 ORTHO05D006194 3.9e-41 171.4 112 83.9
PSO017G4602 Papaver somniferum HOM05D005046 ORTHO05D006194 5.1e-41 171.0 112 84.8
Glyma.17G033800 Glycine max HOM05D005046 ORTHO05D006194 1.1e-40 169.9 112 83.9
Lalb_Chr20g0120821 Lupinus albus HOM05D005046 ORTHO05D006194 1.1e-40 169.9 112 85.7
CSS0005662 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 1.9e-40 169.1 112 83.9
CSS0011224 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 1.9e-40 169.1 112 83.9
CSS0039452 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 1.9e-40 169.1 112 83.9
Actinidia14256 Actinidia chinensis HOM05D005046 ORTHO05D006194 3.3e-40 168.3 112 82.1
Glyma.07G239500 Glycine max HOM05D005046 ORTHO05D006194 3.3e-40 168.3 112 83.9
Glyma.15G139900 Glycine max HOM05D005046 ORTHO05D006194 3.3e-40 168.3 112 82.1
CsaV3_6G028590 Cucumis sativus L. HOM05D005046 ORTHO05D006194 5.7e-40 167.5 112 83.0
Phvul.003G114500 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 7.4e-40 167.2 112 82.1
VMungo1215G0235 Vigna mungo HOM05D005046 ORTHO05D006194 7.4e-40 167.2 112 82.1
Lalb_Chr18g0058661 Lupinus albus HOM05D005046 ORTHO05D006194 9.7e-40 166.8 112 83.0
MD13G1153200 Malus domestica HOM05D005046 ORTHO05D006194 1.3e-39 166.4 112 83.0
MD16G1153600 Malus domestica HOM05D005046 ORTHO05D006194 1.3e-39 166.4 108 84.3
Potri.010G146100 Populus trichocarpa HOM05D005046 ORTHO05D006194 1.3e-39 166.4 113 84.1
Sabra10G0112600 Salix brachista HOM05D005046 ORTHO05D006194 1.3e-39 166.4 111 84.7
MELO3C021266.2 Cucumis melo HOM05D005046 ORTHO05D006194 2.2e-39 165.6 112 82.1
Prupe.1G116800 Prunus persica HOM05D005046 ORTHO05D006194 2.2e-39 165.6 112 83.0
Lj6g0015111 Lotus japonicus HOM05D005046 ORTHO05D006194 2.8e-39 165.2 112 79.5
Manes.15G000300 Manihot esculenta HOM05D005046 ORTHO05D006194 2.8e-39 165.2 112 81.2
Solyc12g099240.2 Solanum lycopersicum HOM05D005046 ORTHO05D006194 2.8e-39 165.2 112 83.9
Sopen12g033920 Solanum pennellii HOM05D005046 ORTHO05D006194 2.8e-39 165.2 112 83.9
CAN.G484.64 Capsicum annuum HOM05D005046 ORTHO05D006194 3.7e-39 164.9 112 83.0
Medtr2g034010 Medicago truncatula HOM05D005046 ORTHO05D006194 3.7e-39 164.9 112 81.2
Phvul.006G118400 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 3.7e-39 164.9 112 81.2
Sed0009015 Sechium edule HOM05D005046 ORTHO05D006194 3.7e-39 164.9 110 81.8
VMungo0540G1157 Vigna mungo HOM05D005046 ORTHO05D006194 3.7e-39 164.9 112 81.2
Peaxi162Scf00228g00326 Petunia axillaris HOM05D005046 ORTHO05D006194 4.8e-39 164.5 112 83.9
PGSC0003DMG400004620 Solanum tuberosum HOM05D005046 ORTHO05D006194 4.8e-39 164.5 112 82.1
CANSAT78G2375 Cannabis sativa HOM05D005046 ORTHO05D006194 6.3e-39 164.1 110 83.6
Rhsim02G0003600 Rhododendron simsii HOM05D005046 ORTHO05D006194 6.3e-39 164.1 108 82.4
Ciclev10006264m.g Citrus clementina HOM05D005046 ORTHO05D006194 8.2e-39 163.7 113 81.4
QL05p065557 Quercus lobata HOM05D005046 ORTHO05D006194 8.2e-39 163.7 107 83.2
Rhsim04G0239300 Rhododendron simsii HOM05D005046 ORTHO05D006194 8.2e-39 163.7 112 80.4
TPR.G13743 Trifolium pratense HOM05D005046 ORTHO05D006194 8.2e-39 163.7 112 80.4
TWI73G0015 Tripterygium wilfordii HOM05D005046 ORTHO05D006194 8.2e-39 163.7 112 79.5
Sed0022816 Sechium edule HOM05D005046 ORTHO05D006194 1.1e-38 163.3 112 82.1
Psat1g160840 Pisum sativum HOM05D005046 ORTHO05D006194 2.4e-38 162.2 112 80.4
vmacro08042 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 2.4e-38 162.2 109 81.7
Cfa015310 Carpinus fangiana HOM05D005046 ORTHO05D006194 3.1e-38 161.8 108 83.3
Migut.G00065 Erythranthe guttata HOM05D005046 ORTHO05D006194 3.1e-38 161.8 110 81.8
SGA_v2.0_scaffold104G30073 Striga asiatica HOM05D005046 ORTHO05D006194 3.1e-38 161.8 110 80.9
arahy.Tifrunner.gnm1.ann1.4F0N5D Arachis hypogaea HOM05D005046 ORTHO05D006194 4.1e-38 161.4 112 78.6
arahy.Tifrunner.gnm1.ann1.KUZ2VC Arachis hypogaea HOM05D005046 ORTHO05D006194 4.1e-38 161.4 112 78.6
Ca_00977_v3 Cicer arietinum L. HOM05D005046 ORTHO05D006194 5.3e-38 161.0 112 78.6
COL.COLO4_34610 Corchorus olitorius HOM05D005046 ORTHO05D006194 5.3e-38 161.0 112 80.4
ATR0693G376 Amborella trichopoda HOM05D005046 ORTHO05D006194 9.1e-38 160.2 112 81.2
PGR004G2877 Punica granatum HOM05D005046 ORTHO05D006194 9.1e-38 160.2 108 81.5
Duzib212G1042 Durio zibethinus HOM05D005046 ORTHO05D006194 1.5e-37 159.5 112 79.5
Gohir.D01G023544 Gossypium hirsutum HOM05D005046 ORTHO05D006194 1.5e-37 159.5 112 79.5
Gorai.002G030300 Gossypium raimondii HOM05D005046 ORTHO05D006194 1.5e-37 159.5 112 79.5
Glyma.09G035300 Glycine max HOM05D005046 ORTHO05D006194 2.6e-37 158.7 112 78.6
MSTRG.10153 Avicennia marina HOM05D005046 ORTHO05D006194 4.5e-37 157.9 110 79.1
Eucgr.H04047 Eucalyptus grandis HOM05D005046 ORTHO05D006194 4.5e-37 157.9 108 81.5
Oeu001169.1 Olea europaea HOM05D005046 ORTHO05D006194 4.5e-37 157.9 109 81.7
Pp3c15_12430 Physcomitrium patens HOM05D005046 ORTHO05D006194 4.5e-37 157.9 110 77.3
Gohir.A01G034600 Gossypium hirsutum HOM05D005046 ORTHO05D006194 5.9e-37 157.5 112 78.6
MBI18_g37558_MAGBIO Magnolia biondii HOM05D005046 ORTHO05D006194 5.9e-37 157.5 134 70.1
FvH4_4g19820 Fragaria vesca HOM05D005046 ORTHO05D006194 7.7e-37 157.1 108 80.6
FAN07G0875 Fragaria x ananassa HOM05D005046 ORTHO05D006194 7.7e-37 157.1 108 80.6
FAN12G2964 Fragaria x ananassa HOM05D005046 ORTHO05D006194 7.7e-37 157.1 108 80.6
Nitab4.5_0000403g0120 Nicotiana tabacum HOM05D005046 ORTHO05D006194 7.7e-37 157.1 112 78.6
RcHm_v2.0_Chr4g0425361 Rosa chinensis HOM05D005046 ORTHO05D006194 7.7e-37 157.1 108 80.6
ClCG06G004560 Citrullus lanatus HOM05D005046 ORTHO05D006194 1.0e-36 156.8 128 71.9
Gorai.005G067500 Gossypium raimondii HOM05D005046 ORTHO05D006194 1.0e-36 156.8 112 78.6
Duzib052G0826 Durio zibethinus HOM05D005046 ORTHO05D006194 1.3e-36 156.4 112 78.6
Gohir.A02G054900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 1.3e-36 156.4 112 78.6
Actinidia18456 Actinidia chinensis HOM05D005046 ORTHO05D006194 1.7e-36 156.0 112 77.7
Actinidia40381 Actinidia chinensis HOM05D005046 ORTHO05D006194 1.7e-36 156.0 112 77.7
CiPaw.01G138200 Carya illinoinensis HOM05D005046 ORTHO05D006194 1.7e-36 156.0 112 78.6
CiPaw.02G074700 Carya illinoinensis HOM05D005046 ORTHO05D006194 2.2e-36 155.6 112 76.8
Thecc.04G301400 Theobroma cacao HOM05D005046 ORTHO05D006194 2.2e-36 155.6 112 77.7
MSTRG.24823 Avicennia marina HOM05D005046 ORTHO05D006194 2.9e-36 155.2 112 76.8
Zm00001eb211320 Zea mays HOM05D005046 ORTHO05D006194 3.8e-36 154.8 99 83.8
SalBow5G2652 Salvia bowleyana HOM05D005046 ORTHO05D006194 5.0e-36 154.5 110 76.4
HPP92_016092 Vanilla planifolia HOM05D005046 ORTHO05D006194 6.5e-36 154.1 107 78.5
Os03g0832300 Oryza sativa ssp. japonica HOM05D005046 ORTHO05D006194 3.2e-35 151.8 99 81.8
Haze_01302 Corylus avellana HOM05D005046 ORTHO05D006194 5.5e-35 151.0 108 80.6
THA.LOC104805014 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 7.2e-35 150.6 111 78.4
Actinidia13356 Actinidia chinensis HOM05D005046 ORTHO05D006194 1.2e-34 149.8 100 84.0
CAN.G158.24 Capsicum annuum HOM05D005046 ORTHO05D006194 2.1e-34 149.1 112 75.0
unitig_749.g13361 Utricularia gibba HOM05D005046 ORTHO05D006194 4.7e-34 147.9 106 72.6
Thhalv10021793m.g Eutrema salsugineum HOM05D005046 ORTHO05D006194 6.1e-34 147.5 110 74.5
Aa31LG5G17170 Aethionema arabicum HOM05D005046 ORTHO05D006194 7.9e-34 147.1 110 74.5
Sp3g05540 Schrenkiella parvula HOM05D005046 ORTHO05D006194 1.8e-33 146.0 110 72.7
BNapus_Darmor_BZH_scaffold_118p00040 Brassica napus HOM05D005046 ORTHO05D006194 2.3e-33 145.6 110 72.7
Potri.008G105000 Populus trichocarpa HOM05D005046 ORTHO05D006194 2.3e-33 145.6 107 77.6
A05p41430 Brassica napus HOM05D005046 ORTHO05D006194 3.9e-33 144.8 110 71.8
C05p60640 Brassica napus HOM05D005046 ORTHO05D006194 3.9e-33 144.8 110 71.8
BolC5t34723H Brassica oleracea HOM05D005046 ORTHO05D006194 3.9e-33 144.8 110 71.8
BraA05t22864Z Brassica rapa HOM05D005046 ORTHO05D006194 3.9e-33 144.8 110 71.8
AT3G06610 Arabidopsis thaliana HOM05D005046 ORTHO05D006194 5.1e-33 144.4 110 72.7
BraA01t04428Z Brassica rapa HOM05D005046 ORTHO05D006194 5.1e-33 144.4 110 71.8
CARHR081150 Cardamine hirsuta HOM05D005046 ORTHO05D006194 5.1e-33 144.4 110 72.7
THA.LOC104818881 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 5.1e-33 144.4 111 74.8
Carub.0003s0607 Capsella rubella HOM05D005046 ORTHO05D006194 6.7e-33 144.1 110 72.7
Sabra08G0079200 Salix brachista HOM05D005046 ORTHO05D006194 6.7e-33 144.1 113 77.9
Hund11979 Selenicereus undatus HOM05D005046 ORTHO05D006194 6.7e-33 144.1 112 75.0
AagrBONN_evm.TU.Sc2ySwM_368.969 Anthoceros agrestis HOM05D005046 ORTHO05D006194 1.5e-32 142.9 97 77.3
BolC1t05599H Brassica oleracea HOM05D005046 ORTHO05D006194 4.4e-32 141.4 110 70.9
BcaC05g30546 Brassica carinata HOM05D005046 ORTHO05D006194 5.7e-32 141.0 111 72.1
ECA240G2346 Erigeron canadensis HOM05D005046 ORTHO05D006194 7.4e-32 140.6 98 77.6
AL3G17660 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 9.7e-32 140.2 110 70.9
Sc25g0003240 Simmondsia chinensis HOM05D005046 ORTHO05D006194 2.2e-31 139.0 112 72.3
Ah.13g071840 Amaranthus hybridus HOM05D005046 ORTHO05D006194 3.7e-31 138.3 112 71.4
Nitab4.5_0000496g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 6.3e-31 137.5 112 70.5
AUR62016211 Chenopodium quinoa HOM05D005046 ORTHO05D006194 8.2e-31 137.1 114 71.9
SMO304G0028 Selaginella moellendorffii HOM05D005046 ORTHO05D006194 8.2e-31 137.1 97 74.2
vmacro15180 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 1.8e-30 136.0 175 50.9
EL10Ac3g05511 Beta vulgaris HOM05D005046 ORTHO05D006194 3.1e-30 135.2 112 71.4
AUR62039277 Chenopodium quinoa HOM05D005046 ORTHO05D006194 1.2e-29 133.3 112 69.6
Mapoly0010s0169 Marchantia polymorpha HOM05D005046 ORTHO05D006194 1.0e-28 130.2 109 65.1
Nitab4.5_0002150g0070 Nicotiana tabacum HOM05D005046 ORTHO05D006194 1.3e-28 129.8 112 68.8
AagrBONN_evm.TU.Sc2ySwM_368.976 Anthoceros agrestis HOM05D005046 ORTHO05D006194 5.0e-28 127.9 85 78.8
CBR_g51449 Chara braunii HOM05D005046 ORTHO05D006194 9.4e-27 123.6 96 67.7
Nitab4.5_0002294g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 9.4e-27 123.6 112 67.0
Cc03_g00760 Coffea canephora HOM05D005046 ORTHO05D006194 7.4e-24 114.0 81 81.5
Manes.03G205301 Manihot esculenta HOM05D005046 ORTHO05D006194 1.3e-23 113.2 111 61.3
Gohir.D02G059900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 7.7e-21 104.0 68 80.9
BcaC09g47907 Brassica carinata HOM05D005046 ORTHO05D006194 1.3e-20 103.2 110 55.5
TAR365G1002 Trochodendron aralioides HOM05D005046 ORTHO05D006194 2.7e-18 95.5 63 82.5
DCAR_026983 Daucus carota HOM05D005046 ORTHO05D006194 8.8e-17 90.5 61 82.0
Atru.chr4.2994 Acer truncatum HOM05D005046 ORTHO05D006194 6.3e-15 84.3 53 79.2
Eucgr.J02724 Eucalyptus grandis HOM05D005046 ORTHO05D006194 4.1e-14 81.6 50 82.0
RcHm_v2.0_Chr5g0023271 Rosa chinensis HOM05D005046 ORTHO05D006194 2.7e-13 79.0 62 71.0
SEGI_33495 Sequoiadendron giganteum HOM05D005046 ORTHO05D006194 1.7e-12 76.3 58 72.4
Lj5g0009192 Lotus japonicus HOM05D005046 ORTHO05D006194 2.5e-11 72.4 93 51.6
AL3G18870 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 4.2e-11 71.6 62 66.1
Atru.chr4.2993 Acer truncatum HOM05D005046 ORTHO05D006194 5.5e-11 71.2 45 88.9
Lj1g0019312 Lotus japonicus HOM05D005046 ORTHO05D006194 1.2e-10 70.1 67 59.7
Cre01.g041000 Chlamydomonas reinhardtii HOM05D005046 ORTHO05D006194 2.8e-07 58.9 103 41.7


User provided reference genes

Program Settings