Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G3608 Papaver somniferum HOM05D000748 ORTHO05D000394 6.7e-54 213.8 109 100.0
PSO832G2785 Papaver somniferum HOM05D000748 ORTHO05D000394 1.0e-38 163.3 87 97.7
TAR629G2208 Trochodendron aralioides HOM05D000748 ORTHO05D000394 1.5e-21 106.3 87 65.5
Atru.chr6.2996 Acer truncatum HOM05D000748 ORTHO05D000394 8.3e-20 100.5 123 45.5
arahy.Tifrunner.gnm1.ann1.BEAG7X Arachis hypogaea HOM05D000748 ORTHO05D000394 4.1e-19 98.2 87 58.6
Dinv23641 Davidia involucrata HOM05D000748 ORTHO05D000394 7.0e-19 97.4 87 58.6
Actinidia11035 Actinidia chinensis HOM05D000748 ORTHO05D000394 1.2e-18 96.7 108 46.3
Sabra19G0110700 Salix brachista HOM05D000748 ORTHO05D000394 1.6e-18 96.3 87 57.5
Sabra19G0112100 Salix brachista HOM05D000748 ORTHO05D000394 1.6e-18 96.3 87 57.5
arahy.Tifrunner.gnm1.ann1.UQN5NZ Arachis hypogaea HOM05D000748 ORTHO05D000394 2.0e-18 95.9 87 57.5
GSVIVG01020544001 Vitis vinifera HOM05D000748 ORTHO05D000394 5.9e-18 94.4 88 59.1
TAR624G1116 Trochodendron aralioides HOM05D000748 ORTHO05D000394 7.8e-18 94.0 87 58.6
CiPaw.03G177000 Carya illinoinensis HOM05D000748 ORTHO05D000394 1.0e-17 93.6 87 56.3
Duzib106G1717 Durio zibethinus HOM05D000748 ORTHO05D000394 1.0e-17 93.6 87 55.2
Sabra13G0111200 Salix brachista HOM05D000748 ORTHO05D000394 1.0e-17 93.6 87 57.5
Eucgr.K01023 Eucalyptus grandis HOM05D000748 ORTHO05D000394 1.3e-17 93.2 87 56.3
Lj3g0007355 Lotus japonicus HOM05D000748 ORTHO05D000394 1.3e-17 93.2 87 54.0
Manes.12G089370 Manihot esculenta HOM05D000748 ORTHO05D000394 1.3e-17 93.2 87 55.2
Medtr0004s0210 Medicago truncatula HOM05D000748 ORTHO05D000394 1.7e-17 92.8 87 51.7
Potri.013G131700 Populus trichocarpa HOM05D000748 ORTHO05D000394 1.7e-17 92.8 87 55.2
QL08p038716 Quercus lobata HOM05D000748 ORTHO05D000394 1.7e-17 92.8 87 56.3
Glyma.12G113100 Glycine max HOM05D000748 ORTHO05D000394 3.8e-17 91.7 87 51.7
Psat7g189720 Pisum sativum HOM05D000748 ORTHO05D000394 3.8e-17 91.7 87 52.9
CANSAT80G2769 Cannabis sativa HOM05D000748 ORTHO05D000394 5.0e-17 91.3 87 55.2
Glyma.07G196300 Glycine max HOM05D000748 ORTHO05D000394 1.1e-16 90.1 87 54.0
Peaxi162Scf00059g01920 Petunia axillaris HOM05D000748 ORTHO05D000394 1.5e-16 89.7 86 51.2
Prupe.3G137700 Prunus persica HOM05D000748 ORTHO05D000394 1.5e-16 89.7 87 52.9
Hma1.2p1_0002F.1_g001860 Hydrangea macrophylla HOM05D000748 ORTHO05D000394 1.9e-16 89.4 87 55.2
Hma1.2p1_0002F.1_g001870 Hydrangea macrophylla HOM05D000748 ORTHO05D000394 1.9e-16 89.4 87 55.2
Hma1.2p1_1201F.1_g266543 Hydrangea macrophylla HOM05D000748 ORTHO05D000394 1.9e-16 89.4 87 55.2
Dinv26417 Davidia involucrata HOM05D000748 ORTHO05D000394 4.3e-16 88.2 87 54.0
Sc21g0002840 Simmondsia chinensis HOM05D000748 ORTHO05D000394 4.3e-16 88.2 87 52.9
Thecc.02G179400 Theobroma cacao HOM05D000748 ORTHO05D000394 4.3e-16 88.2 87 52.9
MELO3C018737.2 Cucumis melo HOM05D000748 ORTHO05D000394 7.3e-16 87.4 87 51.7
CsaV3_7G004420 Cucumis sativus L. HOM05D000748 ORTHO05D000394 7.3e-16 87.4 87 51.7
ClCG07G002920 Citrullus lanatus HOM05D000748 ORTHO05D000394 9.5e-16 87.0 87 52.9
Gohir.A09G216900 Gossypium hirsutum HOM05D000748 ORTHO05D000394 9.5e-16 87.0 86 54.7
COL.COLO4_30183 Corchorus olitorius HOM05D000748 ORTHO05D000394 1.2e-15 86.7 87 50.6
Gohir.D09G219300 Gossypium hirsutum HOM05D000748 ORTHO05D000394 1.2e-15 86.7 86 54.7
Gorai.006G240300 Gossypium raimondii HOM05D000748 ORTHO05D000394 1.2e-15 86.7 86 54.7
Sed0012708 Sechium edule HOM05D000748 ORTHO05D000394 1.2e-15 86.7 87 49.4
Haze_13159 Corylus avellana HOM05D000748 ORTHO05D000394 1.6e-15 86.3 87 54.0
Potri.019G100300 Populus trichocarpa HOM05D000748 ORTHO05D000394 1.6e-15 86.3 88 53.4
VMungo1127G0579 Vigna mungo HOM05D000748 ORTHO05D000394 1.6e-15 86.3 87 48.3
FAN21G1875 Fragaria x ananassa HOM05D000748 ORTHO05D000394 2.1e-15 85.9 87 46.0
Actinidia23687 Actinidia chinensis HOM05D000748 ORTHO05D000394 2.8e-15 85.5 87 51.7
Aqoxy1G02433 Aquilegia oxysepala HOM05D000748 ORTHO05D000394 2.8e-15 85.5 87 52.9
Phvul.011G114000 Phaseolus vulgaris HOM05D000748 ORTHO05D000394 3.6e-15 85.1 87 48.3
QL05p040228 Quercus lobata HOM05D000748 ORTHO05D000394 3.6e-15 85.1 87 52.9
Rhsim06G0142200 Rhododendron simsii HOM05D000748 ORTHO05D000394 3.6e-15 85.1 108 42.6
FvH4_3g09260 Fragaria vesca HOM05D000748 ORTHO05D000394 4.7e-15 84.7 87 47.1
FAN16G1836 Fragaria x ananassa HOM05D000748 ORTHO05D000394 4.7e-15 84.7 87 46.0
Hma1.2p1_0126F.1_g059420 Hydrangea macrophylla HOM05D000748 ORTHO05D000394 6.1e-15 84.3 85 52.9
Sc12g0003060 Simmondsia chinensis HOM05D000748 ORTHO05D000394 6.1e-15 84.3 108 42.6
Actinidia07583 Actinidia chinensis HOM05D000748 ORTHO05D000394 8.0e-15 84.0 87 51.7
Cpa.g.sc34.161 Carica papaya HOM05D000748 ORTHO05D000394 8.0e-15 84.0 87 48.3
Duzib235G0591 Durio zibethinus HOM05D000748 ORTHO05D000394 8.0e-15 84.0 87 52.9
Glyma.06G292900 Glycine max HOM05D000748 ORTHO05D000394 8.0e-15 84.0 87 48.3
Lj1A1206T66 Lonicera japonica HOM05D000748 ORTHO05D000394 1.0e-14 83.6 87 49.4
Lalb_Chr16g0383731 Lupinus albus HOM05D000748 ORTHO05D000394 1.0e-14 83.6 87 47.1
MD17G1240500 Malus domestica HOM05D000748 ORTHO05D000394 1.0e-14 83.6 88 50.0
Cfa014614 Carpinus fangiana HOM05D000748 ORTHO05D000394 1.4e-14 83.2 87 51.7
FAN11G2697 Fragaria x ananassa HOM05D000748 ORTHO05D000394 1.4e-14 83.2 82 48.8
Phvul.002G234000 Phaseolus vulgaris HOM05D000748 ORTHO05D000394 1.4e-14 83.2 87 51.7
RcHm_v2.0_Chr5g0008311 Rosa chinensis HOM05D000748 ORTHO05D000394 1.4e-14 83.2 87 46.0
VMungo0251G0082 Vigna mungo HOM05D000748 ORTHO05D000394 1.4e-14 83.2 87 50.6
Gohir.A05G161800 Gossypium hirsutum HOM05D000748 ORTHO05D000394 2.3e-14 82.4 88 53.4
Gohir.D05G164600 Gossypium hirsutum HOM05D000748 ORTHO05D000394 2.3e-14 82.4 88 52.3
Gorai.009G169800 Gossypium raimondii HOM05D000748 ORTHO05D000394 2.3e-14 82.4 88 52.3
Lalb_Chr03g0029451 Lupinus albus HOM05D000748 ORTHO05D000394 5.2e-14 81.3 87 48.3
CSS0009741 Camellia sinensis var. sinensis HOM05D000748 ORTHO05D000394 6.8e-14 80.9 87 49.4
Dinv40554 Davidia involucrata HOM05D000748 ORTHO05D000394 6.8e-14 80.9 87 49.4
Glyma.14G196000 Glycine max HOM05D000748 ORTHO05D000394 6.8e-14 80.9 87 42.5
TWI36G1695 Tripterygium wilfordii HOM05D000748 ORTHO05D000394 8.9e-14 80.5 86 52.3
Lj4g0017866 Lotus japonicus HOM05D000748 ORTHO05D000394 1.2e-13 80.1 87 48.3
MD09G1247600 Malus domestica HOM05D000748 ORTHO05D000394 1.2e-13 80.1 88 47.7
Peaxi162Scf00661g00521 Petunia axillaris HOM05D000748 ORTHO05D000394 1.2e-13 80.1 87 46.0
Thecc.06G188200 Theobroma cacao HOM05D000748 ORTHO05D000394 1.2e-13 80.1 87 49.4
PGSC0003DMG400029690 Solanum tuberosum HOM05D000748 ORTHO05D000394 1.5e-13 79.7 87 47.1
vmacro12302 Vaccinium macrocarpon HOM05D000748 ORTHO05D000394 1.5e-13 79.7 108 43.5
COL.COLO4_31477 Corchorus olitorius HOM05D003185 ORTHO05D009915 2.6e-13 79.0 87 49.4
MBI07_g32534_MAGBIO Magnolia biondii HOM05D000748 ORTHO05D000394 2.6e-13 79.0 87 50.6
Prupe.4G046800 Prunus persica HOM05D000748 ORTHO05D000394 2.6e-13 79.0 87 48.3
TWI63G0527 Tripterygium wilfordii HOM05D000748 ORTHO05D000394 3.4e-13 78.6 87 47.1
Migut.M01144 Erythranthe guttata HOM05D000748 ORTHO05D000394 4.4e-13 78.2 77 53.2
Nitab4.5_0003432g0060 Nicotiana tabacum HOM05D000748 ORTHO05D000394 4.4e-13 78.2 87 46.0
Nitab4.5_0010762g0030 Nicotiana tabacum HOM05D000748 ORTHO05D000394 4.4e-13 78.2 87 46.0
Atru.chr10.1886 Acer truncatum HOM05D000748 ORTHO05D000394 9.8e-13 77.0 87 47.1
PGR004G1146 Punica granatum HOM05D000748 ORTHO05D000394 9.8e-13 77.0 85 45.9
Sopen02g023110 Solanum pennellii HOM05D000748 ORTHO05D000394 9.8e-13 77.0 87 46.0
PGR142G2985 Punica granatum HOM05D000748 ORTHO05D000394 1.3e-12 76.6 82 50.0
MSTRG.15887 Avicennia marina HOM05D000748 ORTHO05D000394 1.7e-12 76.3 77 46.8
Manes.16G027200 Manihot esculenta HOM05D000748 ORTHO05D000394 1.7e-12 76.3 81 48.1
Rhsim02G0129000 Rhododendron simsii HOM05D000748 ORTHO05D000394 1.7e-12 76.3 87 47.1
Potri.011G052100 Populus trichocarpa HOM05D000748 ORTHO05D000394 2.2e-12 75.9 87 48.3
Hund21225 Selenicereus undatus HOM05D000748 ORTHO05D000394 2.9e-12 75.5 86 48.8
vmacro15905 Vaccinium macrocarpon HOM05D000748 ORTHO05D000394 2.9e-12 75.5 87 44.8
Peaxi162Scf00530g00117 Petunia axillaris HOM05D000748 ORTHO05D000394 4.9e-12 74.7 87 48.3
SalBow8G4396 Salvia bowleyana HOM05D003185 ORTHO05D009915 1.1e-11 73.6 78 48.7
SGA_v2.0_scaffold159G37643 Striga asiatica HOM05D000748 ORTHO05D000394 1.1e-11 73.6 77 45.5
SalBow8G0734 Salvia bowleyana HOM05D003185 ORTHO05D009915 1.4e-11 73.2 78 48.7
arahy.Tifrunner.gnm1.ann1.KKMV3J Arachis hypogaea HOM05D000748 ORTHO05D000394 1.9e-11 72.8 85 47.1
MD05G1313000 Malus domestica HOM05D000748 ORTHO05D000394 2.4e-11 72.4 87 43.7
CiPaw.10G048100 Carya illinoinensis HOM05D000748 ORTHO05D000394 3.2e-11 72.0 81 49.4
CANSAT35G1994 Cannabis sativa HOM05D000748 ORTHO05D000394 4.1e-11 71.6 87 41.4
Sabra11G0035800 Salix brachista HOM05D000748 ORTHO05D000394 4.1e-11 71.6 87 47.1
EL10Ac8g20380 Beta vulgaris HOM05D000748 ORTHO05D000394 5.4e-11 71.2 87 46.0
Carub.0006s3353 Capsella rubella HOM05D000748 ORTHO05D000394 5.4e-11 71.2 78 46.2
DCAR_013008 Daucus carota HOM05D003471 ORTHO05D004079 9.2e-11 70.5 78 51.3
DCAR_028069 Daucus carota HOM05D000748 ORTHO05D000394 1.2e-10 70.1 77 45.5
Oeu053972.1 Olea europaea HOM05D000748 ORTHO05D000394 1.2e-10 70.1 87 43.7
SalBow7G2481 Salvia bowleyana HOM05D000748 ORTHO05D000394 1.2e-10 70.1 88 39.8
AUR62017014 Chenopodium quinoa HOM05D000748 ORTHO05D000394 2.0e-10 69.3 73 49.3
MD10G1295200 Malus domestica HOM05D000748 ORTHO05D000394 2.0e-10 69.3 87 40.2
Migut.H01488 Erythranthe guttata HOM05D000748 ORTHO05D000394 2.7e-10 68.9 87 41.4
Gorai.005G222200 Gossypium raimondii HOM05D000748 ORTHO05D000394 2.7e-10 68.9 60 58.3
MBI07_g12790_MAGBIO Magnolia biondii HOM05D000748 ORTHO05D000394 2.7e-10 68.9 68 52.9
AT4G03540 Arabidopsis thaliana HOM05D000748 ORTHO05D000394 3.5e-10 68.6 78 47.4
Gohir.D02G198525 Gossypium hirsutum HOM05D000748 ORTHO05D000394 3.5e-10 68.6 60 58.3
A09p02820 Brassica napus HOM05D000748 ORTHO05D000394 4.6e-10 68.2 88 44.3
C09p02900 Brassica napus HOM05D000748 ORTHO05D000394 4.6e-10 68.2 88 44.3
BolC9t53215H Brassica oleracea HOM05D000748 ORTHO05D000394 4.6e-10 68.2 88 44.3
BraA09t35923Z Brassica rapa HOM05D000748 ORTHO05D000394 4.6e-10 68.2 88 44.3
Cc02_g13330 Coffea canephora HOM05D000748 ORTHO05D000394 4.6e-10 68.2 87 43.7
Hma1.2p1_0785F.1_g217550 Hydrangea macrophylla HOM05D000748 ORTHO05D000394 4.6e-10 68.2 61 55.7
BcaB01g01904 Brassica carinata HOM05D000748 ORTHO05D000394 1.0e-09 67.0 78 44.9
Thhalv10029027m.g Eutrema salsugineum HOM05D000748 ORTHO05D000394 1.0e-09 67.0 78 44.9
AL6G49360 Arabidopsis lyrata HOM05D000748 ORTHO05D000394 1.3e-09 66.6 78 44.9
Potri.004G043300 Populus trichocarpa HOM05D000748 ORTHO05D000394 1.7e-09 66.2 87 43.7
Nn1g06561 Nelumbo nucifera HOM05D000748 ORTHO05D000394 2.3e-09 65.9 87 40.2
HanXRQChr04g0124291 Helianthus annuus HOM05D000748 ORTHO05D000394 3.0e-09 65.5 76 44.7
Aa31LG5G2920 Aethionema arabicum HOM05D000748 ORTHO05D000394 3.9e-09 65.1 77 46.8
Sp6g03550 Schrenkiella parvula HOM05D000748 ORTHO05D000394 3.9e-09 65.1 78 43.6
HPP92_003877 Vanilla planifolia HOM05D000748 ORTHO05D000394 5.0e-09 64.7 87 41.4
C05p02080 Brassica napus HOM05D004201 ORTHO05D012052 6.6e-09 64.3 103 38.8
CARHR251970 Cardamine hirsuta HOM05D000748 ORTHO05D000394 1.1e-08 63.5 77 44.2
Lsat_1_v5_gn_7_21240 Lactuca sativa HOM05D000748 ORTHO05D000394 1.1e-08 63.5 87 42.5
BcaC05g24515 Brassica carinata HOM05D004201 ORTHO05D012052 1.9e-08 62.8 103 37.9
HPP92_003887 Vanilla planifolia HOM05D000748 ORTHO05D000394 2.5e-08 62.4 87 39.1
Eucgr.D00625 Eucalyptus grandis HOM05D000748 ORTHO05D000394 4.3e-08 61.6 78 48.7
Thhalv10009824m.g Eutrema salsugineum HOM05D000748 ORTHO05D000394 5.6e-08 61.2 87 41.4
THA.LOC104815961 Tarenaya hassleriana HOM05D000748 ORTHO05D000394 5.6e-08 61.2 63 46.0
AL1G13190 Arabidopsis lyrata HOM05D000748 ORTHO05D000394 7.3e-08 60.8 82 43.9
AT1G03700 Arabidopsis thaliana HOM05D000748 ORTHO05D000394 7.3e-08 60.8 82 43.9
BcaB02g06910 Brassica carinata HOM05D000748 ORTHO05D000394 9.5e-08 60.5 82 42.7
A10p02200 Brassica napus HOM05D000748 ORTHO05D000394 9.5e-08 60.5 82 42.7
BraA10t42488Z Brassica rapa HOM05D000748 ORTHO05D000394 9.5e-08 60.5 82 42.7
ECA236G1279 Erigeron canadensis HOM05D000748 ORTHO05D000394 9.5e-08 60.5 69 47.8
Nn1g04081 Nelumbo nucifera HOM05D000748 ORTHO05D000394 9.5e-08 60.5 87 37.9
Carub.0001s0280 Capsella rubella HOM05D000748 ORTHO05D000394 1.2e-07 60.1 82 42.7
Sp1g02580 Schrenkiella parvula HOM05D000748 ORTHO05D000394 1.2e-07 60.1 82 42.7
Aa31LG1G21000 Aethionema arabicum HOM05D000748 ORTHO05D000394 1.6e-07 59.7 68 48.5
AUR62014819 Chenopodium quinoa HOM05D000748 ORTHO05D000394 1.6e-07 59.7 61 49.2
CARHR003030 Cardamine hirsuta HOM05D000748 ORTHO05D000394 2.1e-07 59.3 82 42.7
BolC5t28984H Brassica oleracea HOM05D000748 ORTHO05D000394 2.8e-07 58.9 82 41.5
Solyc02g078250.4 Solanum lycopersicum HOM05D000748 ORTHO05D000394 2.8e-07 58.9 61 47.5
Nitab4.5_0001825g0030 Nicotiana tabacum HOM05D003184 ORTHO05D000394 6.2e-07 57.8 74 45.9
Nitab4.5_0000033g0210 Nicotiana tabacum HOM05D003184 ORTHO05D000394 1.1e-06 57.0 64 45.3
Os05g0245300 Oryza sativa ssp. japonica HOM05D000748 ORTHO05D000394 1.4e-06 56.6 87 39.1
TPR.G27502 Trifolium pratense HOM05D000748 ORTHO05D000394 1.4e-06 56.6 56 44.6
Nitab4.5_0017715g0010 Nicotiana tabacum HOM05D003184 ORTHO05D000394 3.1e-06 55.5 62 43.5
Dinv11214 Davidia involucrata HOM05D003184 ORTHO05D000394 4.0e-06 55.1 72 43.1
Solyc06g072550.3 Solanum lycopersicum HOM05D003184 ORTHO05D000394 5.2e-06 54.7 64 42.2
Sopen06g028910 Solanum pennellii HOM05D003184 ORTHO05D000394 5.2e-06 54.7 64 42.2
Os01g0237000 Oryza sativa ssp. japonica HOM05D000748 ORTHO05D000394 8.9e-06 53.9 87 37.9
Solyc06g072530.3 Solanum lycopersicum HOM05D003184 ORTHO05D000394 8.9e-06 53.9 64 43.8
Sopen06g028900 Solanum pennellii HOM05D003184 ORTHO05D000394 8.9e-06 53.9 64 43.8
PGSC0003DMG400026945 Solanum tuberosum HOM05D003184 ORTHO05D000394 8.9e-06 53.9 64 45.3
Zm00001eb347520 Zea mays HOM05D000748 ORTHO05D000394 8.9e-06 53.9 87 36.8


User provided reference genes

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