Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G3536 Papaver somniferum HOM05D004234 ORTHO05D004670 2.1e-247 858.6 435 100.0
PSO238G0034 Papaver somniferum HOM05D004234 ORTHO05D004670 2.8e-236 821.6 456 92.8
Aqoxy5G04150 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 2.3e-166 589.3 453 70.0
Aqoxy1G01638 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 8.9e-166 587.4 453 69.8
Nn6g33942 Nelumbo nucifera HOM05D004234 ORTHO05D004670 3.2e-163 578.9 454 68.9
GSVIVG01014047001 Vitis vinifera HOM05D004234 ORTHO05D004670 5.4e-163 578.2 451 68.1
Dinv06568 Davidia involucrata HOM05D004234 ORTHO05D004670 6.0e-162 574.7 458 68.1
TAR636G1879 Trochodendron aralioides HOM05D004234 ORTHO05D004670 3.4e-157 558.9 449 67.9
CSS0018772 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 5.8e-157 558.1 452 67.7
Hma1.2p1_0432F.1_g151850 Hydrangea macrophylla HOM05D004234 ORTHO05D004670 5.8e-157 558.1 466 67.0
QL09p005405 Quercus lobata HOM05D004234 ORTHO05D004670 1.3e-156 557.0 454 65.9
Actinidia31776 Actinidia chinensis HOM05D004234 ORTHO05D004670 1.7e-153 546.6 459 65.6
Actinidia13581 Actinidia chinensis HOM05D004234 ORTHO05D004670 2.4e-150 536.2 451 65.4
TWI39G0359 Tripterygium wilfordii HOM05D004234 ORTHO05D004670 5.3e-150 535.0 431 67.5
ATR0317G048 Amborella trichopoda HOM05D004234 ORTHO05D004670 1.2e-149 533.9 460 64.6
Thecc.03G153900 Theobroma cacao HOM05D004234 ORTHO05D004670 1.2e-149 533.9 443 66.6
DCAR_014620 Daucus carota HOM05D004234 ORTHO05D004670 5.8e-149 531.6 460 64.3
Lj1A979T78 Lonicera japonica HOM05D004234 ORTHO05D004670 2.2e-148 529.6 430 66.3
PGR042G3222 Punica granatum HOM05D004234 ORTHO05D004670 6.4e-148 528.1 462 63.2
CsaV3_3G050070 Cucumis sativus L. HOM05D004234 ORTHO05D004670 9.3e-147 524.2 470 61.9
Sopen03g024080 Solanum pennellii HOM05D004234 ORTHO05D004670 1.2e-146 523.9 446 63.2
MD01G1182200 Malus domestica HOM05D004234 ORTHO05D004670 1.6e-146 523.5 424 65.8
HPP92_020352 Vanilla planifolia HOM05D004234 ORTHO05D004670 1.6e-146 523.5 445 64.5
Glyma.09G229600 Glycine max HOM05D004234 ORTHO05D004670 2.1e-146 523.1 439 65.1
Sed0010040 Sechium edule HOM05D004234 ORTHO05D004670 2.1e-146 523.1 427 65.3
Manes.06G133800 Manihot esculenta HOM05D004234 ORTHO05D004670 2.7e-146 522.7 460 63.0
RcHm_v2.0_Chr1g0331961 Rosa chinensis HOM05D004234 ORTHO05D004670 2.7e-146 522.7 440 65.9
Ciclev10004769m.g Citrus clementina HOM05D004234 ORTHO05D004670 1.0e-145 520.8 455 62.0
MD07G1252500 Malus domestica HOM05D004234 ORTHO05D004670 1.0e-145 520.8 428 65.9
HanXRQChr05g0142531 Helianthus annuus HOM05D004234 ORTHO05D004670 1.3e-145 520.4 453 63.8
Phvul.011G007500 Phaseolus vulgaris HOM05D004234 ORTHO05D004670 1.3e-145 520.4 446 62.8
Solyc03g093300.3 Solanum lycopersicum HOM05D004234 ORTHO05D004670 1.3e-145 520.4 446 63.0
arahy.Tifrunner.gnm1.ann1.WXBJ4D Arachis hypogaea HOM05D004234 ORTHO05D004670 5.1e-145 518.5 434 64.7
Gohir.A03G059300 Gossypium hirsutum HOM05D004234 ORTHO05D004670 5.1e-145 518.5 456 64.0
ECA233G5771 Erigeron canadensis HOM05D004234 ORTHO05D004670 1.1e-144 517.3 442 65.4
ClCG09G013080 Citrullus lanatus HOM05D004234 ORTHO05D004670 1.5e-144 516.9 445 64.3
COL.COLO4_14105 Corchorus olitorius HOM05D004234 ORTHO05D004670 1.9e-144 516.5 445 64.7
VMungo1127G0923 Vigna mungo HOM05D004234 ORTHO05D004670 1.9e-144 516.5 446 61.9
arahy.Tifrunner.gnm1.ann1.11333K Arachis hypogaea HOM05D004234 ORTHO05D004670 2.5e-144 516.2 437 64.5
Medtr4g036835 Medicago truncatula HOM05D004234 ORTHO05D004670 4.3e-144 515.4 451 63.0
SalBow8G0184 Salvia bowleyana HOM05D004234 ORTHO05D004670 7.3e-144 514.6 467 62.1
SalBow8G4519 Salvia bowleyana HOM05D004234 ORTHO05D004670 7.3e-144 514.6 467 62.1
Potri.001G125700 Populus trichocarpa HOM05D004234 ORTHO05D004670 9.6e-144 514.2 468 63.2
Nn1g00980 Nelumbo nucifera HOM05D004234 ORTHO05D004670 1.3e-143 513.8 447 64.2
Lalb_Chr01g0000341 Lupinus albus HOM05D004234 ORTHO05D004670 4.8e-143 511.9 454 62.6
Sabra03G0074900 Salix brachista HOM05D004234 ORTHO05D004670 1.4e-142 510.4 446 65.0
Gohir.D03G106600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.8e-142 510.0 456 63.2
Duzib084G1335 Durio zibethinus HOM05D004234 ORTHO05D004670 4.0e-142 508.8 439 64.7
Oeu028187.2 Olea europaea HOM05D004234 ORTHO05D004670 4.0e-142 508.8 454 61.5
Prupe.2G276000 Prunus persica HOM05D004234 ORTHO05D004670 4.0e-142 508.8 467 61.9
AUR62015488 Chenopodium quinoa HOM05D004234 ORTHO05D004670 5.3e-142 508.4 495 59.0
Psat7g159560 Pisum sativum HOM05D004234 ORTHO05D004670 1.2e-141 507.3 460 61.3
Sc19g0002070 Simmondsia chinensis HOM05D004234 ORTHO05D004670 3.4e-141 505.8 440 63.9
Peaxi162Scf00241g00030 Petunia axillaris HOM05D004234 ORTHO05D004670 4.5e-141 505.4 476 59.0
Potri.003G108000 Populus trichocarpa HOM05D004234 ORTHO05D004670 7.6e-141 504.6 459 63.6
Sed0020354 Sechium edule HOM05D004234 ORTHO05D004670 3.8e-140 502.3 455 61.3
Migut.F00484 Erythranthe guttata HOM05D004234 ORTHO05D004670 6.4e-140 501.5 419 65.2
FvH4_7g05310 Fragaria vesca HOM05D004234 ORTHO05D004670 1.1e-139 500.7 412 67.5
FAN03G3162 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.1e-139 500.7 412 67.5
Eucgr.H04780 Eucalyptus grandis HOM05D004234 ORTHO05D004670 5.4e-139 498.4 455 62.0
FAN10G4258 Fragaria x ananassa HOM05D004234 ORTHO05D004670 7.1e-139 498.0 412 67.0
Atru.chr1.756 Acer truncatum HOM05D004234 ORTHO05D004670 1.2e-138 497.3 462 61.3
Gorai.003G113100 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.2e-138 497.3 437 64.1
Nitab4.5_0002816g0120 Nicotiana tabacum HOM05D004234 ORTHO05D004670 2.7e-138 496.1 447 61.5
Zm00001eb404400 Zea mays HOM05D004234 ORTHO05D004670 2.7e-138 496.1 439 63.1
MELO3C003311.2 Cucumis melo HOM05D004234 ORTHO05D004670 4.6e-138 495.4 511 55.8
Lj3g0001566 Lotus japonicus HOM05D004234 ORTHO05D004670 4.6e-138 495.4 451 61.4
unitig_46.g18765 Utricularia gibba HOM05D004234 ORTHO05D004670 6.7e-137 491.5 446 62.1
Rhsim09G0190900 Rhododendron simsii HOM05D004234 ORTHO05D004670 1.9e-136 490.0 578 51.7
Os03g0102400 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 3.3e-136 489.2 421 63.2
Lsat_1_v5_gn_1_117561 Lactuca sativa HOM05D004234 ORTHO05D004670 4.3e-136 488.8 452 61.5
SGA_v2.0_scaffold2G01218 Striga asiatica HOM05D004234 ORTHO05D004670 8.1e-135 484.6 478 59.8
AT5G61450 Arabidopsis thaliana HOM05D004234 ORTHO05D004670 1.4e-134 483.8 430 60.9
Cc02_g04370 Coffea canephora HOM05D004234 ORTHO05D004670 1.4e-134 483.8 424 63.0
Thhalv10004229m.g Eutrema salsugineum HOM05D004234 ORTHO05D004670 1.5e-133 480.3 439 60.8
Glyma.12G006700 Glycine max HOM05D004234 ORTHO05D004670 1.5e-133 480.3 440 61.4
Gohir.A12G198000 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.5e-133 480.3 441 60.3
Gohir.D12G200600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 2.6e-133 479.6 425 61.6
Gorai.008G215700 Gossypium raimondii HOM05D004234 ORTHO05D004670 2.6e-133 479.6 425 61.6
Carub.0008s2213 Capsella rubella HOM05D004234 ORTHO05D004670 3.4e-133 479.2 440 61.1
Os07g0466200 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 4.5e-133 478.8 414 63.5
Hund11832 Selenicereus undatus HOM05D004234 ORTHO05D004670 4.5e-133 478.8 434 62.2
Ca_25531_v3 Cicer arietinum L. HOM05D004234 ORTHO05D004670 1.3e-132 477.2 445 60.0
AL8G38140 Arabidopsis lyrata HOM05D004234 ORTHO05D004670 1.9e-131 473.4 434 60.6
A03p47040 Brassica napus HOM05D004234 ORTHO05D004670 3.2e-131 472.6 441 59.0
BraA03t13827Z Brassica rapa HOM05D004234 ORTHO05D004670 3.2e-131 472.6 441 59.0
C07p45120 Brassica napus HOM05D004234 ORTHO05D004670 5.5e-131 471.9 441 59.2
Prupe.2G276100 Prunus persica HOM05D004234 ORTHO05D004670 1.2e-130 470.7 411 61.8
EL10Ac3g05852 Beta vulgaris HOM05D004234 ORTHO05D004670 1.6e-130 470.3 453 58.1
BcaC06g33234 Brassica carinata HOM05D004234 ORTHO05D004670 2.1e-130 469.9 441 59.0
Sp2g24650 Schrenkiella parvula HOM05D004234 ORTHO05D004670 2.1e-130 469.9 437 60.6
BolC7t45034H Brassica oleracea HOM05D004234 ORTHO05D004670 4.6e-130 468.8 442 58.4
Ah.07g207720 Amaranthus hybridus HOM05D004234 ORTHO05D004670 1.3e-127 460.7 476 56.9
BcaC06g33149 Brassica carinata HOM05D004234 ORTHO05D004670 3.1e-126 456.1 440 58.0
Lsat_1_v5_gn_9_51980 Lactuca sativa HOM05D004234 ORTHO05D004670 7.1e-123 444.9 467 56.7
Mapoly0072s0015 Marchantia polymorpha HOM05D004234 ORTHO05D004670 1.8e-121 440.3 513 49.3
Aa31LG11G1950 Aethionema arabicum HOM05D004234 ORTHO05D004670 1.9e-120 436.8 442 56.3
Nitab4.5_0003490g0020 Nicotiana tabacum HOM05D004234 ORTHO05D004670 5.7e-120 435.3 413 59.3
FAN01G2714 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.3e-119 434.1 391 63.4
MD07G1252600 Malus domestica HOM05D004234 ORTHO05D004670 2.8e-119 433.0 400 60.2
Pp3c17_11550 Physcomitrium patens HOM05D004234 ORTHO05D004670 1.2e-117 427.6 432 54.6
Pp3c2_13380 Physcomitrium patens HOM05D004234 ORTHO05D004670 2.2e-116 423.3 418 56.9
RcHm_v2.0_Chr1g0374151 Rosa chinensis HOM05D004234 ORTHO05D004670 3.8e-116 422.5 408 55.9
Lsat_1_v5_gn_8_8740 Lactuca sativa HOM05D004234 ORTHO05D004670 4.2e-115 419.1 479 53.2
FvH4_7g27310 Fragaria vesca HOM05D004234 ORTHO05D004670 7.2e-115 418.3 409 55.7
Medtr1g056720 Medicago truncatula HOM05D004234 ORTHO05D004670 3.6e-114 416.0 374 60.7
FAN06G0557 Fragaria x ananassa HOM05D004234 ORTHO05D004670 4.6e-114 415.6 409 55.5
AagrBONN_evm.TU.Sc2ySwM_117.258 Anthoceros agrestis HOM05D004234 ORTHO05D004670 1.8e-113 413.7 465 53.5
Pp3c14_12080 Physcomitrium patens HOM05D004234 ORTHO05D004670 2.3e-113 413.3 411 56.0
AUR62002211 Chenopodium quinoa HOM05D004234 ORTHO05D004670 3.3e-112 409.5 392 58.7
CiPaw.04G059200 Carya illinoinensis HOM05D004234 ORTHO05D004670 2.9e-108 396.4 333 65.8
Lj8A43G57 Lonicera japonica HOM05D004234 ORTHO05D004670 1.6e-106 390.6 370 59.7
Duzib205G0275 Durio zibethinus HOM05D004234 ORTHO05D004670 7.9e-106 388.3 412 57.0
Lsat_1_v5_gn_1_117520 Lactuca sativa HOM05D004234 ORTHO05D004670 2.3e-105 386.7 468 50.6
CAN.G48.41 Capsicum annuum HOM05D004234 ORTHO05D004670 2.0e-104 383.6 412 54.1
Peaxi162Scf00304g01343 Petunia axillaris HOM05D004234 ORTHO05D004670 5.7e-104 382.1 379 56.7
Nitab4.5_0000262g0110 Nicotiana tabacum HOM05D004234 ORTHO05D004670 9.7e-104 381.3 413 54.2
FAN03G0204 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.7e-103 380.6 421 51.1
SMO357G0012 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 4.1e-102 375.9 430 50.5
FAN06G1565 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.2e-98 364.4 373 54.2
FAN10G3280 Fragaria x ananassa HOM05D002503 ORTHO05D004670 7.0e-94 348.6 378 52.6
CAN.G330.4 Capsicum annuum HOM05D004234 ORTHO05D004670 1.2e-93 347.8 363 52.6
FAN03G2107 Fragaria x ananassa HOM05D002503 ORTHO05D004670 7.7e-93 345.1 378 51.9
C07p40880 Brassica napus HOM05D004234 ORTHO05D004670 1.5e-88 330.9 388 50.5
BolC7t44614H Brassica oleracea HOM05D004234 ORTHO05D004670 4.4e-88 329.3 383 50.1
PGSC0003DMG400021593 Solanum tuberosum HOM05D004234 ORTHO05D004670 2.5e-83 313.5 351 51.3
CBR_g12525 Chara braunii HOM05D004234 ORTHO05D004670 3.7e-79 299.7 584 37.7
FAN10G1071 Fragaria x ananassa HOM05D004234 ORTHO05D004670 3.7e-79 299.7 407 45.0
BcaNung02453 Brassica carinata HOM05D004234 ORTHO05D004670 1.7e-76 290.8 356 47.8
CARHR275210 Cardamine hirsuta HOM05D004234 ORTHO05D004670 4.2e-75 286.2 275 57.8
Solyc06g034180.2 Solanum lycopersicum HOM05D004234 ORTHO05D004670 2.9e-71 273.5 337 49.0
SMO203G0101 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 1.2e-69 268.1 319 48.0
Sabra01G0096800 Salix brachista HOM05D004234 ORTHO05D004670 5.6e-67 259.2 295 52.9
Nitab4.5_0000448g0090 Nicotiana tabacum HOM05D004234 ORTHO05D004670 8.0e-66 255.4 313 47.6
arahy.Tifrunner.gnm1.ann1.EHKS3S Arachis hypogaea HOM05D004234 ORTHO05D004670 5.4e-62 242.7 328 47.3
Lsat_1_v5_gn_1_117540 Lactuca sativa HOM05D004234 ORTHO05D004670 2.5e-51 207.2 306 42.5
Haze_13877 Corylus avellana HOM05D004234 ORTHO05D004670 4.1e-46 189.9 205 52.2
Sopen06g015930 Solanum pennellii HOM05D004234 ORTHO05D000001 2.1e-45 187.6 240 47.1
vmacro09913 Vaccinium macrocarpon HOM05D004234 ORTHO05D004670 2.7e-45 187.2 233 52.4
Cpa.g.sc4200.1 Carica papaya HOM05D004234 ORTHO05D004670 7.8e-45 185.7 121 76.9
CSS0026342 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 5.1e-44 183.0 130 76.9
SHI13981 Sapria himalayana HOM05D004234 ORTHO05D004670 1.5e-43 181.4 244 45.5
Cpa.g.c29748.2 Carica papaya HOM05D004234 ORTHO05D004670 4.8e-34 149.8 98 82.7
Cre03.g201000 Chlamydomonas reinhardtii HOM05D004234 ORTHO05D004670 2.6e-32 144.1 157 49.0
arahy.Tifrunner.gnm1.ann1.J8KP6L Arachis hypogaea HOM05D004234 ORTHO05D004670 3.8e-31 140.2 138 58.7
FvH4_2g12100 Fragaria vesca HOM05D004234 ORTHO05D004670 1.0e-28 132.1 108 64.8
arahy.Tifrunner.gnm1.ann1.AYL6ZU Arachis hypogaea HOM05D004234 ORTHO05D004670 6.6e-28 129.4 139 57.6
FvH4_c2g00051 Fragaria vesca HOM05D004234 ORTHO05D004670 1.8e-25 121.3 111 64.0
BolC1t03363H Brassica oleracea HOM05D004234 ORTHO05D004670 6.9e-25 119.4 74 74.3
arahy.Tifrunner.gnm1.ann1.F7NEP8 Arachis hypogaea HOM05D004234 ORTHO05D004670 2.6e-24 117.5 105 65.7
SEGI_04441 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 1.4e-22 111.7 66 86.4
FvH4_3g27272 Fragaria vesca HOM05D004234 ORTHO05D004670 1.2e-21 108.6 104 61.5
SEGI_33806 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 2.7e-21 107.5 71 69.0
Dinv16843 Davidia involucrata HOM05D004234 ORTHO05D004670 6.0e-21 106.3 69 73.9
Haze_13878 Corylus avellana HOM05D004234 ORTHO05D004670 1.6e-18 98.2 76 67.1
Migut.L01142 Erythranthe guttata HOM05D004234 ORTHO05D004670 2.4e-17 94.4 94 52.1
Gorai.011G181500 Gossypium raimondii HOM05D001733 ORTHO05D004670 4.0e-17 93.6 51 84.3
FvH4_5g28373 Fragaria vesca HOM05D004234 ORTHO05D004670 1.7e-15 88.2 145 44.8
Gorai.009G415200 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.7e-15 88.2 51 82.4
Cpa.g.sc111.54 Carica papaya HOM05D004234 ORTHO05D004670 6.5e-15 86.3 150 40.0
Gorai.012G056500 Gossypium raimondii HOM05D004234 ORTHO05D004670 8.4e-15 85.9 51 80.4
SEGI_09779 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 1.4e-14 85.1 72 61.1
Actinidia24997 Actinidia chinensis HOM05D004234 ORTHO05D004670 1.9e-14 84.7 78 64.1
Lsat_1_v5_gn_5_94641 Lactuca sativa HOM05D004234 ORTHO05D004670 1.9e-14 84.7 76 55.3
Gohir.D04G050932 Gossypium hirsutum HOM05D004234 ORTHO05D004670 2.5e-14 84.3 55 74.5
Gohir.D11G243650 Gossypium hirsutum HOM05D001733 ORTHO05D004670 1.3e-12 78.6 51 74.5
Peaxi162Scf00304g01326 Petunia axillaris HOM05D004234 ORTHO05D004670 1.4e-09 68.6 84 54.8
PRCOL_00000881 Prasinoderma coloniale HOM05D004234 ORTHO05D004670 2.4e-09 67.8 81 54.3
Nitab4.5_0003490g0040 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.5e-08 65.1 41 70.7
Rhsim06G0134300 Rhododendron simsii HOM05D000157 ORTHO05D000311 3.4e-08 63.9 36 88.9
CDE02G0679 Ceratophyllum demersum HOM05D042044 ORTHO05D004670 2.5e-06 57.8 65 50.8
SEGI_30601 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 9.3e-06 55.8 58 51.7


User provided reference genes

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