Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G3353 Papaver somniferum HOM05D006834 ORTHO05D008623 6.4e-233 810.4 431 100.0
PSO761G0283 Papaver somniferum HOM05D006834 ORTHO05D008623 7.4e-221 770.4 431 96.1
TAR636G0448 Trochodendron aralioides HOM05D006834 ORTHO05D008623 4.1e-139 498.8 430 64.4
MBI18_g03845_MAGBIO Magnolia biondii HOM05D006834 ORTHO05D008623 9.2e-139 497.7 433 63.3
Nn4g25303 Nelumbo nucifera HOM05D006834 ORTHO05D008623 5.4e-131 471.9 437 60.9
Aqoxy2G02436 Aquilegia oxysepala HOM05D006834 ORTHO05D008623 2.7e-130 469.5 431 61.0
Atru.chr5.848 Acer truncatum HOM05D006834 ORTHO05D008623 6.6e-121 438.3 429 56.6
CSS0011680 Camellia sinensis var. sinensis HOM05D006834 ORTHO05D008623 6.6e-121 438.3 399 58.6
Dinv12076 Davidia involucrata HOM05D006834 ORTHO05D008623 4.3e-120 435.6 430 57.0
Sabra02G0148600 Salix brachista HOM05D006834 ORTHO05D008623 1.1e-118 431.0 425 55.1
QL12p035081 Quercus lobata HOM05D006834 ORTHO05D008623 1.8e-118 430.3 434 56.0
QL12p035100 Quercus lobata HOM05D006834 ORTHO05D008623 1.8e-118 430.3 434 56.0
Thecc.01G326600 Theobroma cacao HOM05D006834 ORTHO05D008623 4.4e-117 425.6 433 54.0
Cpa.g.sc57.31 Carica papaya HOM05D006834 ORTHO05D008623 1.3e-116 424.1 425 55.3
PGR042G0322 Punica granatum HOM05D006834 ORTHO05D008623 1.3e-116 424.1 424 58.0
vmacro15952 Vaccinium macrocarpon HOM05D006834 ORTHO05D008623 1.3e-116 424.1 403 56.6
GSVIVG01028237001 Vitis vinifera HOM05D006834 ORTHO05D008623 1.3e-116 424.1 442 55.0
TWI59G0932 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 1.1e-115 421.0 436 53.4
Potri.002G186100 Populus trichocarpa HOM05D006834 ORTHO05D008623 3.2e-115 419.5 425 53.6
TWI14G0919 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 7.1e-115 418.3 426 54.2
Actinidia21334 Actinidia chinensis HOM05D006834 ORTHO05D008623 2.1e-114 416.8 438 51.8
Ciclev10020225m.g Citrus clementina HOM05D006834 ORTHO05D008623 2.1e-114 416.8 424 54.0
Gohir.A12G119200 Gossypium hirsutum HOM05D006834 ORTHO05D008623 3.5e-114 416.0 436 52.3
CiPaw.08G082000 Carya illinoinensis HOM05D006834 ORTHO05D008623 1.3e-113 414.1 439 54.7
Cfa004921 Carpinus fangiana HOM05D006834 ORTHO05D008623 1.5e-112 410.6 437 53.8
Gorai.008G133900 Gossypium raimondii HOM05D006834 ORTHO05D008623 1.5e-112 410.6 436 52.3
Duzib138G0585 Durio zibethinus HOM05D006834 ORTHO05D008623 5.6e-112 408.7 434 52.1
Psat3g017400 Pisum sativum HOM05D006834 ORTHO05D008623 2.8e-111 406.4 410 54.1
Aa31LG10G16050 Aethionema arabicum HOM05D006834 ORTHO05D008623 1.1e-110 404.4 432 53.2
A09p54180 Brassica napus HOM05D006834 ORTHO05D008623 1.4e-110 404.1 405 55.1
C08p37040 Brassica napus HOM05D006834 ORTHO05D008623 1.4e-110 404.1 406 55.4
Rhsim01G0000800 Rhododendron simsii HOM05D006834 ORTHO05D008623 1.8e-110 403.7 403 54.6
Lalb_Chr18g0046351 Lupinus albus HOM05D006834 ORTHO05D008623 1.5e-109 400.6 415 53.0
BraA09t40830Z Brassica rapa HOM05D006834 ORTHO05D008623 2.6e-109 399.8 404 55.2
Phvul.001G218900 Phaseolus vulgaris HOM05D006834 ORTHO05D008623 3.4e-109 399.4 426 52.3
BolC8t51281H Brassica oleracea HOM05D006834 ORTHO05D008623 4.5e-109 399.1 432 53.5
TPR.G8370 Trifolium pratense HOM05D006834 ORTHO05D008623 7.6e-109 398.3 425 51.5
ATR0796G131 Amborella trichopoda HOM05D006834 ORTHO05D008623 9.9e-109 397.9 375 55.7
Lj1g0008019 Lotus japonicus HOM05D006834 ORTHO05D008623 9.9e-109 397.9 434 51.2
CARHR172420 Cardamine hirsuta HOM05D006834 ORTHO05D008623 1.3e-108 397.5 431 52.7
Medtr7g110820 Medicago truncatula HOM05D006834 ORTHO05D008623 1.7e-108 397.1 427 51.3
Eucgr.A00997 Eucalyptus grandis HOM05D006834 ORTHO05D008623 4.9e-108 395.6 424 54.0
VMungo1383G1632 Vigna mungo HOM05D006834 ORTHO05D008623 1.4e-107 394.0 423 51.8
AT3G62080 Arabidopsis thaliana HOM05D006834 ORTHO05D008623 1.9e-107 393.7 429 52.0
Sp5g01290 Schrenkiella parvula HOM05D006834 ORTHO05D008623 2.4e-107 393.3 432 52.5
Glyma.19G222100 Glycine max HOM05D006834 ORTHO05D008623 9.3e-107 391.3 396 53.8
CsaV3_5G017580 Cucumis sativus L. HOM05D006834 ORTHO05D008623 4.6e-106 389.0 368 55.2
AL5G44760 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 6.0e-106 388.7 431 51.5
Haze_05159 Corylus avellana HOM05D006834 ORTHO05D008623 7.9e-106 388.3 429 52.7
PGSC0003DMG401001116 Solanum tuberosum HOM05D006834 ORTHO05D008623 2.3e-105 386.7 376 54.3
Thhalv10005996m.g Eutrema salsugineum HOM05D006834 ORTHO05D008623 3.9e-105 386.0 402 53.0
CANSAT25G0194 Cannabis sativa HOM05D006834 ORTHO05D008623 5.1e-105 385.6 437 51.9
AL5G44880 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 4.3e-104 382.5 405 52.1
ClCG01G007130 Citrullus lanatus HOM05D006834 ORTHO05D008623 7.4e-104 381.7 425 50.4
MD09G1291400 Malus domestica HOM05D006834 ORTHO05D008623 2.8e-103 379.8 431 51.0
Carub.0005s2883 Capsella rubella HOM05D006834 ORTHO05D008623 4.8e-103 379.0 395 52.9
Nitab4.5_0007915g0010 Nicotiana tabacum HOM05D006834 ORTHO05D008623 2.4e-102 376.7 378 52.9
CAN.G179.29 Capsicum annuum HOM05D006834 ORTHO05D008623 3.1e-102 376.3 373 53.9
HanXRQChr06g0167961 Helianthus annuus HOM05D006834 ORTHO05D008623 3.1e-102 376.3 428 51.4
MELO3C005199.2 Cucumis melo HOM05D006834 ORTHO05D008623 4.0e-102 375.9 368 53.3
Sopen01g030580 Solanum pennellii HOM05D006834 ORTHO05D008623 5.3e-102 375.6 402 52.0
BcaC07g40700 Brassica carinata HOM05D006834 ORTHO05D008623 6.9e-102 375.2 432 52.1
Cc01_g21740 Coffea canephora HOM05D006834 ORTHO05D008623 6.9e-102 375.2 434 47.7
Nitab4.5_0003092g0080 Nicotiana tabacum HOM05D006834 ORTHO05D008623 4.5e-101 372.5 378 52.6
Sed0016094 Sechium edule HOM05D006834 ORTHO05D008623 4.5e-101 372.5 401 50.4
THA.LOC104817424 Tarenaya hassleriana HOM05D006834 ORTHO05D008623 1.1e-96 357.8 429 49.0
AUR62032606 Chenopodium quinoa HOM05D006834 ORTHO05D008623 2.5e-96 356.7 426 47.7
Oeu008276.1 Olea europaea HOM05D006834 ORTHO05D008623 5.7e-96 355.5 457 46.0
FAN19G1238 Fragaria x ananassa HOM05D006834 ORTHO05D008623 1.3e-95 354.4 414 47.3
Lsat_1_v5_gn_8_167261 Lactuca sativa HOM05D006834 ORTHO05D008623 1.3e-95 354.4 410 47.6
AUR62001071 Chenopodium quinoa HOM05D006834 ORTHO05D008623 3.7e-95 352.8 369 51.5
FvH4_1g26150 Fragaria vesca HOM05D006834 ORTHO05D008623 8.2e-95 351.7 414 47.3
FAN23G1444 Fragaria x ananassa HOM05D006834 ORTHO05D008623 9.0e-94 348.2 430 47.0
arahy.Tifrunner.gnm1.ann1.AJ9Z2K Arachis hypogaea HOM05D006834 ORTHO05D008623 2.0e-93 347.1 372 49.7
RcHm_v2.0_Chr3g0485641 Rosa chinensis HOM05D006834 ORTHO05D008623 2.0e-93 347.1 357 52.9
FAN26G0527 Fragaria x ananassa HOM05D006834 ORTHO05D008623 3.4e-93 346.3 433 46.2
CDE01G0777 Ceratophyllum demersum HOM05D006834 ORTHO05D008623 2.1e-90 337.0 370 51.9
arahy.Tifrunner.gnm1.ann1.W0LIHS Arachis hypogaea HOM05D006834 ORTHO05D008623 3.5e-90 336.3 398 47.0
Ca_09251_v3 Cicer arietinum L. HOM05D006834 ORTHO05D008623 1.1e-88 331.3 302 56.6
ECA236G2058 Erigeron canadensis HOM05D006834 ORTHO05D007803 1.9e-88 330.5 363 49.9
SGA_v2.0_scaffold310G48195 Striga asiatica HOM05D006834 ORTHO05D008623 5.7e-88 328.9 381 48.6
Migut.D01683 Erythranthe guttata HOM05D006834 ORTHO05D008623 9.7e-88 328.2 418 47.4
Ah.12g061380 Amaranthus hybridus HOM05D006834 ORTHO05D008623 1.6e-87 327.4 367 49.3
Manes.05G007900 Manihot esculenta HOM05D006834 ORTHO05D008623 1.5e-85 320.9 344 53.8
EL10Ac9g22392 Beta vulgaris HOM05D006834 ORTHO05D008623 2.2e-84 317.0 379 45.9
MSTRG.21731 Avicennia marina HOM05D006834 ORTHO05D008623 2.9e-84 316.6 426 44.4
COL.COLO4_23116 Corchorus olitorius HOM05D006834 ORTHO05D008623 2.4e-78 297.0 350 50.9
DCAR_012294 Daucus carota HOM05D006834 ORTHO05D008623 3.8e-76 289.7 273 54.9
Prupe.3G001500 Prunus persica HOM05D006834 ORTHO05D008623 7.4e-72 275.4 341 49.6
Pp3c3_29200 Physcomitrium patens HOM05D006834 ORTHO05D008623 9.7e-72 275.0 449 36.5
Gohir.D12G123000 Gossypium hirsutum HOM05D006834 ORTHO05D008623 6.3e-71 272.3 340 47.9
Os01g0286000 Oryza sativa ssp. japonica HOM05D006834 ORTHO05D008623 1.1e-70 271.6 418 41.1
Mapoly0053s0040 Marchantia polymorpha HOM05D006834 ORTHO05D008623 5.3e-70 269.2 412 36.7
Zm00001eb129510 Zea mays HOM05D006834 ORTHO05D008623 7.7e-69 265.4 376 43.4
AUR62031719 Chenopodium quinoa HOM05D006834 ORTHO05D008623 2.7e-66 256.9 369 43.4
Hma1.2p1_0408F.1_g146240 Hydrangea macrophylla HOM05D006834 ORTHO05D008623 5.2e-65 252.7 287 51.6
SMO339G0071 Selaginella moellendorffii HOM05D006834 ORTHO05D008623 1.3e-60 238.0 386 37.6
HPP92_001172 Vanilla planifolia HOM05D006834 ORTHO05D008623 8.0e-58 228.8 255 50.6
Sc05g0000050 Simmondsia chinensis HOM05D006834 ORTHO05D008623 3.5e-53 213.4 202 52.0
Solyc01g079060.4 Solanum lycopersicum HOM05D006834 ORTHO05D008623 2.2e-52 210.7 198 52.0
Peaxi162Scf00309g00622 Petunia axillaris HOM05D006834 ORTHO05D008623 1.1e-38 165.2 181 53.6
Peaxi162Scf00309g00627 Petunia axillaris HOM05D006834 ORTHO05D008623 8.9e-33 145.6 198 42.9
Hma1.2p1_1735F.1_g299880 Hydrangea macrophylla HOM05D006834 ORTHO05D008623 9.5e-27 125.6 85 68.2
MELO3C028884.2 Cucumis melo HOM05D006834 ORTHO05D008623 7.3e-19 99.4 121 44.6
MELO3C033776.2 Cucumis melo HOM05D006834 ORTHO05D008623 2.6e-16 90.9 65 60.0
MELO3C005268.2 Cucumis melo HOM05D006834 ORTHO05D008623 1.1e-14 85.5 64 60.9
MELO3C032404.2 Cucumis melo HOM05D006834 ORTHO05D008623 3.2e-14 84.0 56 62.5
CBR_g12374 Chara braunii HOM05D006834 ORTHO05D008623 2.3e-12 77.8 275 29.5
HPP92_010139 Vanilla planifolia HOM05D006834 ORTHO05D008623 5.1e-12 76.6 107 45.8
MSTRG.6034 Avicennia marina HOM05D001726 ORTHO05D001761 2.2e-07 61.2 177 27.1
MELO3C029443.2 Cucumis melo HOM05D006834 ORTHO05D008623 2.2e-07 61.2 35 74.3
HPP92_003022 Vanilla planifolia HOM05D001726 ORTHO05D001761 2.9e-07 60.8 212 24.5
CSS0015579 Camellia sinensis var. sinensis HOM05D001726 ORTHO05D001761 1.1e-06 58.9 185 25.9
MSTRG.26400 Avicennia marina HOM05D001726 ORTHO05D001761 1.4e-06 58.5 180 25.6
MD08G1074600 Malus domestica HOM05D001726 ORTHO05D001761 1.4e-06 58.5 175 29.1
Sc05g0000060 Simmondsia chinensis HOM05D006834 ORTHO05D008623 7.1e-06 56.2 91 34.1


User provided reference genes

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