Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G3347 Papaver somniferum HOM05D005770 ORTHO05D006702 1.1e-159 567.4 285 100.0
PSO832G0287 Papaver somniferum HOM05D005770 ORTHO05D006702 1.8e-157 560.1 285 98.6
PSO210G6232 Papaver somniferum HOM05D005770 ORTHO05D006702 1.4e-58 231.5 287 46.7
PSO832G4086 Papaver somniferum HOM05D005770 ORTHO05D006702 1.4e-58 231.5 287 46.7
MBI17_g21973_MAGBIO Magnolia biondii HOM05D005770 ORTHO05D006702 8.4e-51 205.7 221 49.3
TAR367G0010 Trochodendron aralioides HOM05D005770 ORTHO05D006702 1.1e-50 205.3 289 43.6
Aqoxy2G04147 Aquilegia oxysepala HOM05D005770 ORTHO05D006702 1.3e-48 198.4 270 43.3
Duzib205G0262 Durio zibethinus HOM05D005770 ORTHO05D006702 3.0e-48 197.2 260 46.2
QL09p014180 Quercus lobata HOM05D005770 ORTHO05D006702 3.9e-48 196.8 243 45.7
Cfa021839 Carpinus fangiana HOM05D005770 ORTHO05D006702 1.9e-47 194.5 239 46.9
Haze_13705 Corylus avellana HOM05D005770 ORTHO05D006702 1.9e-47 194.5 209 49.3
CiPaw.03G106500 Carya illinoinensis HOM05D005770 ORTHO05D006702 2.5e-47 194.1 234 46.6
Thecc.03G176800 Theobroma cacao HOM05D005770 ORTHO05D006702 9.6e-47 192.2 183 54.1
CiPaw.04G071100 Carya illinoinensis HOM05D005770 ORTHO05D006702 1.6e-46 191.4 236 44.9
Prupe.2G294500 Prunus persica HOM05D005770 ORTHO05D006702 1.6e-46 191.4 193 50.8
Hma1.2p1_1438F.1_g283370 Hydrangea macrophylla HOM05D005770 ORTHO05D006702 2.1e-46 191.0 227 44.9
CSS0038653 Camellia sinensis var. sinensis HOM05D005770 ORTHO05D006702 3.7e-46 190.3 223 46.2
Aqoxy2G04148 Aquilegia oxysepala HOM05D005770 ORTHO05D006702 4.8e-46 189.9 256 43.4
CSS0016459 Camellia sinensis var. sinensis HOM05D005770 ORTHO05D006702 6.2e-46 189.5 224 46.9
COL.COLO4_14311 Corchorus olitorius HOM05D005770 ORTHO05D006702 6.2e-46 189.5 206 49.0
MD01G1201100 Malus domestica HOM05D005770 ORTHO05D006702 8.2e-46 189.1 286 41.3
Cpa.g.sc107.54 Carica papaya HOM05D005770 ORTHO05D006702 1.1e-45 188.7 232 46.1
Duzib084G0816 Durio zibethinus HOM05D005770 ORTHO05D006702 1.2e-44 185.3 224 46.4
CANSAT21G1021 Cannabis sativa HOM05D005770 ORTHO05D006702 1.5e-44 184.9 254 40.9
Ca_10769_v3 Cicer arietinum L. HOM05D005770 ORTHO05D006702 2.6e-44 184.1 222 46.4
Eucgr.A02787 Eucalyptus grandis HOM05D005770 ORTHO05D006702 5.8e-44 183.0 286 41.6
Dinv35212 Davidia involucrata HOM05D001888 ORTHO05D001842 7.6e-44 182.6 223 45.7
vmacro06680 Vaccinium macrocarpon HOM05D005770 ORTHO05D006702 7.6e-44 182.6 209 45.5
PGSC0003DMG400022513 Solanum tuberosum HOM05D005770 ORTHO05D006702 1.0e-43 182.2 194 50.0
Lalb_Chr01g0009311 Lupinus albus HOM05D005770 ORTHO05D006702 1.3e-43 181.8 226 44.7
Nitab4.5_0005729g0100 Nicotiana tabacum HOM05D000001 ORTHO05D006702 1.3e-43 181.8 179 53.6
PGR004G2488 Punica granatum HOM05D005770 ORTHO05D006702 1.3e-43 181.8 196 48.5
Ciclev10004849m.g Citrus clementina HOM05D005770 ORTHO05D006702 1.7e-43 181.4 217 43.8
Manes.06G147400 Manihot esculenta HOM05D005770 ORTHO05D006702 2.9e-43 180.6 236 44.9
Nitab4.5_0005441g0030 Nicotiana tabacum HOM05D005770 ORTHO05D006702 2.9e-43 180.6 203 48.8
CDE02G0404 Ceratophyllum demersum HOM05D005770 ORTHO05D006702 3.8e-43 180.3 260 38.8
THA.LOC104822701 Tarenaya hassleriana HOM05D005770 ORTHO05D006702 4.9e-43 179.9 258 42.2
TAR629G1232 Trochodendron aralioides HOM05D005770 ORTHO05D006702 4.9e-43 179.9 290 40.3
GSVIVG01028975001 Vitis vinifera HOM05D005770 ORTHO05D006702 8.4e-43 179.1 222 44.6
Cc04_g11130 Coffea canephora HOM05D005770 ORTHO05D006702 1.4e-42 178.3 195 49.2
Solyc01g097730.4 Solanum lycopersicum HOM05D005770 ORTHO05D006702 1.4e-42 178.3 261 42.1
Sopen01g041340 Solanum pennellii HOM05D005770 ORTHO05D006702 1.4e-42 178.3 261 42.1
TWI23G0309 Tripterygium wilfordii HOM05D005770 ORTHO05D006702 1.4e-42 178.3 196 48.0
Carub.0001s4415 Capsella rubella HOM05D005770 ORTHO05D006702 1.9e-42 177.9 202 48.0
BcaB07g33196 Brassica carinata HOM05D005770 ORTHO05D006702 2.5e-42 177.6 193 49.2
Lalb_Chr02g0141051 Lupinus albus HOM05D005770 ORTHO05D006702 2.5e-42 177.6 247 43.3
RcHm_v2.0_Chr1g0377341 Rosa chinensis HOM05D005770 ORTHO05D006702 2.5e-42 177.6 286 40.2
Sed0026879 Sechium edule HOM05D005770 ORTHO05D006702 2.5e-42 177.6 222 43.2
Peaxi162Scf01049g00009 Petunia axillaris HOM05D005770 ORTHO05D006702 4.2e-42 176.8 194 49.0
FvH4_7g29500 Fragaria vesca HOM05D005770 ORTHO05D006702 5.5e-42 176.4 193 48.2
Potri.015G144100 Populus trichocarpa HOM05D005770 ORTHO05D006702 5.5e-42 176.4 230 43.5
Lj8C24G5 Lonicera japonica HOM05D005770 ORTHO05D006702 7.1e-42 176.0 261 40.2
MSTRG.27102 Avicennia marina HOM05D005770 ORTHO05D006702 9.3e-42 175.6 277 40.8
A06p00090 Brassica napus HOM05D005770 ORTHO05D006702 9.3e-42 175.6 227 45.4
Glyma.20G158600 Glycine max HOM05D005770 ORTHO05D006702 9.3e-42 175.6 236 42.8
CAN.G134.133 Capsicum annuum HOM05D005770 ORTHO05D006702 1.2e-41 175.3 183 50.3
FAN06G3626 Fragaria x ananassa HOM05D005770 ORTHO05D006702 1.2e-41 175.3 193 48.2
FAN06G3908 Fragaria x ananassa HOM05D005770 ORTHO05D006702 1.2e-41 175.3 193 48.2
Phvul.007G069900 Phaseolus vulgaris HOM05D005770 ORTHO05D006702 1.6e-41 174.9 239 42.7
Sabra15G0153800 Salix brachista HOM05D005770 ORTHO05D006702 1.6e-41 174.9 215 45.1
Actinidia32859 Actinidia chinensis HOM05D005770 ORTHO05D006702 2.1e-41 174.5 243 41.6
Thhalv10011441m.g Eutrema salsugineum HOM05D005770 ORTHO05D006702 2.1e-41 174.5 193 48.7
BraA06t23224Z Brassica rapa HOM05D005770 ORTHO05D006702 2.7e-41 174.1 227 44.9
CsaV3_3G017100 Cucumis sativus L. HOM05D005770 ORTHO05D006702 2.7e-41 174.1 265 40.0
DCAR_010313 Daucus carota HOM05D005770 ORTHO05D006702 2.7e-41 174.1 213 46.0
THA.LOC104815678 Tarenaya hassleriana HOM05D005770 ORTHO05D006702 2.7e-41 174.1 249 43.8
TWI39G1137 Tripterygium wilfordii HOM05D005770 ORTHO05D006702 3.5e-41 173.7 203 45.8
AL1G63710 Arabidopsis lyrata HOM05D005770 ORTHO05D006702 4.6e-41 173.3 203 46.8
FAN03G2582 Fragaria x ananassa HOM05D005770 ORTHO05D006702 4.6e-41 173.3 267 40.1
AT1G55630 Arabidopsis thaliana HOM05D005770 ORTHO05D006702 6.1e-41 172.9 212 46.2
Glyma.10G235900 Glycine max HOM05D005770 ORTHO05D006702 6.1e-41 172.9 239 41.8
Os10g0506000 Oryza sativa ssp. japonica HOM05D005770 ORTHO05D006702 6.1e-41 172.9 231 43.3
FAN01G0434 Fragaria x ananassa HOM05D005770 ORTHO05D006702 7.9e-41 172.6 267 40.1
Sp1g41250 Schrenkiella parvula HOM05D005770 ORTHO05D006702 7.9e-41 172.6 193 48.2
AL5G42240 Arabidopsis lyrata HOM05D005770 ORTHO05D006702 1.0e-40 172.2 239 43.5
Migut.F00337 Erythranthe guttata HOM05D005770 ORTHO05D006702 1.0e-40 172.2 250 42.0
Sp5g03150 Schrenkiella parvula HOM05D005770 ORTHO05D006702 1.0e-40 172.2 256 42.2
VMungo0720G2001 Vigna mungo HOM05D005770 ORTHO05D006702 1.8e-40 171.4 236 42.8
BcaC08g43641 Brassica carinata HOM05D005770 ORTHO05D006702 2.3e-40 171.0 227 44.5
C06p10600 Brassica napus HOM05D005770 ORTHO05D006702 2.3e-40 171.0 227 44.5
BolC6t36140H Brassica oleracea HOM05D005770 ORTHO05D006702 2.3e-40 171.0 227 44.5
Psat6g198600 Pisum sativum HOM05D005770 ORTHO05D006702 2.3e-40 171.0 218 44.5
Lj2g0008451 Lotus japonicus HOM05D005770 ORTHO05D006702 3.0e-40 170.6 189 47.1
Gohir.A12G257700 Gossypium hirsutum HOM05D005770 ORTHO05D006702 3.9e-40 170.2 181 48.1
Lj5g0019820 Lotus japonicus HOM05D005770 ORTHO05D006702 3.9e-40 170.2 234 41.9
Oeu056257.1 Olea europaea HOM05D005770 ORTHO05D006702 3.9e-40 170.2 205 45.9
SGA_v2.0_scaffold60G21044 Striga asiatica HOM05D005770 ORTHO05D006702 3.9e-40 170.2 238 42.4
Aa31LG10G580 Aethionema arabicum HOM05D005770 ORTHO05D006702 5.1e-40 169.9 289 39.1
arahy.Tifrunner.gnm1.ann1.FD0XM2 Arachis hypogaea HOM05D005770 ORTHO05D006702 5.1e-40 169.9 193 45.1
arahy.Tifrunner.gnm1.ann1.WS47X7 Arachis hypogaea HOM05D005770 ORTHO05D006702 5.1e-40 169.9 193 45.1
AT3G60050 Arabidopsis thaliana HOM05D005770 ORTHO05D006702 6.7e-40 169.5 180 49.4
arahy.Tifrunner.gnm1.ann1.N888CD Arachis hypogaea HOM05D005770 ORTHO05D006702 1.1e-39 168.7 245 42.0
FAN03G2589 Fragaria x ananassa HOM05D005770 ORTHO05D006702 1.5e-39 168.3 286 38.5
Sed0008807 Sechium edule HOM05D005770 ORTHO05D006702 1.9e-39 167.9 195 45.6
Gorai.008G277400 Gossypium raimondii HOM05D005770 ORTHO05D006702 2.5e-39 167.5 285 39.3
Medtr1g100593 Medicago truncatula HOM05D005770 ORTHO05D006702 2.5e-39 167.5 247 41.7
CARHR170360 Cardamine hirsuta HOM05D005770 ORTHO05D006702 3.3e-39 167.2 209 44.5
Gohir.D12G259000 Gossypium hirsutum HOM05D005770 ORTHO05D006702 3.3e-39 167.2 285 39.3
TPR.G14338 Trifolium pratense HOM05D005770 ORTHO05D006702 3.3e-39 167.2 239 43.1
Thhalv10005935m.g Eutrema salsugineum HOM05D005770 ORTHO05D006702 5.7e-39 166.4 231 43.3
ECA232G1051 Erigeron canadensis HOM05D005770 ORTHO05D006702 7.4e-39 166.0 244 41.4
Sc13g0008700 Simmondsia chinensis HOM05D005770 ORTHO05D006702 9.7e-39 165.6 213 43.7
Zm00001eb044070 Zea mays HOM05D005770 ORTHO05D006702 9.7e-39 165.6 209 44.5
HanXRQChr09g0253591 Helianthus annuus HOM05D005770 ORTHO05D006702 2.8e-38 164.1 227 41.4
CARHR045330 Cardamine hirsuta HOM05D005770 ORTHO05D006702 8.2e-38 162.5 203 44.8
ATR0594G060 Amborella trichopoda HOM05D005770 ORTHO05D006702 3.1e-37 160.6 264 36.7
DCAR_031566 Daucus carota HOM05D005770 ORTHO05D006702 3.1e-37 160.6 201 44.8
Aa31LG2G1100 Aethionema arabicum HOM05D005770 ORTHO05D006702 4.1e-37 160.2 208 42.8
HPP92_014751 Vanilla planifolia HOM05D005770 ORTHO05D006702 4.1e-37 160.2 218 39.4
Lsat_1_v5_gn_9_55961 Lactuca sativa HOM05D005770 ORTHO05D006702 2.0e-36 157.9 177 45.8
Ca_08604_v3 Cicer arietinum L. HOM05D005770 ORTHO05D006702 1.3e-35 155.2 184 44.0
EL10Ac3g05641 Beta vulgaris HOM05D005770 ORTHO05D006702 1.9e-34 151.4 187 43.3
A04p01900 Brassica napus HOM05D005770 ORTHO05D006702 2.5e-34 151.0 186 44.6
BcaB02g08196 Brassica carinata HOM05D005770 ORTHO05D006702 3.2e-34 150.6 185 44.3
BcaC02g10107 Brassica carinata HOM05D005770 ORTHO05D006702 3.2e-34 150.6 184 45.1
BolC4t24834H Brassica oleracea HOM05D005770 ORTHO05D006702 3.2e-34 150.6 184 45.1
C04p32660 Brassica napus HOM05D005770 ORTHO05D006702 5.5e-34 149.8 184 44.6
BraA04t15913Z Brassica rapa HOM05D005770 ORTHO05D006702 1.2e-33 148.7 186 44.1
Ah.02g115560 Amaranthus hybridus HOM05D005770 ORTHO05D006702 2.1e-33 147.9 287 37.3
Medtr6g045263 Medicago truncatula HOM05D005770 ORTHO05D006702 2.1e-33 147.9 185 42.7
AUR62021190 Chenopodium quinoa HOM05D005770 ORTHO05D006702 3.6e-33 147.1 218 39.0
SEGI_17014 Sequoiadendron giganteum HOM05D005770 ORTHO05D006702 1.8e-32 144.8 191 39.3
SEGI_37272 Sequoiadendron giganteum HOM05D005770 ORTHO05D006702 1.8e-32 144.8 191 39.3
ScUNg0000600 Simmondsia chinensis HOM05D005770 ORTHO05D006702 1.2e-28 132.1 128 50.0
TPR.G10755 Trifolium pratense HOM05D005770 ORTHO05D006702 2.2e-27 127.9 185 40.5
EL10Ac3g05616 Beta vulgaris HOM05D005770 ORTHO05D006702 6.5e-27 126.3 200 38.5
Dinv28440 Davidia involucrata HOM05D005770 ORTHO05D006702 7.4e-23 112.8 110 50.0
Atru.chr1.457 Acer truncatum HOM05D005770 ORTHO05D006702 2.8e-22 110.9 103 51.5
Carub.0005s2679 Capsella rubella HOM05D005770 ORTHO05D006702 1.2e-20 105.5 230 33.5
FAN10G4138 Fragaria x ananassa HOM05D005770 ORTHO05D006702 4.5e-20 103.6 211 32.7
Potri.012G141400 Populus trichocarpa HOM05D005770 ORTHO05D006702 3.9e-16 90.5 199 34.2
SHI13783 Sapria himalayana HOM05D005770 ORTHO05D006702 4.4e-15 87.0 193 32.1
PGSC0003DMG400021371 Solanum tuberosum HOM05D006596 ORTHO05D008497 2.2e-11 74.7 184 28.8
Solyc01g006850.1 Solanum lycopersicum HOM05D006596 ORTHO05D008497 1.2e-09 68.9 211 27.5
Sopen01g002840 Solanum pennellii HOM05D006596 ORTHO05D008497 1.2e-09 68.9 212 26.4
Prupe.2G083800 Prunus persica HOM05D005770 ORTHO05D006702 4.0e-08 63.9 54 55.6
SalBow1G1508 Salvia bowleyana HOM05D006596 ORTHO05D008497 4.0e-08 63.9 149 26.8
CDE05G0489 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 5.2e-08 63.5 127 26.8
SEGI_11175 Sequoiadendron giganteum HOM05D007202 ORTHO05D009125 1.2e-07 62.4 123 28.5
Cc06_g06860 Coffea canephora HOM05D006596 ORTHO05D008497 2.0e-07 61.6 179 25.7
Nitab4.5_0009788g0010 Nicotiana tabacum HOM05D006596 ORTHO05D008497 3.4e-07 60.8 128 27.3
SEGI_36564 Sequoiadendron giganteum HOM05D000424 ORTHO05D002854 3.4e-07 60.8 184 25.0
MBI05_g00435_MAGBIO Magnolia biondii HOM05D006596 ORTHO05D008497 7.5e-07 59.7 179 25.1
AUR62006552 Chenopodium quinoa HOM05D006179 ORTHO05D008370 9.7e-07 59.3 179 25.1
DCAR_016913 Daucus carota HOM05D006596 ORTHO05D008497 1.7e-06 58.5 158 27.2
Peaxi162Scf00675g00062 Petunia axillaris HOM05D006596 ORTHO05D008497 1.7e-06 58.5 142 26.8
Cpa.g.sc9.15 Carica papaya HOM05D007409 ORTHO05D009264 2.2e-06 58.2 129 30.2
Thecc.05G108600 Theobroma cacao HOM05D006596 ORTHO05D008497 2.2e-06 58.2 181 25.4
Zm00001eb253100 Zea mays HOM05D006596 ORTHO05D008497 2.2e-06 58.2 205 26.3
Migut.O00313 Erythranthe guttata HOM05D006596 ORTHO05D008497 2.8e-06 57.8 175 24.0
TWI74G0317 Tripterygium wilfordii HOM05D006596 ORTHO05D008497 2.8e-06 57.8 216 26.4
BolC9t59785H Brassica oleracea HOM05D006596 ORTHO05D008497 4.8e-06 57.0 222 23.4
Sc09g0001040 Simmondsia chinensis HOM05D006596 ORTHO05D008497 6.3e-06 56.6 159 27.7
ATR0697G239 Amborella trichopoda HOM05D006596 ORTHO05D008497 8.3e-06 56.2 124 31.5
SEGI_33426 Sequoiadendron giganteum HOM05D006749 ORTHO05D008352 8.3e-06 56.2 183 24.6


User provided reference genes

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