Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G3204 Papaver somniferum HOM05D006992 ORTHO05D008752 5.9e-118 427.6 219 100.0
PSO832G0773 Papaver somniferum HOM05D006992 ORTHO05D008752 1.1e-116 423.3 219 98.6
Nn3g21348 Nelumbo nucifera HOM05D006992 ORTHO05D008752 1.2e-81 307.0 212 75.0
TAR633G1762 Trochodendron aralioides HOM05D006992 ORTHO05D008752 1.7e-80 303.1 223 71.3
CSS0031345 Camellia sinensis var. sinensis HOM05D006992 ORTHO05D008752 1.0e-77 293.9 193 76.2
Sed0003148 Sechium edule HOM05D006992 ORTHO05D008752 2.1e-75 286.2 208 70.2
Actinidia33837 Actinidia chinensis HOM05D006992 ORTHO05D008752 6.2e-75 284.6 192 74.0
CiPaw.08G178000 Carya illinoinensis HOM05D006992 ORTHO05D008752 8.1e-75 284.3 193 72.0
QL03p000176 Quercus lobata HOM05D006992 ORTHO05D008752 1.1e-74 283.9 215 65.6
HanXRQChr14g0445751 Helianthus annuus HOM05D006992 ORTHO05D008752 1.4e-74 283.5 202 69.8
ClCG03G016340 Citrullus lanatus HOM05D006992 ORTHO05D008752 2.4e-74 282.7 195 71.3
Lsat_1_v5_gn_2_67081 Lactuca sativa HOM05D006992 ORTHO05D008752 3.1e-74 282.3 188 71.8
PGR083G1999 Punica granatum HOM05D006992 ORTHO05D008752 3.1e-74 282.3 212 67.9
CiPaw.07G008900 Carya illinoinensis HOM05D006992 ORTHO05D008752 5.3e-74 281.6 218 64.7
Sc09g0003710 Simmondsia chinensis HOM05D006992 ORTHO05D008752 6.9e-74 281.2 212 65.1
Ciclev10002483m.g Citrus clementina HOM05D006992 ORTHO05D008752 9.0e-74 280.8 220 65.9
Prupe.6G337300 Prunus persica HOM05D006992 ORTHO05D008752 9.0e-74 280.8 192 71.4
MELO3C015384.2 Cucumis melo HOM05D006992 ORTHO05D008752 1.5e-73 280.0 195 71.3
Gohir.A13G106100 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.5e-73 280.0 189 73.0
RcHm_v2.0_Chr3g0452481 Rosa chinensis HOM05D006992 ORTHO05D008752 1.5e-73 280.0 209 66.5
CDE02G3150 Ceratophyllum demersum HOM05D006992 ORTHO05D008752 2.0e-73 279.6 215 64.7
FvH4_6g03930 Fragaria vesca HOM05D006992 ORTHO05D008752 2.0e-73 279.6 210 68.6
Atru.chr2.657 Acer truncatum HOM05D006992 ORTHO05D008752 4.5e-73 278.5 189 71.4
Gorai.013G122400 Gossypium raimondii HOM05D006992 ORTHO05D008752 4.5e-73 278.5 189 72.5
CsaV3_1G039620 Cucumis sativus L. HOM05D006992 ORTHO05D008752 5.8e-73 278.1 195 70.3
MD12G1234200 Malus domestica HOM05D006992 ORTHO05D008752 9.9e-73 277.3 190 71.1
CANSAT54G1892 Cannabis sativa HOM05D006992 ORTHO05D008752 1.3e-72 276.9 193 70.5
Gohir.D13G108900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.3e-72 276.9 189 72.0
TWI36G0139 Tripterygium wilfordii HOM05D006992 ORTHO05D008752 1.7e-72 276.6 202 70.3
Cfa006481 Carpinus fangiana HOM05D006992 ORTHO05D008752 1.4e-71 273.5 199 70.4
FAN05G0877 Fragaria x ananassa HOM05D000167 ORTHO05D000640 1.4e-71 273.5 205 69.3
CAN.G424.13 Capsicum annuum HOM05D006992 ORTHO05D008752 1.9e-71 273.1 198 68.7
Eucgr.B01740 Eucalyptus grandis HOM05D006992 ORTHO05D008752 2.4e-71 272.7 222 62.6
FAN14G0596 Fragaria x ananassa HOM05D006992 ORTHO05D008752 2.4e-71 272.7 204 68.6
THA.LOC104818652 Tarenaya hassleriana HOM05D006992 ORTHO05D008752 4.2e-71 271.9 197 69.5
Thecc.05G291400 Theobroma cacao HOM05D006992 ORTHO05D008752 4.2e-71 271.9 188 72.3
Oeu012474.1 Olea europaea HOM05D006992 ORTHO05D008752 5.5e-71 271.6 187 73.8
FAN09G1577 Fragaria x ananassa HOM05D000167 ORTHO05D000640 1.2e-70 270.4 205 68.8
ECA238G1326 Erigeron canadensis HOM05D006992 ORTHO05D008752 2.7e-70 269.2 174 75.9
QL03p000513 Quercus lobata HOM05D006992 ORTHO05D008752 2.7e-70 269.2 228 62.7
FAN05G5181 Fragaria x ananassa HOM05D006992 ORTHO05D008752 3.5e-70 268.9 204 68.1
Cc02_g31290 Coffea canephora HOM05D006992 ORTHO05D008752 1.0e-69 267.3 176 75.6
Aqoxy5G00680 Aquilegia oxysepala HOM05D006992 ORTHO05D008752 2.3e-69 266.2 218 64.7
GSVIVG01021889001 Vitis vinifera HOM05D006992 ORTHO05D008752 5.1e-69 265.0 176 73.3
EL10Ac4g09207 Beta vulgaris HOM05D006992 ORTHO05D008752 1.1e-68 263.8 212 64.6
Glyma.19G241400 Glycine max HOM05D006992 ORTHO05D008752 1.5e-68 263.5 206 65.0
Lj1g0025869 Lotus japonicus HOM05D006992 ORTHO05D008752 1.9e-68 263.1 195 69.7
AT3G04950 Arabidopsis thaliana HOM05D006992 ORTHO05D008752 2.5e-68 262.7 197 67.0
AUR62000954 Chenopodium quinoa HOM05D006992 ORTHO05D008752 2.5e-68 262.7 192 67.2
Rhsim05G0148900 Rhododendron simsii HOM05D006992 ORTHO05D008752 2.5e-68 262.7 205 66.8
vmacro19674 Vaccinium macrocarpon HOM05D006992 ORTHO05D008752 2.5e-68 262.7 186 71.5
Ca_09397_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 3.3e-68 262.3 204 64.7
Hund06999 Selenicereus undatus HOM05D006992 ORTHO05D008752 3.3e-68 262.3 219 63.5
AL3G15290 Arabidopsis lyrata HOM05D006992 ORTHO05D008752 4.3e-68 261.9 194 67.5
Carub.0003s0417 Capsella rubella HOM05D006992 ORTHO05D008752 5.6e-68 261.5 194 68.0
Phvul.006G097900 Phaseolus vulgaris HOM05D006992 ORTHO05D008752 9.6e-68 260.8 195 67.2
CARHR079260 Cardamine hirsuta HOM05D006992 ORTHO05D008752 2.1e-67 259.6 194 67.0
TPR.G6916 Trifolium pratense HOM05D006992 ORTHO05D008752 2.1e-67 259.6 218 61.5
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 2.8e-67 259.2 187 69.5
Manes.09G157800 Manihot esculenta HOM05D006992 ORTHO05D008752 3.7e-67 258.8 195 66.7
Nitab4.5_0001410g0140 Nicotiana tabacum HOM05D006992 ORTHO05D008752 6.2e-67 258.1 190 70.5
Psat0s2796g0040 Pisum sativum HOM05D006992 ORTHO05D008752 6.2e-67 258.1 224 61.2
Thhalv10021439m.g Eutrema salsugineum HOM05D006992 ORTHO05D008752 1.4e-66 256.9 194 66.5
FAN02G1922 Fragaria x ananassa HOM05D000167 ORTHO05D000640 1.4e-66 256.9 190 71.1
Medtr7g114390 Medicago truncatula HOM05D006992 ORTHO05D008752 1.4e-66 256.9 191 66.0
Nitab4.5_0004284g0080 Nicotiana tabacum HOM05D006992 ORTHO05D008752 5.3e-66 255.0 190 70.0
Solyc02g079130.3 Solanum lycopersicum HOM05D006992 ORTHO05D008752 5.3e-66 255.0 202 63.4
Sopen02g023930 Solanum pennellii HOM05D006992 ORTHO05D008752 9.0e-66 254.2 202 63.4
PGSC0003DMG400022358 Solanum tuberosum HOM05D006992 ORTHO05D008752 9.0e-66 254.2 204 63.7
Gorai.007G286500 Gossypium raimondii HOM05D006992 ORTHO05D008752 2.0e-65 253.1 192 65.6
Migut.N01946 Erythranthe guttata HOM05D006992 ORTHO05D008752 3.4e-65 252.3 195 64.1
DCAR_022834 Daucus carota HOM05D006992 ORTHO05D008752 4.5e-65 251.9 188 68.6
Sp3g03770 Schrenkiella parvula HOM05D006992 ORTHO05D008752 4.5e-65 251.9 194 63.9
BcaC01g04339 Brassica carinata HOM05D006992 ORTHO05D008752 5.8e-65 251.5 220 59.1
ATR0706G207 Amborella trichopoda HOM05D006992 ORTHO05D008752 2.2e-64 249.6 195 63.1
Gohir.A11G256900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.9e-64 249.2 192 64.6
Lalb_Chr18g0045231 Lupinus albus HOM05D006992 ORTHO05D008752 3.8e-64 248.8 216 60.6
BcaB04g19286 Brassica carinata HOM05D006992 ORTHO05D008752 6.5e-64 248.1 194 63.4
Potri.013G034100 Populus trichocarpa HOM05D006992 ORTHO05D008752 6.5e-64 248.1 195 64.1
Peaxi162Scf00103g00035 Petunia axillaris HOM05D006992 ORTHO05D008752 1.4e-63 246.9 177 68.4
Sabra13G0033300 Salix brachista HOM05D006992 ORTHO05D008752 3.2e-63 245.7 189 65.1
SalBow3G4063 Salvia bowleyana HOM05D006992 ORTHO05D008752 4.2e-63 245.4 218 57.3
arahy.Tifrunner.gnm1.ann1.ZZK2AU Arachis hypogaea HOM05D006992 ORTHO05D008752 1.6e-62 243.4 215 60.5
BolC3t16415H Brassica oleracea HOM05D006992 ORTHO05D008752 4.6e-62 241.9 214 58.9
BraA03t12570Z Brassica rapa HOM05D006992 ORTHO05D008752 4.6e-62 241.9 214 58.9
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 2.3e-61 239.6 166 72.9
C03p41330 Brassica napus HOM05D003164 ORTHO05D003575 5.1e-61 238.4 213 58.2
arahy.Tifrunner.gnm1.ann1.26USVU Arachis hypogaea HOM05D006992 ORTHO05D008752 8.7e-61 237.7 210 61.0
A03p33950 Brassica napus HOM05D003164 ORTHO05D003575 1.1e-60 237.3 213 58.2
Migut.N01944 Erythranthe guttata HOM05D006992 ORTHO05D008752 1.5e-60 236.9 192 62.0
SGA_v2.0_scaffold80G25908 Striga asiatica HOM05D006992 ORTHO05D008752 2.5e-60 236.1 184 64.1
Haze_04310 Corylus avellana HOM05D006992 ORTHO05D008752 8.2e-59 231.1 294 48.0
AUR62005014 Chenopodium quinoa HOM05D006992 ORTHO05D008752 1.1e-58 230.7 170 67.1
Os06g0298500 Oryza sativa ssp. japonica HOM05D006992 ORTHO05D008752 1.3e-56 223.8 186 60.2
Lj7A478T92 Lonicera japonica HOM05D006992 ORTHO05D008752 5.5e-55 218.4 276 47.5
SEGI_08689 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 1.0e-53 214.2 210 52.9
HPP92_017993 Vanilla planifolia HOM05D006992 ORTHO05D008752 6.7e-53 211.5 189 58.2
unitig_746.g26840 Utricularia gibba HOM05D006992 ORTHO05D008752 1.9e-52 209.9 140 70.7
HPP92_026697 Vanilla planifolia HOM05D006992 ORTHO05D008752 2.5e-52 209.5 187 58.3
Zm00001eb381040 Zea mays HOM05D006992 ORTHO05D008752 1.6e-51 206.8 186 57.5
PSO210G4341 Papaver somniferum HOM05D006992 ORTHO05D008752 2.4e-50 203.0 190 57.9
PSO339G2351 Papaver somniferum HOM05D006992 ORTHO05D008752 5.3e-50 201.8 190 56.3
PSO384G0024 Papaver somniferum HOM05D006992 ORTHO05D008752 5.9e-49 198.4 190 55.3
Ca_30169_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 5.1e-45 185.3 159 60.4
VMungo0540G1333 Vigna mungo HOM05D006992 ORTHO05D008752 1.1e-44 184.1 156 60.9
Gohir.D11G266700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.5e-44 183.7 149 62.4
Glyma.03G244000 Glycine max HOM05D006992 ORTHO05D008752 3.7e-43 179.1 170 55.3
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 3.4e-41 172.6 102 84.3
Gohir.D03G094700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.4e-34 149.8 98 71.4
SEGI_13740 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 7.2e-31 138.3 151 51.0
Aa31LG5G15340 Aethionema arabicum HOM05D006992 ORTHO05D008752 1.6e-30 137.1 80 81.2
FAN05G0951 Fragaria x ananassa HOM05D000167 ORTHO05D000640 1.6e-30 137.1 139 57.6
Gorai.001G169400 Gossypium raimondii HOM05D006992 ORTHO05D008752 4.8e-27 125.6 79 74.7
Gohir.D07G141600 Gossypium hirsutum HOM05D006992 ORTHO05D008752 4.1e-26 122.5 78 73.1
Gohir.D12G044200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 9.1e-26 121.3 79 72.2
SMO361G0250 Selaginella moellendorffii HOM05D006992 ORTHO05D008752 2.3e-21 106.7 154 44.2
RcHm_v2.0_Chr3g0452521 Rosa chinensis HOM05D006992 ORTHO05D008752 1.5e-20 104.0 100 54.0
RcHm_v2.0_Chr1g0321781 Rosa chinensis HOM05D006992 ORTHO05D008752 4.5e-17 92.4 61 70.5
RcHm_v2.0_Chr6g0246461 Rosa chinensis HOM05D006992 ORTHO05D008752 1.3e-16 90.9 61 68.9
Gohir.D03G082200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 5.5e-15 85.5 56 71.4
VMungo0331G0785 Vigna mungo HOM05D006992 ORTHO05D008752 3.7e-11 72.8 77 50.6
Sp3g03780 Schrenkiella parvula HOM05D000160 ORTHO05D000914 5.4e-10 68.9 36 83.3
Gorai.010G111000 Gossypium raimondii HOM05D001408 ORTHO05D001312 3.5e-09 66.2 40 72.5
Gohir.D06G096300 Gossypium hirsutum HOM05D001408 ORTHO05D001312 2.9e-08 63.2 40 67.5
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 3.8e-08 62.8 39 71.8
RcHm_v2.0_Chr3g0452531 Rosa chinensis HOM05D006992 ORTHO05D008752 8.6e-08 61.6 35 82.9
SGA_v2.0_scaffold243G44307 Striga asiatica HOM05D060893 ORTHO05D008752 2.8e-06 56.6 119 37.8


User provided reference genes

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