Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 2188.7 1113 100.0
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 2097.4 1114 95.7
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 0.0e+00 1631.7 1118 73.3
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 0.0e+00 1552.3 1149 69.3
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1546.6 1116 69.4
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 0.0e+00 1510.0 1129 67.1
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 0.0e+00 1479.2 1118 67.2
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 0.0e+00 1462.6 1123 66.2
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 0.0e+00 1449.5 1119 65.1
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 0.0e+00 1431.0 1129 65.0
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1426.4 1120 64.4
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 0.0e+00 1410.6 1115 64.8
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 0.0e+00 1401.7 1200 60.8
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 0.0e+00 1400.6 1121 63.2
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 0.0e+00 1397.5 1184 61.5
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 0.0e+00 1394.4 1122 63.7
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 0.0e+00 1390.6 1118 63.8
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 0.0e+00 1384.0 1157 62.2
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1382.1 1118 62.7
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 0.0e+00 1378.6 1115 62.7
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 0.0e+00 1377.1 1138 61.3
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 0.0e+00 1376.7 1116 62.5
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 0.0e+00 1369.8 1067 65.0
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1369.0 1115 63.2
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1368.6 1117 62.8
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 0.0e+00 1364.0 1118 61.9
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1363.2 1114 62.2
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1362.1 1114 62.2
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1361.7 1114 63.3
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 0.0e+00 1359.4 1115 61.8
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 0.0e+00 1357.4 1128 61.4
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 0.0e+00 1352.8 1116 61.1
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 0.0e+00 1350.9 1125 61.4
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 0.0e+00 1350.1 1117 61.6
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 0.0e+00 1348.2 1112 61.8
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 0.0e+00 1347.4 1119 61.8
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 0.0e+00 1342.4 1117 61.1
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1342.0 1116 60.3
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 0.0e+00 1340.9 1120 61.5
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 0.0e+00 1338.6 1117 61.1
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 0.0e+00 1326.2 1113 60.5
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 0.0e+00 1324.7 1120 60.6
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 0.0e+00 1317.8 1184 57.5
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 0.0e+00 1317.0 1128 61.0
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1311.2 1122 60.2
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1309.3 1125 58.4
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 0.0e+00 1308.1 1114 60.0
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1307.4 1125 58.4
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 0.0e+00 1305.8 1120 60.4
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 0.0e+00 1305.8 1121 60.4
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 0.0e+00 1305.0 1114 59.9
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 0.0e+00 1302.0 1120 59.4
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1301.2 1125 60.2
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1300.4 1115 60.2
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1298.5 1120 60.2
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1297.7 1120 60.2
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 0.0e+00 1297.0 1132 59.3
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1294.3 915 69.6
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1294.3 1119 59.4
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1293.9 1131 59.5
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1293.5 1092 59.8
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1293.5 1114 58.6
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1293.1 1092 59.8
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1291.6 1174 57.5
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 0.0e+00 1291.6 1113 58.7
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 0.0e+00 1290.8 1109 60.0
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 0.0e+00 1283.5 1115 59.0
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1279.2 1120 59.5
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1278.5 1092 59.4
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 0.0e+00 1276.5 1171 58.4
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 0.0e+00 1267.7 1108 58.8
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1266.9 1123 58.0
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 0.0e+00 1265.4 1136 58.9
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 0.0e+00 1263.1 1109 59.2
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 0.0e+00 1255.4 1122 58.2
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1255.0 1107 58.7
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1254.2 1113 58.7
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1253.4 1116 58.4
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1251.1 1117 58.7
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1251.1 1117 58.7
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 0.0e+00 1244.2 1103 58.4
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1243.0 1107 59.1
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 0.0e+00 1242.6 1108 58.4
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 0.0e+00 1242.3 1108 58.0
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 0.0e+00 1241.9 1114 57.5
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 0.0e+00 1241.5 1103 59.1
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 0.0e+00 1234.6 957 65.3
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1231.1 1109 58.3
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 0.0e+00 1224.9 1103 58.2
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1221.5 1111 57.7
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1217.6 1182 54.7
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1215.3 1111 57.4
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 0.0e+00 1213.0 958 64.4
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1206.4 1118 56.5
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 0.0e+00 1206.4 1109 57.4
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 0.0e+00 1206.4 1003 62.6
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 0.0e+00 1203.3 1086 57.5
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 0.0e+00 1200.7 1129 56.9
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 0.0e+00 1174.8 1019 59.4
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 0.0e+00 1167.9 1168 55.0
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1165.6 1010 59.4
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 0.0e+00 1145.6 793 70.7
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1144.4 963 61.3
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1126.7 954 60.5
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 0.0e+00 1119.8 841 65.9
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 0.0e+00 1088.9 1150 50.8
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 1.2e-307 1060.1 904 59.8
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 1.2e-304 1050.0 1024 54.7
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 1.5e-297 1026.5 755 65.7
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 2.9e-293 1012.3 647 76.4
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 6.0e-283 978.0 1131 47.8
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 1.1e-273 947.2 1004 51.4
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 2.9e-269 932.6 798 59.4
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 6.7e-266 921.4 1152 45.3
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 3.0e-258 896.0 1102 45.5
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 1.4e-255 887.1 819 54.9
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 2.3e-205 720.3 980 42.8
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 9.0e-170 602.1 1106 36.7
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 7.6e-161 572.4 446 64.6
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 6.4e-152 542.7 456 59.4
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 1.6e-147 528.1 1127 34.1
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 3.1e-138 497.3 537 51.0
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 2.7e-126 457.6 330 65.5
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 5.2e-101 373.6 294 61.9
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 3.1e-98 364.4 1145 26.4
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 4.1e-82 310.8 378 47.1
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 6.0e-81 307.0 523 38.8
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 2.3e-77 295.0 233 63.5
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 2.9e-67 261.5 387 41.3
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 6.2e-62 243.8 261 50.6
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.6e-60 238.4 258 50.8
Actinidia36160 Actinidia chinensis HOM05D004846 ORTHO05D005630 1.9e-55 222.2 232 53.0
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.8e-53 215.7 209 54.1
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 6.4e-51 207.2 223 50.2
Hma1.2p1_0279F.1_g112210 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 6.4e-51 207.2 210 54.8
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.6e-44 185.3 223 44.4
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.6e-44 185.3 223 44.4
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.6e-44 185.3 223 44.4
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 9.9e-44 183.3 394 34.5
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.7e-43 182.6 223 43.9
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.2e-43 182.2 223 43.9
Nn7g36110 Nelumbo nucifera HOM05D004846 ORTHO05D005630 1.3e-40 172.9 144 62.5
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 6.9e-37 160.6 243 40.3
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 5.8e-36 157.5 223 40.4
C07p36330 Brassica napus HOM05D004846 ORTHO05D017504 2.9e-35 155.2 248 40.3
BolC7t44149H Brassica oleracea HOM05D004846 ORTHO05D017504 3.8e-35 154.8 248 40.3
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 1.2e-33 149.8 366 31.4
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 6.0e-33 147.5 248 39.1
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 6.5e-27 127.5 241 35.7
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 9.7e-23 113.6 81 66.7
SEGI_31417 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 8.2e-22 110.5 103 58.3
Eucgr.J00244 Eucalyptus grandis HOM05D004846 ORTHO05D005630 9.0e-21 107.1 130 46.2
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 1.9e-18 99.4 296 27.7
Dinv00598 Davidia involucrata HOM05D004846 ORTHO05D005630 1.8e-16 92.8 77 59.7
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 3.3e-15 88.6 58 67.2
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 9.7e-15 87.0 52 78.8
Ca_14625_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 2.5e-10 72.4 73 50.7


User provided reference genes

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