Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G2671 Papaver somniferum HOM05D004451 ORTHO05D005177 3.1e-143 511.9 282 100.0
PSO170G0588 Papaver somniferum HOM05D004451 ORTHO05D005177 1.3e-141 506.5 282 98.9
GSVIVG01003161001 Vitis vinifera HOM05D004451 ORTHO05D005177 7.7e-94 347.8 296 69.3
arahy.Tifrunner.gnm1.ann1.BMM90D Arachis hypogaea HOM05D004451 ORTHO05D005177 2.9e-93 345.9 290 69.0
TAR381G0562 Trochodendron aralioides HOM05D004451 ORTHO05D005177 2.5e-92 342.8 297 68.7
Cc02_g19230 Coffea canephora HOM05D004451 ORTHO05D005177 1.6e-91 340.1 289 69.9
Aqoxy5G01146 Aquilegia oxysepala HOM05D004451 ORTHO05D005177 2.1e-91 339.7 287 71.1
Phvul.007G040300 Phaseolus vulgaris HOM05D004451 ORTHO05D005177 2.1e-91 339.7 286 69.2
Prupe.8G134600 Prunus persica HOM05D004451 ORTHO05D005177 2.1e-91 339.7 292 67.1
Nn1g04705 Nelumbo nucifera HOM05D004451 ORTHO05D005177 3.6e-91 339.0 295 69.5
Gohir.A13G043700 Gossypium hirsutum HOM05D004451 ORTHO05D005177 4.7e-91 338.6 288 69.8
arahy.Tifrunner.gnm1.ann1.S5NBXN Arachis hypogaea HOM05D004451 ORTHO05D005177 6.1e-91 338.2 293 67.2
Gorai.013G047100 Gossypium raimondii HOM05D004451 ORTHO05D005177 1.0e-90 337.4 288 69.8
CANSAT25G0591 Cannabis sativa HOM05D004451 ORTHO05D005177 1.4e-90 337.0 226 80.5
CANSAT25G2876 Cannabis sativa HOM05D004451 ORTHO05D005177 1.4e-90 337.0 226 80.5
Gohir.D13G042200 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.8e-90 336.7 287 70.0
Manes.07G069100 Manihot esculenta HOM05D004451 ORTHO05D005177 1.8e-90 336.7 302 67.2
Thecc.02G107400 Theobroma cacao HOM05D004451 ORTHO05D005177 1.8e-90 336.7 289 69.9
Oeu010397.1 Olea europaea HOM05D004451 ORTHO05D005177 8.8e-90 334.3 289 69.2
Gohir.D02G207300 Gossypium hirsutum HOM05D004451 ORTHO05D005177 2.6e-89 332.8 299 65.9
RcHm_v2.0_Chr6g0255371 Rosa chinensis HOM05D004451 ORTHO05D005177 2.6e-89 332.8 286 68.5
VMungo0720G2723 Vigna mungo HOM05D004451 ORTHO05D005177 2.6e-89 332.8 284 69.0
Duzib248G1610 Durio zibethinus HOM05D004451 ORTHO05D005177 3.4e-89 332.4 268 71.3
Lj5g0008999 Lotus japonicus HOM05D004451 ORTHO05D005177 3.4e-89 332.4 264 73.1
QL11p033916 Quercus lobata HOM05D004451 ORTHO05D005177 3.4e-89 332.4 267 70.0
Glyma.10G261800 Glycine max HOM05D004451 ORTHO05D005177 4.4e-89 332.0 266 69.9
Gorai.005G235200 Gossypium raimondii HOM05D004451 ORTHO05D005177 4.4e-89 332.0 296 66.2
PGR142G3187 Punica granatum HOM05D004451 ORTHO05D005177 5.7e-89 331.6 271 69.0
Actinidia00412 Actinidia chinensis HOM05D004451 ORTHO05D005177 9.8e-89 330.9 297 66.0
Actinidia17478 Actinidia chinensis HOM05D004451 ORTHO05D005177 9.8e-89 330.9 296 66.9
Ciclev10029016m.g Citrus clementina HOM05D004451 ORTHO05D005177 9.8e-89 330.9 289 67.8
Glyma.20G129100 Glycine max HOM05D004451 ORTHO05D005177 9.8e-89 330.9 266 70.3
TAR628G0195 Trochodendron aralioides HOM05D004451 ORTHO05D005177 9.8e-89 330.9 293 67.2
MD05G1088600 Malus domestica HOM05D004451 ORTHO05D005177 1.3e-88 330.5 290 68.3
TWI79G0876 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 1.3e-88 330.5 272 69.1
Atru.chr5.2587 Acer truncatum HOM05D004451 ORTHO05D005177 1.7e-88 330.1 289 69.2
Rhsim05G0088400 Rhododendron simsii HOM05D004451 ORTHO05D005177 2.8e-88 329.3 294 64.6
Hma1.2p1_0796F.1_g219180 Hydrangea macrophylla HOM05D004451 ORTHO05D005177 4.8e-88 328.6 234 75.2
Medtr1g107450 Medicago truncatula HOM05D004451 ORTHO05D005177 6.3e-88 328.2 282 68.8
HanXRQChr16g0514851 Helianthus annuus HOM05D004451 ORTHO05D005177 8.3e-88 327.8 213 80.3
COL.COLO4_32599 Corchorus olitorius HOM05D004451 ORTHO05D005177 1.1e-87 327.4 290 66.6
Lj9C321G12 Lonicera japonica HOM05D004451 ORTHO05D005177 1.1e-87 327.4 217 79.7
ECA234G3549 Erigeron canadensis HOM05D004451 ORTHO05D005177 1.4e-87 327.0 286 66.8
CSS0044080 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 1.8e-87 326.6 263 71.5
MELO3C018494.2 Cucumis melo HOM05D004451 ORTHO05D005177 1.8e-87 326.6 224 77.7
Gohir.A03G186500 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.8e-87 326.6 298 64.8
Ca_11078_v3 Cicer arietinum L. HOM05D004451 ORTHO05D005177 2.4e-87 326.2 282 68.4
Psat6g219200 Pisum sativum HOM05D004451 ORTHO05D005177 3.1e-87 325.9 283 69.6
Nitab4.5_0002815g0090 Nicotiana tabacum HOM05D004451 ORTHO05D005177 5.4e-87 325.1 294 66.0
Haze_10166 Corylus avellana HOM05D004451 ORTHO05D005177 7.0e-87 324.7 263 69.2
CSS0017890 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 9.1e-87 324.3 300 66.7
Sed0001090 Sechium edule HOM05D004451 ORTHO05D005177 1.6e-86 323.6 258 70.9
Sed0013348 Sechium edule HOM05D004451 ORTHO05D005177 1.6e-86 323.6 266 68.8
SGA_v2.0_scaffold32G13039 Striga asiatica HOM05D004451 ORTHO05D005177 1.6e-86 323.6 289 66.4
Potri.009G096300 Populus trichocarpa HOM05D004451 ORTHO05D005177 2.0e-86 323.2 296 66.6
Cpa.g.sc106.89 Carica papaya HOM05D004451 ORTHO05D005177 2.7e-86 322.8 294 67.0
Cfa004574 Carpinus fangiana HOM05D004451 ORTHO05D005177 2.7e-86 322.8 218 79.4
TWI31G0226 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 3.5e-86 322.4 296 64.5
CsaV3_7G008120 Cucumis sativus L. HOM05D004451 ORTHO05D005177 4.5e-86 322.0 264 69.3
SalBow6G6827 Salvia bowleyana HOM05D004451 ORTHO05D005177 5.9e-86 321.6 292 67.8
vmacro19448 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 5.9e-86 321.6 296 65.5
Actinidia05493 Actinidia chinensis HOM05D004451 ORTHO05D005177 7.7e-86 321.2 218 76.6
Potri.001G300500 Populus trichocarpa HOM05D004451 ORTHO05D005177 7.7e-86 321.2 295 66.1
MSTRG.20184 Avicennia marina HOM05D004451 ORTHO05D005177 1.0e-85 320.9 225 75.6
Migut.B00385 Erythranthe guttata HOM05D004451 ORTHO05D005177 1.0e-85 320.9 245 74.3
Oeu018597.1 Olea europaea HOM05D004451 ORTHO05D005177 1.7e-85 320.1 289 66.4
Peaxi162Scf00016g02324 Petunia axillaris HOM05D004451 ORTHO05D005177 1.7e-85 320.1 285 65.6
FAN24G2858 Fragaria x ananassa HOM05D004451 ORTHO05D005177 2.2e-85 319.7 233 75.1
MD10G1096700 Malus domestica HOM05D004451 ORTHO05D005177 2.2e-85 319.7 286 66.4
Manes.10G076300 Manihot esculenta HOM05D004451 ORTHO05D005177 2.2e-85 319.7 238 73.9
Nn5g30419 Nelumbo nucifera HOM05D004451 ORTHO05D005177 2.2e-85 319.7 292 68.2
CSS0019678 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 2.9e-85 319.3 307 62.5
FAN20G1574 Fragaria x ananassa HOM05D004451 ORTHO05D005177 3.8e-85 318.9 283 67.1
ClCG02G006310 Citrullus lanatus HOM05D004451 ORTHO05D005177 5.0e-85 318.5 302 64.9
Duzib132G0413 Durio zibethinus HOM05D004451 ORTHO05D005177 1.9e-84 316.6 291 67.4
FAN27G3473 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.9e-84 316.6 286 65.7
CiPaw.05G011200 Carya illinoinensis HOM05D004451 ORTHO05D005177 2.5e-84 316.2 292 64.4
Lalb_Chr02g0145321 Lupinus albus HOM05D004451 ORTHO05D005177 4.2e-84 315.5 203 82.8
PGSC0003DMG400025865 Solanum tuberosum HOM05D004451 ORTHO05D005177 5.5e-84 315.1 287 64.1
FvH4_2g05240 Fragaria vesca HOM05D004451 ORTHO05D005177 7.2e-84 314.7 286 66.1
Sopen01g049830 Solanum pennellii HOM05D004451 ORTHO05D005177 9.4e-84 314.3 289 65.7
Nitab4.5_0005392g0030 Nicotiana tabacum HOM05D004451 ORTHO05D005177 1.6e-83 313.5 288 65.3
Aa31LG8G13140 Aethionema arabicum HOM05D004451 ORTHO05D005177 2.1e-83 313.2 270 68.1
CiPaw.06G169600 Carya illinoinensis HOM05D004451 ORTHO05D005177 2.1e-83 313.2 259 68.0
Lalb_Chr06g0165471 Lupinus albus HOM05D004451 ORTHO05D005177 4.7e-83 312.0 203 81.3
Solyc01g107640.3 Solanum lycopersicum HOM05D004451 ORTHO05D005177 1.0e-82 310.8 290 64.5
FAN15G2242 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.4e-82 310.5 299 63.9
HanXRQChr10g0292341 Helianthus annuus HOM05D004451 ORTHO05D005177 1.4e-82 310.5 207 77.3
Lsat_1_v5_gn_5_114881 Lactuca sativa HOM05D004451 ORTHO05D005177 5.2e-82 308.5 264 67.0
MSTRG.16716 Avicennia marina HOM05D004451 ORTHO05D005177 2.0e-81 306.6 269 66.5
A07p05320 Brassica napus HOM05D004451 ORTHO05D005177 5.7e-81 305.1 296 61.5
BraA07t28325Z Brassica rapa HOM05D004451 ORTHO05D005177 5.7e-81 305.1 296 61.5
EL10Ac9g22281 Beta vulgaris HOM05D004451 ORTHO05D005177 9.8e-81 304.3 289 63.3
Sp3g28570 Schrenkiella parvula HOM05D004451 ORTHO05D005177 1.3e-80 303.9 299 60.2
DCAR_001641 Daucus carota HOM05D004451 ORTHO05D005177 1.7e-80 303.5 193 80.3
THA.LOC104819557 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 2.2e-80 303.1 275 65.5
AUR62039084 Chenopodium quinoa HOM05D004451 ORTHO05D005177 1.4e-79 300.4 287 63.4
BcaB07g31794 Brassica carinata HOM05D004451 ORTHO05D005177 2.4e-79 299.7 284 60.2
A09p10690 Brassica napus HOM05D004451 ORTHO05D005177 3.1e-79 299.3 269 63.2
Thhalv10022775m.g Eutrema salsugineum HOM05D004451 ORTHO05D005177 5.4e-79 298.5 293 60.1
AT2G15290 Arabidopsis thaliana HOM05D004451 ORTHO05D005177 7.0e-79 298.1 298 59.7
BcaB03g16278 Brassica carinata HOM05D004451 ORTHO05D005177 7.0e-79 298.1 276 63.0
BcaC06g36051 Brassica carinata HOM05D004451 ORTHO05D005177 1.2e-78 297.4 299 59.9
C07p08470 Brassica napus HOM05D004451 ORTHO05D005177 1.2e-78 297.4 295 61.0
BcaB08g34587 Brassica carinata HOM05D004451 ORTHO05D005177 1.6e-78 297.0 298 60.7
C09p12690 Brassica napus HOM05D004451 ORTHO05D005177 1.6e-78 297.0 286 60.1
BolC7t41261H Brassica oleracea HOM05D004451 ORTHO05D005177 1.6e-78 297.0 295 60.3
CDE04G0259 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 1.6e-78 297.0 198 76.8
AL3G47010 Arabidopsis lyrata HOM05D004451 ORTHO05D005177 2.0e-78 296.6 298 59.7
BolC9t54158H Brassica oleracea HOM05D004451 ORTHO05D005177 2.0e-78 296.6 286 59.8
SGA_v2.0_scaffold225G43078 Striga asiatica HOM05D004451 ORTHO05D005177 2.7e-78 296.2 237 70.0
Hund06320 Selenicereus undatus HOM05D004451 ORTHO05D005177 4.5e-78 295.4 298 61.4
Sabra09G0074000 Salix brachista HOM05D004451 ORTHO05D005177 7.7e-78 294.7 323 57.6
Rhsim11G0160300 Rhododendron simsii HOM05D004451 ORTHO05D005177 3.8e-77 292.4 264 63.6
CARHR105660 Cardamine hirsuta HOM05D004451 ORTHO05D005177 6.6e-77 291.6 296 60.8
AUR62010302 Chenopodium quinoa HOM05D004451 ORTHO05D005177 6.6e-77 291.6 296 60.8
Sabra16G0188700 Salix brachista HOM05D004451 ORTHO05D005177 7.2e-76 288.1 341 54.0
Carub.0003s2912 Capsella rubella HOM05D004451 ORTHO05D005177 1.2e-75 287.3 296 59.5
Hund00148 Selenicereus undatus HOM05D004451 ORTHO05D005177 8.0e-75 284.6 296 57.1
THA.LOC104807244 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 8.0e-75 284.6 272 62.9
HPP92_004770 Vanilla planifolia HOM05D004451 ORTHO05D005177 1.0e-74 284.3 280 60.0
BcaC06g31580 Brassica carinata HOM05D004451 ORTHO05D005177 2.3e-74 283.1 193 77.2
Ah.01g018220 Amaranthus hybridus HOM05D004451 ORTHO05D005177 4.0e-74 282.3 295 58.0
Os02g0187600 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 4.0e-74 282.3 197 75.1
unitig_22.g5194 Utricularia gibba HOM05D004451 ORTHO05D005177 2.9e-72 276.2 281 58.0
Eucgr.E02954 Eucalyptus grandis HOM05D004451 ORTHO05D005177 4.9e-72 275.4 209 72.7
SEGI_03021 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 1.4e-71 273.9 201 73.1
Zm00001eb206410 Zea mays HOM05D004451 ORTHO05D005177 7.0e-71 271.6 182 76.9
Dinv15761 Davidia involucrata HOM05D004451 ORTHO05D005177 3.5e-70 269.2 249 64.7
Os06g0638100 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 4.6e-70 268.9 295 58.0
vmacro19524 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 4.6e-70 268.9 354 51.1
Mapoly0049s0087 Marchantia polymorpha HOM05D004451 ORTHO05D005177 1.0e-69 267.7 247 63.2
Sc17g0003020 Simmondsia chinensis HOM05D004451 ORTHO05D005177 8.6e-69 264.6 255 63.1
Pp3c27_4260 Physcomitrium patens HOM05D004451 ORTHO05D005177 1.1e-68 264.2 195 71.3
ECA240G4367 Erigeron canadensis HOM05D004451 ORTHO05D005177 1.5e-68 263.8 196 74.0
BraA09t36712Z Brassica rapa HOM05D004451 ORTHO05D005177 4.3e-68 262.3 348 49.1
Pp3c1_21740 Physcomitrium patens HOM05D004451 ORTHO05D005177 5.6e-68 261.9 301 55.5
Pp3c10_9500 Physcomitrium patens HOM05D004451 ORTHO05D005177 7.3e-68 261.5 275 57.8
ATR0691G207 Amborella trichopoda HOM05D004451 ORTHO05D005177 1.6e-67 260.4 232 64.2
Zm00001eb387350 Zea mays HOM05D004451 ORTHO05D005177 2.1e-67 260.0 276 56.2
AagrBONN_evm.TU.Sc2ySwM_344.1281 Anthoceros agrestis HOM05D004451 ORTHO05D005177 2.8e-67 259.6 236 62.3
DCAR_021989 Daucus carota HOM05D004451 ORTHO05D005177 7.5e-65 251.5 250 59.2
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 1.1e-63 247.7 248 58.1
unitig_8.g3679 Utricularia gibba HOM05D004451 ORTHO05D005177 6.0e-62 241.9 192 66.7
SMO118G0560 Selaginella moellendorffii HOM05D004451 ORTHO05D005177 8.3e-56 221.5 180 63.3
CBR_g39267 Chara braunii HOM05D004451 ORTHO05D005177 1.2e-54 217.6 220 58.6
vmacro02006 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 1.1e-44 184.5 194 55.7
SHI05289 Sapria himalayana HOM05D004451 ORTHO05D005177 1.5e-44 184.1 191 57.1
CDE06G1648 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 7.3e-44 181.8 213 54.0
TAR381G0937 Trochodendron aralioides HOM05D004451 ORTHO05D005177 9.6e-44 181.4 107 91.6
Zm00001eb234680 Zea mays HOM05D004451 ORTHO05D005177 1.4e-34 151.0 205 47.3
MCO10G127 Micromonas commoda HOM05D004451 ORTHO05D005177 3.4e-33 146.4 202 45.0
CAN.G1231.10 Capsicum annuum HOM05D004451 ORTHO05D005177 1.0e-29 134.8 87 73.6
SEGI_11302 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 2.5e-28 130.2 95 70.5
Cre10.g454734 Chlamydomonas reinhardtii HOM05D000133 ORTHO05D005177 4.5e-25 119.4 233 36.9
PRCOL_00004645 Prasinoderma coloniale HOM05D004451 ORTHO05D005177 4.5e-25 119.4 204 40.2
CAN.G3385.1 Capsicum annuum HOM05D004451 ORTHO05D005177 3.8e-24 116.3 78 80.8
HPP92_008279 Vanilla planifolia HOM05D004451 ORTHO05D005177 2.4e-23 113.6 133 51.9
HanXRQChr01g0018911 Helianthus annuus HOM05D004451 ORTHO05D005177 2.8e-19 100.1 63 79.4
HanXRQChr17g0567381 Helianthus annuus HOM05D004451 ORTHO05D005177 3.7e-19 99.8 63 79.4
CBR_g28861 Chara braunii HOM05D004451 ORTHO05D009492 4.0e-18 96.3 87 55.2
Cre11.g467759 Chlamydomonas reinhardtii HOM05D027551 ORTHO05D005177 3.0e-13 80.1 242 30.2
HanXRQChr05g0151971 Helianthus annuus HOM05D002664 ORTHO05D002974 4.8e-11 72.8 42 83.3


User provided reference genes

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