Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 1.7e-126 456.1 235 100.0
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 1.2e-119 433.3 235 94.9
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 1.6e-113 412.9 235 88.5
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 3.6e-113 411.8 235 89.8
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 6.0e-108 394.4 241 85.5
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 1.1e-93 347.1 235 72.8
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 1.1e-88 330.5 234 69.2
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 1.8e-88 329.7 236 72.5
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 2.4e-88 329.3 236 72.5
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 5.3e-88 328.2 228 74.1
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 6.9e-88 327.8 236 70.3
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 1.7e-86 323.2 234 70.1
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 4.2e-85 318.5 221 73.3
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 1.6e-84 316.6 257 63.8
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 1.6e-84 316.6 236 67.8
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 2.7e-84 315.8 236 69.1
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 4.6e-84 315.1 225 72.0
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 4.6e-84 315.1 235 68.5
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 1.3e-83 313.5 237 69.6
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.3e-83 312.8 237 69.6
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 2.3e-83 312.8 235 68.1
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 3.0e-83 312.4 237 69.2
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 6.7e-83 311.2 235 66.4
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 8.7e-83 310.8 237 68.8
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 1.5e-82 310.1 225 69.8
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 1.5e-82 310.1 235 66.4
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 1.9e-82 309.7 236 68.2
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 3.3e-82 308.9 236 67.8
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 5.6e-82 308.1 237 68.8
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 5.6e-82 308.1 235 68.9
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 7.4e-82 307.8 218 72.0
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.3e-81 307.0 224 67.9
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 2.1e-81 306.2 220 68.6
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 2.8e-81 305.8 236 66.1
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 6.2e-81 304.7 220 71.4
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 6.2e-81 304.7 236 66.9
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 6.2e-81 304.7 235 65.1
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 1.4e-80 303.5 235 67.7
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.8e-80 303.1 237 67.5
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 5.3e-80 301.6 223 67.7
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 6.9e-80 301.2 235 65.1
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 1.5e-79 300.1 235 64.7
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 2.0e-79 299.7 236 65.3
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 2.0e-79 299.7 235 65.5
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 2.0e-79 299.7 237 65.4
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 4.5e-79 298.5 236 64.4
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 4.5e-79 298.5 235 64.3
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 5.8e-79 298.1 235 66.8
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 5.8e-79 298.1 236 64.8
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 1.0e-78 297.4 236 65.7
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 1.0e-78 297.4 217 67.3
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 1.0e-78 297.4 253 62.5
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 1.3e-78 297.0 236 64.8
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 1.3e-78 297.0 217 70.0
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 2.2e-78 296.2 235 64.3
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 2.2e-78 296.2 235 64.3
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 2.9e-78 295.8 221 67.4
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 2.9e-78 295.8 235 64.7
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 2.9e-78 295.8 234 63.7
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 3.8e-78 295.4 236 63.1
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 3.8e-78 295.4 233 63.9
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 3.8e-78 295.4 233 65.2
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 3.8e-78 295.4 233 64.4
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 6.5e-78 294.7 240 62.1
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 6.5e-78 294.7 235 65.5
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 6.5e-78 294.7 222 66.7
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 8.4e-78 294.3 235 62.6
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 8.4e-78 294.3 236 64.4
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 8.4e-78 294.3 235 63.4
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 8.4e-78 294.3 235 62.6
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 1.1e-77 293.9 229 67.2
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 1.4e-77 293.5 236 63.6
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.5e-77 292.7 235 63.0
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 4.2e-77 292.0 226 65.0
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 4.2e-77 292.0 213 68.1
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 4.2e-77 292.0 224 65.2
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 4.2e-77 292.0 223 66.8
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 5.5e-77 291.6 225 65.3
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 5.5e-77 291.6 218 68.3
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 7.1e-77 291.2 224 66.5
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 9.3e-77 290.8 240 60.8
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 9.3e-77 290.8 224 66.1
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 9.3e-77 290.8 224 66.1
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 1.2e-76 290.4 231 61.9
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 7.9e-76 287.7 234 66.2
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 1.0e-75 287.3 218 68.8
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 1.0e-75 287.3 220 67.7
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 1.3e-75 287.0 232 61.6
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.3e-75 287.0 218 66.1
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 1.8e-75 286.6 293 55.6
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 1.8e-75 286.6 223 67.3
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 6.7e-75 284.6 239 61.1
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 6.7e-75 284.6 212 68.9
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 8.7e-75 284.3 235 62.1
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 1.5e-74 283.5 231 60.6
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 1.5e-74 283.5 231 60.6
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 2.5e-74 282.7 227 63.4
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 2.5e-74 282.7 224 64.3
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 2.5e-74 282.7 219 66.7
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 5.7e-74 281.6 217 67.3
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 1.3e-73 280.4 217 63.1
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.6e-73 280.0 207 69.1
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 2.1e-73 279.6 203 68.0
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 2.1e-73 279.6 224 65.6
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 2.8e-73 279.3 220 64.1
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 3.7e-73 278.9 223 62.3
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 6.3e-73 278.1 217 62.7
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 2.4e-72 276.2 266 58.6
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 5.3e-72 275.0 223 66.8
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 1.2e-71 273.9 235 60.9
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 1.5e-71 273.5 235 60.9
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 1.5e-71 273.5 213 64.8
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 1.5e-71 273.5 257 58.4
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.6e-71 272.7 234 62.8
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 3.5e-68 262.3 236 60.6
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.3e-67 259.6 237 59.5
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 2.3e-67 259.6 317 46.7
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 2.3e-67 259.6 215 61.9
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 1.9e-66 256.5 170 74.7
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 3.3e-66 255.8 145 89.0
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 8.2e-65 251.1 170 73.5
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 1.1e-64 250.8 202 63.4
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 2.4e-64 249.6 235 58.3
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.2e-61 239.2 164 72.6
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 1.2e-60 237.3 235 56.2
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 2.7e-60 236.1 215 59.5
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 3.6e-60 235.7 221 58.4
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 2.0e-55 219.9 226 51.8
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 4.5e-55 218.8 176 63.1
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 2.2e-54 216.5 235 51.1
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 2.9e-54 216.1 228 48.2
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 9.4e-53 211.1 220 51.8
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 1.2e-52 210.7 176 55.1
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 4.7e-52 208.8 120 84.2
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 1.8e-51 206.8 121 84.3
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 8.8e-51 204.5 178 61.8
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 1.5e-50 203.8 209 54.5
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 9.7e-50 201.1 117 81.2
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 2.2e-49 199.9 177 56.5
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 8.2e-49 198.0 257 42.8
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 1.1e-48 197.6 158 65.2
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 1.1e-45 187.6 169 59.8
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 3.2e-45 186.0 125 69.6
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 1.1e-42 177.6 219 46.1
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 2.0e-42 176.8 104 78.8
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 9.4e-37 157.9 216 44.4
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 6.8e-35 151.8 186 44.1
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 3.4e-34 149.4 179 51.4
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 8.3e-33 144.8 295 35.9
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 1.6e-31 140.6 179 46.9
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 6.8e-27 125.2 81 76.5
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 6.3e-25 118.6 151 48.3
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.8e-24 117.1 124 55.6
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 7.0e-24 115.2 75 74.7
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 1.5e-21 107.5 64 78.1
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 4.7e-20 102.4 106 52.8
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 6.1e-20 102.1 168 38.7
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 8.0e-20 101.7 67 74.6
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 8.0e-20 101.7 103 50.5
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 6.8e-19 98.6 110 51.8
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 8.9e-19 98.2 81 60.5
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 1.5e-18 97.4 103 48.5
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 1.3e-17 94.4 59 78.0
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 1.8e-16 90.5 173 38.7
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 4.6e-15 85.9 239 32.2
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 8.6e-14 81.6 143 39.2
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 5.6e-13 79.0 78 47.4
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 5.6e-13 79.0 109 47.7
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 2.3e-11 73.6 95 45.3
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 1.7e-09 67.4 46 69.6
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 1.7e-09 67.4 151 34.4
BolC8t48554H Brassica oleracea HOM05D000001 ORTHO05D004986 4.9e-09 65.9 53 64.2
QL05p059782 Quercus lobata HOM05D000003 ORTHO05D000006 1.7e-06 57.4 36 77.8
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 2.3e-06 57.0 41 63.4
Nitab4.5_0000001g0510 Nicotiana tabacum HOM05D000001 ORTHO05D004986 3.9e-06 56.2 34 67.6


User provided reference genes

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