Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 7.9e-108 393.7 183 100.0
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 1.3e-89 333.2 162 93.8
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 3.0e-70 268.9 163 75.5
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 1.1e-67 260.4 162 72.8
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 3.7e-65 251.9 163 68.7
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 1.1e-61 240.4 161 65.8
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 1.6e-60 236.5 160 65.6
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 8.1e-60 234.2 159 65.4
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 8.1e-60 234.2 160 62.5
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 1.1e-59 233.8 159 64.8
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 1.8e-59 233.0 159 66.7
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 4.0e-59 231.9 159 62.3
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 8.9e-59 230.7 159 64.8
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 1.2e-58 230.3 159 65.4
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 2.0e-58 229.6 161 63.4
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 3.4e-58 228.8 160 61.9
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 3.4e-58 228.8 161 64.0
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 5.8e-58 228.0 161 64.0
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 7.5e-58 227.6 161 62.7
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 7.5e-58 227.6 161 63.4
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 1.7e-57 226.5 159 62.9
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 2.2e-57 226.1 160 62.5
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 2.9e-57 225.7 166 59.6
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 3.7e-57 225.3 161 62.7
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 3.7e-57 225.3 161 64.0
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 3.7e-57 225.3 161 62.7
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 4.9e-57 224.9 161 62.7
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 6.4e-57 224.6 162 61.1
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 1.4e-56 223.4 161 61.5
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 1.4e-56 223.4 161 60.2
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 1.4e-56 223.4 159 64.8
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 2.4e-56 222.6 159 63.5
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 3.2e-56 222.2 163 62.6
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 7.1e-56 221.1 160 61.9
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 7.1e-56 221.1 160 62.5
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 7.1e-56 221.1 162 63.6
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 1.6e-55 219.9 160 61.2
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 2.1e-55 219.5 161 64.0
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 2.1e-55 219.5 161 62.7
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 6.0e-55 218.0 161 60.2
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 6.0e-55 218.0 161 62.7
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 6.0e-55 218.0 161 62.7
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 7.8e-55 217.6 160 61.9
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 1.0e-54 217.2 159 62.3
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 1.0e-54 217.2 159 60.4
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 1.3e-54 216.9 167 59.3
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 1.3e-54 216.9 163 62.6
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.7e-54 216.5 161 63.4
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 2.3e-54 216.1 164 59.8
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 2.3e-54 216.1 159 59.7
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 3.0e-54 215.7 161 62.1
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 3.0e-54 215.7 164 60.4
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 5.1e-54 214.9 161 62.7
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 6.6e-54 214.5 161 63.4
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 8.6e-54 214.2 161 60.2
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 1.5e-53 213.4 159 61.6
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 2.5e-53 212.6 161 59.6
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 3.3e-53 212.2 159 61.6
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 4.3e-53 211.8 163 58.9
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 4.3e-53 211.8 161 62.7
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 5.6e-53 211.5 159 60.4
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 9.5e-53 210.7 161 59.0
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 1.6e-52 209.9 161 62.1
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 2.1e-52 209.5 163 60.1
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 2.1e-52 209.5 160 60.0
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 2.8e-52 209.1 161 57.8
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 2.8e-52 209.1 161 59.0
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 4.7e-52 208.4 170 57.1
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 4.7e-52 208.4 175 56.6
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 6.2e-52 208.0 178 55.1
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 8.1e-52 207.6 159 61.0
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.1e-51 207.2 160 61.9
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 1.4e-51 206.8 161 59.6
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 2.4e-51 206.1 160 61.2
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 3.1e-51 205.7 154 61.7
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 5.2e-51 204.9 166 59.6
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 5.2e-51 204.9 154 63.0
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 5.2e-51 204.9 168 59.5
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 8.9e-51 204.1 162 56.8
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 1.2e-50 203.8 167 59.9
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.5e-50 203.4 169 58.0
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 2.0e-50 203.0 158 58.9
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 2.0e-50 203.0 159 57.9
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 2.0e-50 203.0 161 59.6
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 2.0e-50 203.0 163 55.2
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 9.9e-50 200.7 164 54.9
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 1.3e-49 200.3 159 61.0
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 1.3e-49 200.3 161 58.4
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 1.7e-49 199.9 159 57.9
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 8.4e-49 197.6 168 57.7
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 8.4e-49 197.6 161 57.8
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 1.1e-48 197.2 159 60.4
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 1.1e-48 197.2 159 60.4
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 1.4e-48 196.8 172 53.5
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 2.4e-48 196.1 152 55.9
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 4.1e-48 195.3 162 58.6
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 5.4e-48 194.9 170 57.1
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 5.4e-48 194.9 170 57.1
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 5.4e-48 194.9 162 54.3
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 7.1e-48 194.5 162 53.1
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 7.1e-48 194.5 158 58.2
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 1.6e-47 193.4 160 52.5
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 2.1e-47 193.0 172 53.5
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 3.5e-47 192.2 159 56.6
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 1.5e-45 186.8 143 61.5
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 4.3e-45 185.3 161 53.4
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 2.8e-44 182.6 159 52.2
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 6.2e-44 181.4 149 55.0
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 4.0e-43 178.7 162 51.9
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 1.9e-40 169.9 163 52.8
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 5.4e-40 168.3 160 48.1
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.7e-39 166.0 160 47.5
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.9e-38 162.2 159 46.5
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.9e-38 162.2 155 47.7
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 1.1e-37 160.6 116 62.9
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 1.5e-37 160.2 119 61.3
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.3e-36 157.1 144 49.3
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 3.1e-35 152.5 111 59.5
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 5.3e-35 151.8 111 57.7
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 6.9e-35 151.4 112 58.0
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 2.6e-34 149.4 120 57.5
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 3.4e-34 149.1 167 46.1
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 7.9e-31 137.9 128 47.7
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 5.1e-30 135.2 118 54.2
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 5.6e-29 131.7 117 50.4
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 3.7e-28 129.0 162 41.4
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 6.2e-28 128.3 160 40.0
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 3.1e-27 125.9 94 58.5
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 5.5e-24 115.2 161 39.8
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 9.3e-24 114.4 161 37.9
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 1.8e-22 110.2 91 54.9
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.8e-19 100.1 97 44.3
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 7.1e-16 88.2 178 31.5
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 2.1e-15 86.7 68 58.8
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.5e-13 80.5 111 39.6
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 8.5e-09 64.7 44 68.2
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 2.5e-08 63.2 47 61.7
SMO330G0037 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.2e-08 62.4 53 47.2
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 1.6e-07 60.5 44 61.4
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 4.6e-07 58.9 44 59.1


User provided reference genes

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