Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 8.6e-108 393.7 198 100.0
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 1.3e-100 369.8 194 97.4
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 4.9e-79 298.1 190 78.4
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 5.4e-78 294.7 196 75.5
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 3.3e-75 285.4 194 70.6
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 3.3e-75 285.4 196 70.9
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 7.3e-75 284.3 192 71.4
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 1.3e-74 283.5 196 70.9
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 2.1e-74 282.7 187 73.8
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 2.8e-74 282.3 190 72.1
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 2.8e-74 282.3 196 71.4
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 2.8e-74 282.3 194 70.1
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 3.6e-74 282.0 192 68.8
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 4.8e-74 281.6 196 73.0
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 6.2e-74 281.2 190 75.3
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 6.2e-74 281.2 196 70.4
CARHR091380 Cardamine hirsuta HOM05D005658 ORTHO05D006989 8.1e-74 280.8 197 70.6
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 8.1e-74 280.8 196 69.4
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 8.1e-74 280.8 187 73.3
Aqoxy7G01547 Aquilegia oxysepala HOM05D005658 ORTHO05D006989 1.4e-73 280.0 194 72.2
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 1.4e-73 280.0 190 73.7
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 1.4e-73 280.0 196 69.9
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 1.4e-73 280.0 194 69.6
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 1.4e-73 280.0 196 71.9
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 1.8e-73 279.6 196 71.9
Lalb_Chr04g0262841 Lupinus albus HOM05D005658 ORTHO05D006989 1.8e-73 279.6 195 69.2
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 3.1e-73 278.9 196 71.9
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 3.1e-73 278.9 196 71.9
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 3.1e-73 278.9 198 70.7
PGSC0003DMG400002629 Solanum tuberosum HOM05D005658 ORTHO05D006989 3.1e-73 278.9 194 68.6
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 4.0e-73 278.5 198 71.7
Thhalv10021560m.g Eutrema salsugineum HOM05D005658 ORTHO05D006989 5.3e-73 278.1 197 70.1
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 6.9e-73 277.7 198 69.2
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 9.0e-73 277.3 198 67.7
MBI04_g04855_MAGBIO Magnolia biondii HOM05D005658 ORTHO05D006989 1.2e-72 276.9 188 72.9
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 1.2e-72 276.9 196 70.9
Duzib235G1329 Durio zibethinus HOM05D005658 ORTHO05D006989 1.5e-72 276.6 196 71.9
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 2.0e-72 276.2 190 72.6
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 2.6e-72 275.8 193 71.5
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 2.6e-72 275.8 198 71.2
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 3.4e-72 275.4 196 70.4
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 4.5e-72 275.0 196 70.4
ECA234G0336 Erigeron canadensis HOM05D005658 ORTHO05D006989 5.8e-72 274.6 193 71.0
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 5.8e-72 274.6 196 68.9
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 2.2e-71 272.7 186 70.4
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 2.9e-71 272.3 183 72.1
Actinidia08995 Actinidia chinensis HOM05D005658 ORTHO05D006989 4.9e-71 271.6 187 71.7
AT3G16190 Arabidopsis thaliana HOM05D005658 ORTHO05D006989 4.9e-71 271.6 197 67.5
Migut.D01014 Erythranthe guttata HOM05D005658 ORTHO05D006989 4.9e-71 271.6 193 67.9
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 4.9e-71 271.6 196 68.4
HanXRQChr10g0313501 Helianthus annuus HOM05D005658 ORTHO05D006989 6.4e-71 271.2 189 72.5
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 6.4e-71 271.2 194 67.5
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 8.4e-71 270.8 196 68.9
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 1.4e-70 270.0 190 67.4
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 1.9e-70 269.6 195 68.2
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 2.4e-70 269.2 196 68.4
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 7.1e-70 267.7 197 67.0
VMungo0331G0597 Vigna mungo HOM05D005658 ORTHO05D006989 7.1e-70 267.7 196 68.9
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 9.3e-70 267.3 196 69.9
AL3G28880 Arabidopsis lyrata HOM05D005658 ORTHO05D006989 3.5e-69 265.4 197 66.0
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 3.5e-69 265.4 193 66.8
BcaC09g48588 Brassica carinata HOM05D005658 ORTHO05D006989 4.6e-69 265.0 197 66.5
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 4.6e-69 265.0 193 67.4
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 6.0e-69 264.6 193 69.4
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 6.0e-69 264.6 198 66.2
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 6.0e-69 264.6 190 68.9
Phvul.010G147800 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 3.9e-68 261.9 196 67.3
A05p33310 Brassica napus HOM05D005658 ORTHO05D006989 5.1e-68 261.5 198 66.7
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 5.1e-68 261.5 190 68.4
Dinv38010 Davidia involucrata HOM05D005658 ORTHO05D006989 2.5e-67 259.2 166 75.9
C05p50310 Brassica napus HOM05D005658 ORTHO05D006989 4.3e-67 258.5 198 65.7
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 4.3e-67 258.5 187 69.0
DCAR_016205 Daucus carota HOM05D005658 ORTHO05D006989 4.3e-67 258.5 196 70.4
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 7.4e-67 257.7 190 69.5
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 2.8e-66 255.8 193 66.8
BraA05t22156Z Brassica rapa HOM05D005658 ORTHO05D006989 3.7e-66 255.4 206 64.6
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 3.7e-66 255.4 193 64.8
Sc12g0009500 Simmondsia chinensis HOM05D005658 ORTHO05D006989 6.2e-66 254.6 177 70.1
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 6.2e-66 254.6 181 68.5
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 2.4e-65 252.7 208 63.0
SEGI_12338 Sequoiadendron giganteum HOM05D005658 ORTHO05D006989 3.1e-65 252.3 185 66.5
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 4.0e-65 251.9 190 66.8
arahy.Tifrunner.gnm1.ann1.JS39C6 Arachis hypogaea HOM05D005658 ORTHO05D006989 1.2e-64 250.4 183 69.4
Os02g0276400 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 1.2e-64 250.4 185 68.6
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 1.5e-64 250.0 177 65.5
FAN05G4480 Fragaria x ananassa HOM05D005658 ORTHO05D006989 3.4e-64 248.8 172 73.3
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 2.2e-63 246.1 189 67.7
Ca_20421_v3 Cicer arietinum L. HOM05D005658 ORTHO05D006989 3.8e-63 245.4 171 69.6
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 6.5e-63 244.6 171 70.2
Lsat_1_v5_gn_5_131001 Lactuca sativa HOM05D000012 ORTHO05D000804 1.1e-62 243.8 167 71.9
Lj9A509T93 Lonicera japonica HOM05D005658 ORTHO05D006989 2.5e-62 242.7 165 73.3
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 5.5e-62 241.5 172 68.6
QL05p021437 Quercus lobata HOM05D005658 ORTHO05D006989 9.3e-62 240.7 170 69.4
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 9.3e-62 240.7 175 69.1
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 1.6e-61 240.0 167 70.7
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 2.7e-61 239.2 170 70.6
ClCG09G001890 Citrullus lanatus HOM05D005658 ORTHO05D006989 2.7e-61 239.2 193 61.7
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 4.6e-61 238.4 173 67.6
Carub.0003s1594 Capsella rubella HOM05D005658 ORTHO05D006989 6.0e-61 238.0 165 69.7
CsaV3_7G033450 Cucumis sativus L. HOM05D005658 ORTHO05D006989 6.0e-61 238.0 190 61.6
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 6.0e-61 238.0 172 69.8
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 8.7e-60 234.2 175 68.0
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 1.1e-59 233.8 169 68.6
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 4.3e-59 231.9 166 68.1
Sed0023183 Sechium edule HOM05D005658 ORTHO05D006989 4.3e-59 231.9 192 58.9
SMO147G0229 Selaginella moellendorffii HOM05D005658 ORTHO05D006989 1.3e-58 230.3 187 62.6
MELO3C027085.2 Cucumis melo HOM05D005658 ORTHO05D006989 1.6e-58 229.9 193 61.1
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 2.1e-58 229.6 177 65.5
COL.COLO4_30457 Corchorus olitorius HOM05D005658 ORTHO05D006989 6.3e-58 228.0 170 68.2
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 6.3e-58 228.0 170 67.6
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 3.1e-57 225.7 161 68.3
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 4.1e-57 225.3 196 58.7
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 1.5e-56 223.4 170 63.5
AUR62016508 Chenopodium quinoa HOM05D005658 ORTHO05D006989 2.0e-56 223.0 189 63.0
COL.COLO4_18473 Corchorus olitorius HOM05D005658 ORTHO05D006989 2.6e-56 222.6 190 61.1
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 5.0e-55 218.4 195 59.0
TPR.G40810 Trifolium pratense HOM05D005658 ORTHO05D006989 1.4e-54 216.9 142 74.6
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 9.3e-54 214.2 188 56.9
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 1.2e-53 213.8 192 55.2
Psat7g255080 Pisum sativum HOM05D005658 ORTHO05D006989 4.6e-53 211.8 142 71.8
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 2.3e-52 209.5 188 55.3
Psat5g078240 Pisum sativum HOM05D005658 ORTHO05D006989 5.3e-49 198.4 196 54.1
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 2.9e-47 192.6 192 52.1
Nitab4.5_0003039g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 8.5e-47 191.0 145 66.2
Peaxi162Scf00015g00131 Petunia axillaris HOM05D005658 ORTHO05D006989 1.5e-43 180.3 197 51.8
Atru.chr1.3413 Acer truncatum HOM05D005658 ORTHO05D006989 2.0e-43 179.9 116 79.3
Haze_16345 Corylus avellana HOM05D003600 ORTHO05D004129 5.7e-43 178.3 119 74.8
Cpa.g.sc1241.2 Carica papaya HOM05D005658 ORTHO05D006989 9.7e-43 177.6 133 64.7
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 1.1e-38 164.1 184 45.7
Glyma.08G203700 Glycine max HOM05D005658 ORTHO05D006989 3.2e-38 162.5 120 66.7
AUR62011684 Chenopodium quinoa HOM05D005658 ORTHO05D006989 4.7e-37 158.7 114 66.7
Sed0018991 Sechium edule HOM05D005658 ORTHO05D006989 6.1e-37 158.3 133 58.6
Manes.11G037100 Manihot esculenta HOM05D005658 ORTHO05D006989 1.1e-30 137.5 171 47.4
CAN.G214.3 Capsicum annuum HOM05D005658 ORTHO05D006989 8.8e-20 101.3 87 60.9
QL02p037511 Quercus lobata HOM05D005658 ORTHO05D006989 2.0e-11 73.6 60 61.7
TPR.G1351 Trifolium pratense HOM05D005658 ORTHO05D006989 1.3e-10 70.9 58 55.2
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 4.1e-09 65.9 172 30.8
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 4.1e-09 65.9 176 29.5
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 7.0e-09 65.1 172 30.8
Sopen12g022580 Solanum pennellii HOM05D005658 ORTHO05D006989 9.2e-09 64.7 176 33.5
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 9.2e-09 64.7 172 29.1
MSTRG.12232 Avicennia marina HOM05D006499 ORTHO05D007874 1.2e-08 64.3 172 30.2
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 1.6e-08 63.9 171 29.2
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 2.0e-08 63.5 180 27.8
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 2.0e-08 63.5 189 28.6
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 2.0e-08 63.5 172 29.1
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 2.7e-08 63.2 180 28.3
Atru.chr1.3414 Acer truncatum HOM05D005658 ORTHO05D006989 4.5e-08 62.4 49 65.3
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 4.5e-08 62.4 174 28.7
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 7.7e-08 61.6 179 27.9
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 1.0e-07 61.2 172 29.1
vmacro04318 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 2.3e-07 60.1 172 27.9
Zm00001eb237290 Zea mays HOM05D005658 ORTHO05D006989 2.9e-07 59.7 50 60.0
arahy.Tifrunner.gnm1.ann1.U0P7JC Arachis hypogaea HOM05D000717 ORTHO05D000555 8.6e-07 58.2 173 28.9
Manes.15G079500 Manihot esculenta HOM05D006499 ORTHO05D007874 1.5e-06 57.4 170 26.5
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 1.5e-06 57.4 180 25.6
arahy.Tifrunner.gnm1.ann1.BULB93 Arachis hypogaea HOM05D006499 ORTHO05D007874 1.9e-06 57.0 173 28.9
Glyma.09G283200 Glycine max HOM05D006499 ORTHO05D007874 2.5e-06 56.6 172 28.5


User provided reference genes

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