Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 2175.6 1108 100.0
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 2098.6 1114 95.7
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 0.0e+00 1621.7 1118 73.1
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 0.0e+00 1536.2 1149 68.7
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1533.9 1116 69.0
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 0.0e+00 1495.7 1129 66.5
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 0.0e+00 1462.2 1117 66.4
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 0.0e+00 1456.4 1122 66.0
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 0.0e+00 1444.9 1119 65.1
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 0.0e+00 1426.8 1129 64.8
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1406.3 1120 63.6
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 0.0e+00 1395.2 1116 64.3
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 0.0e+00 1393.3 1117 63.0
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 0.0e+00 1387.9 1156 62.5
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 0.0e+00 1387.1 1122 63.7
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 0.0e+00 1386.3 1201 60.4
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 0.0e+00 1386.3 1113 63.1
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 0.0e+00 1380.5 1183 60.7
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 0.0e+00 1376.7 1117 63.1
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 0.0e+00 1372.1 1115 62.3
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1369.4 1118 62.5
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 0.0e+00 1369.4 1138 61.2
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 0.0e+00 1363.6 1067 65.0
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1363.6 1117 63.2
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 0.0e+00 1355.9 1115 61.4
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 0.0e+00 1355.1 1120 62.1
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1353.6 1114 62.0
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1353.2 1117 62.8
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1352.0 1114 61.9
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 0.0e+00 1347.0 1117 61.3
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 0.0e+00 1346.6 1128 61.4
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1346.3 1116 62.8
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 0.0e+00 1345.9 1116 61.3
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 0.0e+00 1340.9 1124 60.9
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 0.0e+00 1340.1 1119 61.6
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 0.0e+00 1337.8 1118 61.6
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 0.0e+00 1332.8 1118 61.5
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 0.0e+00 1330.9 1111 61.4
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1329.3 1117 60.2
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 0.0e+00 1328.9 1122 61.5
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 0.0e+00 1325.5 1119 60.7
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 0.0e+00 1320.4 1115 60.4
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 0.0e+00 1315.8 1127 61.0
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 0.0e+00 1311.6 1120 59.9
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 0.0e+00 1310.8 1183 57.9
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 0.0e+00 1309.3 1109 59.7
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1307.0 1116 59.1
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 0.0e+00 1304.7 1114 59.7
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 0.0e+00 1302.0 1117 60.2
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1301.6 1125 58.3
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 0.0e+00 1300.0 1121 60.5
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1299.6 1125 58.3
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 0.0e+00 1299.3 1107 60.3
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1299.3 1114 60.2
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1297.3 1123 60.1
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1294.6 1125 60.2
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1294.3 1115 60.0
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1292.7 1121 60.2
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1291.2 1121 60.2
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 0.0e+00 1289.2 1122 60.2
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1288.5 1131 59.2
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 0.0e+00 1288.1 1132 59.3
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1287.7 1103 59.7
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1286.2 1092 59.9
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1280.8 1175 57.4
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 0.0e+00 1280.4 1114 58.7
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1280.0 915 68.9
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1272.3 1092 59.6
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1271.9 1121 59.4
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 0.0e+00 1270.0 1175 58.4
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 0.0e+00 1269.2 1116 58.7
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1266.5 1123 58.1
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 0.0e+00 1263.1 1109 58.6
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 0.0e+00 1260.7 1136 58.8
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 0.0e+00 1258.0 1110 58.8
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1253.8 1106 58.6
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1253.8 1112 58.5
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1252.3 1115 58.3
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1249.6 1116 58.4
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1249.6 1116 58.4
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 0.0e+00 1243.0 1114 57.6
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1239.9 1106 58.6
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 0.0e+00 1239.9 1107 58.2
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 0.0e+00 1238.4 1106 58.7
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 0.0e+00 1237.2 1107 57.6
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 0.0e+00 1236.5 1105 58.5
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1228.8 1110 58.1
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 0.0e+00 1226.5 956 64.9
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1217.6 1112 57.5
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 0.0e+00 1216.8 1105 57.6
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1213.7 1112 57.5
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1210.7 1182 54.4
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 0.0e+00 1203.3 958 64.4
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1201.8 1119 56.5
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 0.0e+00 1201.8 1002 62.4
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 0.0e+00 1200.7 1107 56.6
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 0.0e+00 1195.6 1128 56.4
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 0.0e+00 1181.8 1088 56.6
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 0.0e+00 1173.7 1169 54.9
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 0.0e+00 1167.1 1020 59.6
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1155.6 1007 59.3
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1132.9 960 61.1
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 0.0e+00 1128.6 793 70.2
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1119.4 954 60.5
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 0.0e+00 1107.0 841 65.8
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 0.0e+00 1095.9 1150 51.3
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 4.3e-305 1051.6 905 59.8
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 4.4e-302 1041.6 1025 54.2
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 8.0e-296 1020.8 755 66.2
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 1.4e-292 1010.0 642 76.8
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.2e-283 980.3 1134 48.0
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 1.6e-275 953.4 1011 51.1
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 6.0e-267 924.9 1153 45.7
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 1.5e-265 920.2 798 59.3
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 1.9e-260 903.3 1100 46.3
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 3.0e-258 896.0 816 55.6
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 4.5e-206 722.6 981 43.2
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 6.2e-171 605.9 1106 36.9
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 6.4e-160 569.3 446 63.9
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 2.1e-150 537.7 456 58.6
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 1.1e-148 531.9 1127 34.3
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 6.9e-138 496.1 537 50.7
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 2.8e-123 447.6 330 65.2
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 4.7e-102 377.1 294 62.2
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 7.4e-100 369.8 949 28.8
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 3.4e-84 317.8 378 47.9
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 8.3e-83 313.2 519 39.7
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 4.0e-77 294.3 233 63.1
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 4.1e-66 257.7 382 40.3
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.5e-63 249.2 261 51.3
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 3.6e-62 244.6 258 51.6
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.5e-55 222.6 209 55.5
Actinidia36160 Actinidia chinensis HOM05D004846 ORTHO05D005630 7.3e-55 220.3 232 53.4
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 5.2e-53 214.2 223 51.6
Hma1.2p1_0279F.1_g112210 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 4.9e-51 207.6 210 55.7
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.4e-42 178.7 175 52.0
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.4e-42 178.7 175 52.0
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.4e-42 178.7 175 52.0
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 2.4e-42 178.7 378 35.4
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.1e-41 175.6 175 51.4
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.7e-41 175.3 175 51.4
Nn7g36110 Nelumbo nucifera HOM05D004846 ORTHO05D005630 7.8e-41 173.7 144 63.9
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.8e-38 165.2 243 40.7
C07p36330 Brassica napus HOM05D004846 ORTHO05D017504 7.6e-36 157.1 248 39.9
BolC7t44149H Brassica oleracea HOM05D004846 ORTHO05D017504 9.9e-36 156.8 248 39.9
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 1.2e-33 149.8 248 38.7
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 1.2e-33 149.8 359 31.8
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 3.5e-33 148.3 175 46.3
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 2.4e-26 125.6 235 36.2
SEGI_31417 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 1.1e-21 110.2 103 58.3
Eucgr.J00244 Eucalyptus grandis HOM05D004846 ORTHO05D005630 2.4e-21 109.0 130 46.9
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 3.1e-21 108.6 76 68.4
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 7.1e-18 97.4 296 27.4
Dinv00598 Davidia involucrata HOM05D004846 ORTHO05D005630 6.7e-16 90.9 77 59.7
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 9.6e-15 87.0 52 78.8
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 2.1e-14 85.9 58 63.8
Ca_14625_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.2e-09 70.1 73 50.7


User provided reference genes

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