Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 3.3e-300 1034.2 513 100.0
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 3.6e-283 977.6 544 90.1
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 1.6e-185 653.3 552 62.9
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 5.9e-177 624.8 546 62.3
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 8.0e-174 614.4 558 58.4
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 7.8e-169 597.8 557 58.0
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 3.0e-168 595.9 539 59.6
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 3.0e-168 595.9 539 60.9
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 1.1e-167 594.0 545 58.0
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 1.6e-166 590.1 542 60.1
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 2.8e-166 589.3 543 59.5
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 3.1e-165 585.9 544 57.5
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 5.2e-165 585.1 521 61.4
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 8.9e-165 584.3 545 58.9
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 3.7e-163 578.9 547 58.3
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 1.4e-162 577.0 545 58.3
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 7.1e-162 574.7 551 58.6
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 3.5e-161 572.4 547 56.7
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 6.0e-161 571.6 554 56.3
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 1.7e-160 570.1 562 55.3
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 2.3e-160 569.7 548 57.3
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 1.5e-159 567.0 573 54.6
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 1.9e-159 566.6 536 58.0
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 9.5e-159 564.3 521 58.3
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 1.4e-157 560.5 541 55.8
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 2.3e-157 559.7 542 57.4
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 6.8e-157 558.1 541 58.4
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 8.9e-157 557.8 550 55.8
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 2.0e-156 556.6 530 57.2
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 2.6e-156 556.2 541 57.3
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 3.4e-156 555.8 547 55.9
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 4.4e-156 555.4 543 56.9
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 4.4e-156 555.4 543 57.3
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 5.8e-156 555.1 540 55.4
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 7.6e-156 554.7 544 57.2
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 7.6e-156 554.7 553 55.0
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 1.7e-155 553.5 543 55.8
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 8.4e-155 551.2 514 58.2
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 8.4e-155 551.2 554 54.2
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 1.4e-154 550.4 540 55.9
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 2.4e-154 549.7 526 57.0
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 3.2e-154 549.3 540 55.7
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 5.4e-154 548.5 544 55.3
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 9.2e-154 547.7 557 54.2
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 1.2e-153 547.4 550 54.2
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 2.7e-153 546.2 538 55.9
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 3.5e-153 545.8 525 56.0
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 4.6e-153 545.4 543 54.9
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 6.0e-153 545.0 545 55.0
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 1.0e-152 544.3 537 57.5
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 1.0e-152 544.3 550 54.2
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 1.7e-152 543.5 551 55.2
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 1.7e-152 543.5 541 56.9
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 2.3e-152 543.1 548 55.5
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 3.3e-151 539.3 554 53.8
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 4.3e-151 538.9 553 53.7
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 9.6e-151 537.7 553 53.9
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 9.6e-151 537.7 549 53.7
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 1.2e-150 537.3 541 55.3
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.6e-150 537.0 531 55.6
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 2.1e-150 536.6 516 56.6
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 2.8e-150 536.2 554 53.6
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 3.6e-150 535.8 556 54.7
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 8.1e-150 534.6 554 54.3
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 1.1e-149 534.3 553 53.9
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 1.1e-149 534.3 550 54.4
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 1.4e-149 533.9 457 59.7
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 1.8e-149 533.5 521 56.2
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 1.8e-149 533.5 547 53.7
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 2.4e-149 533.1 558 53.8
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 3.1e-149 532.7 552 54.0
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 4.0e-149 532.3 531 55.2
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 5.2e-149 531.9 479 57.8
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 1.5e-148 530.4 554 53.4
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 5.8e-148 528.5 535 54.6
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 5.8e-148 528.5 553 54.2
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 2.2e-147 526.6 547 53.0
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 2.9e-147 526.2 548 53.6
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 4.9e-147 525.4 555 53.2
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 5.4e-146 521.9 533 55.2
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 9.3e-146 521.2 537 54.0
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 1.2e-145 520.8 560 53.8
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 1.6e-145 520.4 537 53.6
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 3.0e-144 516.2 525 54.5
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 8.7e-144 514.6 584 51.4
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 1.6e-142 510.4 519 56.6
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 2.4e-141 506.5 523 53.3
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 9.0e-141 504.6 566 49.8
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 3.4e-140 502.7 554 52.3
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 5.8e-140 501.9 531 51.2
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 2.2e-139 500.0 550 52.5
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 8.7e-136 488.0 507 54.0
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 1.9e-135 486.9 501 52.5
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 5.6e-135 485.3 620 47.4
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 2.8e-134 483.0 451 57.6
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 8.1e-134 481.5 490 52.0
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 1.8e-133 480.3 508 51.2
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 5.3e-133 478.8 494 52.4
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 9.0e-133 478.0 539 50.1
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 2.6e-132 476.5 496 54.0
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 3.4e-132 476.1 552 48.6
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 1.7e-131 473.8 564 48.9
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 2.2e-131 473.4 545 49.5
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 1.1e-130 471.1 519 52.2
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 2.7e-129 466.5 481 56.3
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 4.6e-129 465.7 574 46.5
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 7.9e-129 464.9 598 44.1
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 2.3e-128 463.4 523 51.2
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 2.3e-128 463.4 488 54.9
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 1.1e-127 461.1 452 52.2
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 2.1e-126 456.8 555 49.7
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 1.6e-121 440.7 464 49.1
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 1.5e-119 434.1 554 47.8
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 3.3e-119 433.0 544 45.0
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 6.3e-118 428.7 515 48.7
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 1.4e-114 417.5 447 51.2
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.5e-114 416.8 576 43.1
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.5e-114 416.8 576 43.1
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 7.2e-114 415.2 576 42.0
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 3.5e-113 412.9 532 44.9
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 7.9e-113 411.8 535 44.7
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.1e-109 401.4 582 41.4
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 8.8e-104 381.7 453 50.1
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 7.4e-103 378.6 509 43.6
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 9.4e-98 361.7 457 47.5
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 3.9e-96 356.3 498 45.4
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 7.0e-93 345.5 530 39.4
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 5.0e-91 339.3 484 45.5
Atru.chr7.2059 Acer truncatum HOM05D004583 ORTHO05D005469 3.2e-90 336.7 328 56.4
CDE02G1982 Ceratophyllum demersum HOM05D004583 ORTHO05D001336 1.3e-86 324.7 349 49.6
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 6.5e-83 312.4 698 33.0
Haze_21911 Corylus avellana HOM05D004583 ORTHO05D005469 5.2e-80 302.8 319 53.6
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 4.1e-77 293.1 465 40.4
MBI04_g32315_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 7.5e-71 272.3 166 73.5
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.6e-68 264.6 627 32.1
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 3.5e-68 263.5 604 32.9
Cpa.g.sc7.206 Carica papaya HOM05D004583 ORTHO05D005469 2.5e-66 257.3 166 69.9
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 3.4e-47 193.7 390 37.4
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 1.3e-46 191.8 198 47.5
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 3.5e-44 183.7 191 57.6
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 4.6e-44 183.3 160 64.4
Aqoxy6G01950 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.3e-43 181.8 275 42.2
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 3.0e-43 180.6 152 62.5
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 1.9e-42 177.9 156 61.5
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 1.9e-37 161.4 99 70.7
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 7.3e-34 149.4 165 49.1
Aqoxy6G01951 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 8.4e-30 136.0 94 66.0
Cpa.g.c37634 Carica papaya HOM05D004583 ORTHO05D005469 2.4e-29 134.4 256 38.3
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 1.2e-28 132.1 136 50.7
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 5.1e-27 126.7 132 48.5
MCO16G603 Micromonas commoda HOM05D004583 ORTHO05D005469 2.2e-22 111.3 166 36.1
HPP92_022972 Vanilla planifolia HOM05D004583 ORTHO05D005469 3.5e-20 104.0 167 43.1
PRCOL_00000859 Prasinoderma coloniale HOM05D004583 ORTHO05D005469 2.3e-19 101.3 180 35.0
Duzib150G0365 Durio zibethinus HOM05D004583 ORTHO05D005469 2.5e-18 97.8 68 66.2
Cpa.g.c46051 Carica papaya HOM05D004583 ORTHO05D005469 3.1e-08 64.3 39 66.7
Cre13.g585651 Chlamydomonas reinhardtii HOM05D004583 ORTHO05D005469 4.5e-07 60.5 117 37.6


User provided reference genes

Program Settings