Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 1.5e-275 952.2 488 100.0
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 2.4e-260 901.7 488 94.7
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 1.6e-168 596.7 498 65.5
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 1.1e-164 583.9 497 63.4
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 3.0e-162 575.9 495 61.2
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 2.8e-160 569.3 505 60.4
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 5.9e-158 561.6 501 61.3
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 7.7e-158 561.2 498 60.8
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 5.0e-157 558.5 498 60.2
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.9e-156 556.6 498 60.2
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 1.9e-156 556.6 498 60.2
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 1.2e-155 553.9 502 60.6
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 2.7e-155 552.7 501 60.1
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 1.8e-154 550.1 498 59.2
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 2.3e-154 549.7 497 60.8
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 1.1e-153 547.4 502 59.8
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 7.4e-153 544.7 500 59.8
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 1.7e-152 543.5 499 59.7
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 8.2e-152 541.2 447 64.4
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 1.4e-151 540.4 500 60.0
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 1.8e-151 540.0 476 61.3
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.8e-151 540.0 476 61.3
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.4e-151 539.7 498 58.6
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 5.3e-151 538.5 499 59.5
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 1.2e-150 537.3 505 58.8
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.2e-150 537.3 476 60.9
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 1.6e-150 537.0 498 59.2
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 1.3e-149 533.9 475 60.6
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.2e-149 533.1 476 60.7
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 2.2e-149 533.1 498 57.8
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 3.8e-149 532.3 498 57.6
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 5.0e-149 531.9 505 58.0
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 5.5e-148 528.5 498 59.2
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.7e-147 526.2 477 60.0
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 2.7e-147 526.2 497 58.6
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 6.1e-147 525.0 503 57.3
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 1.0e-146 524.2 500 58.2
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 6.7e-146 521.5 500 58.0
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 8.8e-146 521.2 499 56.1
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 2.0e-145 520.0 538 55.2
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 1.3e-144 517.3 509 57.6
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 1.3e-144 517.3 500 57.6
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 1.8e-143 513.5 500 56.6
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 2.4e-143 513.1 471 58.2
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 1.2e-142 510.8 476 57.6
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 1.2e-142 510.8 514 55.3
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 4.5e-142 508.8 497 56.1
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 5.9e-142 508.4 476 57.4
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 5.9e-142 508.4 489 57.3
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 1.0e-141 507.7 500 56.0
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 4.2e-140 502.3 495 55.8
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 1.2e-139 500.7 503 55.9
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 4.0e-138 495.7 499 56.3
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 8.8e-138 494.6 402 64.7
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 1.5e-137 493.8 476 55.7
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 2.2e-136 490.0 497 54.7
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 1.1e-135 487.6 477 55.8
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 4.1e-135 485.7 477 55.6
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 1.0e-133 481.1 502 53.6
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 1.5e-132 477.2 478 55.0
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 3.2e-132 476.1 567 50.6
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 1.8e-130 470.3 497 53.3
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 2.3e-130 469.9 473 55.0
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 1.1e-127 461.1 522 52.3
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 3.1e-127 459.5 498 54.0
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 9.2e-127 458.0 447 54.8
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 1.2e-126 457.6 517 52.6
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.6e-126 457.2 459 55.1
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 5.9e-126 455.3 485 53.0
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 2.5e-124 449.9 441 55.3
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 3.6e-123 446.0 475 49.3
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 1.4e-119 434.1 383 61.6
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 3.2e-119 433.0 406 59.1
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 8.6e-117 424.9 520 49.4
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 1.5e-116 424.1 446 51.6
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 7.0e-111 405.2 499 49.5
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 1.1e-106 391.3 425 51.8
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 3.0e-101 373.2 338 59.2
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 2.8e-99 366.7 388 52.6
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 2.0e-97 360.5 483 45.3
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 4.3e-92 342.8 329 56.5
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 3.1e-90 336.7 315 58.7
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 3.8e-88 329.7 432 45.8
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 5.4e-79 299.3 458 42.8
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 4.5e-73 279.6 434 38.5
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.3e-72 278.1 452 39.2
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 2.9e-72 276.9 432 38.0
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 3.8e-72 276.6 344 50.3
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 1.9e-71 274.2 437 38.0
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 7.1e-71 272.3 452 37.8
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 2.1e-70 270.8 448 38.4
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 2.7e-70 270.4 427 38.6
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.3e-69 268.1 415 40.0
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.8e-69 267.7 485 37.3
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 5.1e-69 266.2 420 40.5
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.5e-68 263.8 452 38.3
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 9.6e-68 261.9 421 40.1
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 3.7e-67 260.0 429 37.8
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 4.8e-67 259.6 439 37.1
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 1.1e-66 258.5 452 39.6
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.4e-66 257.3 418 40.0
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.4e-66 257.3 403 40.9
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 9.0e-66 255.4 424 39.6
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 1.5e-65 254.6 435 37.0
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 2.0e-65 254.2 424 39.4
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 2.6e-65 253.8 380 41.6
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 2.6e-65 253.8 430 38.6
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 5.8e-65 252.7 411 39.7
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 2.2e-64 250.8 411 39.2
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 2.2e-64 250.8 428 39.3
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 4.9e-64 249.6 411 39.2
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 5.5e-63 246.1 419 39.1
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 7.1e-63 245.7 443 38.6
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 2.7e-62 243.8 419 38.9
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.9e-60 237.7 370 41.6
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 4.8e-59 233.0 249 54.6
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 6.3e-59 232.6 420 37.1
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 6.9e-58 229.2 434 35.3
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 9.0e-58 228.8 427 36.5
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 2.0e-57 227.6 431 36.0
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 2.6e-57 227.3 201 61.2
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 1.0e-56 225.3 470 35.7
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 5.0e-56 223.0 349 39.3
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 6.5e-56 222.6 392 37.0
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 7.9e-54 215.7 567 31.7
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 1.1e-50 205.3 230 49.6
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.4e-50 204.1 395 35.4
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 1.2e-49 201.8 402 35.6
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 3.3e-44 183.7 375 34.7
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 8.2e-43 179.1 399 32.6
Cpa.g.sc52.48 Carica papaya HOM05D003798 ORTHO05D004652 2.4e-42 177.6 166 58.4
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.2e-38 165.2 389 30.8
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 2.7e-38 164.1 152 53.9
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 3.0e-37 160.6 272 38.2
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 8.2e-35 152.5 235 39.6
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 3.5e-33 147.1 386 28.5
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.3e-32 145.2 268 37.3
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.6e-30 138.3 267 39.0
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 1.5e-28 131.7 111 56.8
Nitab4.5_0024519g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 1.5e-28 131.7 213 40.4
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 8.2e-27 125.9 187 39.6
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 1.4e-26 125.2 187 39.0
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 4.1e-26 123.6 150 48.0
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 9.1e-26 122.5 89 67.4
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 6.5e-24 116.3 122 53.3
Lj2A1170T18 Lonicera japonica HOM05D003798 ORTHO05D004652 5.5e-23 113.2 189 41.3
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 1.2e-22 112.1 145 42.8
Actinidia24901 Actinidia chinensis HOM05D003798 ORTHO05D004652 8.8e-21 105.9 262 34.0
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 2.6e-20 104.4 374 29.1
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.2e-19 101.3 122 50.0
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 5.9e-17 93.2 116 40.5
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 1.1e-15 89.0 218 33.5
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 1.5e-15 88.6 58 72.4
BcaC04g21277 Brassica carinata HOM05D040525 ORTHO05D023659 3.2e-15 87.4 294 29.6
Aqoxy1G03386 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 7.2e-15 86.3 85 55.3
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.2e-14 85.5 177 33.9
HanXRQChr10g0281951 Helianthus annuus HOM05D003798 ORTHO05D006066 1.0e-13 82.4 65 56.9
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 6.8e-13 79.7 89 52.8
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 1.2e-12 79.0 144 36.1
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.6e-12 77.8 87 49.4
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 3.4e-12 77.4 114 38.6
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 4.4e-12 77.0 318 28.0
Lsat_1_v5_gn_4_80681 Lactuca sativa HOM05D003798 ORTHO05D004652 7.5e-12 76.3 59 61.0
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 2.8e-11 74.3 137 37.2
Thhalv10029382m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.4e-10 72.0 148 33.8
arahy.Tifrunner.gnm1.ann1.E8A0WP Arachis hypogaea HOM05D003798 ORTHO05D021523 1.8e-10 71.6 60 60.0
Hma1.2p1_1168F.1_g263140 Hydrangea macrophylla HOM05D003798 ORTHO05D004652 1.8e-10 71.6 56 64.3
BcaB05g23891 Brassica carinata HOM05D003798 ORTHO05D004652 2.4e-10 71.2 122 35.2
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 2.4e-10 71.2 129 32.6
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 5.4e-10 70.1 61 55.7
arahy.Tifrunner.gnm1.ann1.FYU6J1 Arachis hypogaea HOM05D000331 ORTHO05D021523 7.0e-10 69.7 61 57.4
Rhsim02G0147100 Rhododendron simsii HOM05D003798 ORTHO05D004652 9.2e-10 69.3 85 44.7
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 2.0e-09 68.2 81 46.9
Lsat_1_v5_gn_1_5801 Lactuca sativa HOM05D003798 ORTHO05D004652 1.3e-08 65.5 91 46.2
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 1.5e-07 62.0 134 35.8
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 3.6e-06 57.4 79 46.8
Medtr7g094400 Medicago truncatula HOM05D003798 ORTHO05D004652 6.1e-06 56.6 41 63.4
AL2G38120 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 8.0e-06 56.2 120 27.5


User provided reference genes

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