Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 5.0e-140 501.1 257 100.0
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 8.2e-119 430.6 235 94.9
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 6.1e-114 414.5 235 91.1
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 3.4e-112 408.7 235 88.9
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 1.1e-107 393.7 241 86.3
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 6.6e-92 341.3 235 72.3
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 1.3e-87 327.0 234 69.7
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 5.4e-86 321.6 246 69.1
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 7.0e-86 321.2 236 69.5
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 1.2e-85 320.5 228 73.7
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 1.6e-85 320.1 234 70.5
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 8.6e-84 314.3 236 70.3
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 4.3e-83 312.0 257 63.4
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 5.6e-83 311.6 237 70.0
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 5.6e-83 311.6 236 68.2
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 2.1e-82 309.7 236 65.7
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 3.6e-82 308.9 237 69.6
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 3.6e-82 308.9 236 69.1
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 6.2e-82 308.1 225 72.0
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 6.2e-82 308.1 221 72.4
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 8.1e-82 307.8 237 69.2
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 8.1e-82 307.8 237 69.6
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 1.4e-81 307.0 235 69.4
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 3.1e-81 305.8 235 65.5
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 5.2e-81 305.1 237 69.6
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 8.9e-81 304.3 235 66.0
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 8.9e-81 304.3 225 70.2
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 1.2e-80 303.9 237 67.5
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.5e-80 303.5 224 67.9
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 2.0e-80 303.1 237 66.7
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 2.6e-80 302.8 235 67.2
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 2.6e-80 302.8 235 67.7
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 4.4e-80 302.0 220 71.8
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 4.4e-80 302.0 235 65.1
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 5.8e-80 301.6 236 67.8
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 7.5e-80 301.2 236 68.2
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 1.3e-79 300.4 236 67.8
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 1.3e-79 300.4 235 64.7
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.7e-79 300.1 237 68.4
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 1.7e-79 300.1 220 68.6
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 2.2e-79 299.7 235 65.5
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 2.9e-79 299.3 240 65.4
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 3.7e-79 298.9 237 66.2
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 4.9e-79 298.5 218 72.0
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 6.4e-79 298.1 236 66.1
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 1.9e-78 296.6 224 67.9
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 2.4e-78 296.2 234 65.0
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 3.2e-78 295.8 236 65.7
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 3.2e-78 295.8 235 64.7
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 4.1e-78 295.4 236 65.3
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 5.4e-78 295.0 235 64.3
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 5.4e-78 295.0 235 63.8
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 7.1e-78 294.7 235 66.0
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 7.1e-78 294.7 242 64.5
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 1.2e-77 293.9 224 67.0
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 2.1e-77 293.1 225 65.3
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 2.1e-77 293.1 236 65.3
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 2.1e-77 293.1 235 63.4
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 2.1e-77 293.1 235 63.8
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 2.7e-77 292.7 237 63.7
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 4.6e-77 292.0 233 64.8
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 6.0e-77 291.6 236 66.1
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 6.0e-77 291.6 233 64.4
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 7.8e-77 291.2 239 64.0
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 1.0e-76 290.8 241 63.1
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 1.0e-76 290.8 221 67.0
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 1.0e-76 290.8 255 62.4
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 1.0e-76 290.8 245 63.3
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 8.6e-76 287.7 213 67.6
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 1.1e-75 287.3 220 69.1
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 1.1e-75 287.3 217 70.0
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 1.5e-75 287.0 236 64.0
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 1.5e-75 287.0 241 61.8
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 1.9e-75 286.6 236 64.4
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 2.5e-75 286.2 235 62.1
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 2.5e-75 286.2 231 61.9
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 2.5e-75 286.2 222 66.2
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 2.5e-75 286.2 217 65.9
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 4.3e-75 285.4 226 65.9
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 4.3e-75 285.4 235 62.6
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 5.6e-75 285.0 226 65.5
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 5.6e-75 285.0 226 65.5
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 7.3e-75 284.6 226 65.0
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 9.5e-75 284.3 293 56.0
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 1.6e-74 283.5 224 64.7
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 2.1e-74 283.1 233 64.4
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 2.8e-74 282.7 220 64.5
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 2.8e-74 282.7 232 61.6
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 2.8e-74 282.7 223 67.3
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 8.1e-74 281.2 227 64.3
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 8.1e-74 281.2 220 65.5
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 1.1e-73 280.8 239 61.5
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 1.1e-73 280.8 234 65.4
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 1.4e-73 280.4 220 67.3
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 2.3e-73 279.6 223 65.9
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 3.1e-73 279.3 231 60.6
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 3.1e-73 279.3 231 60.6
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 3.1e-73 279.3 217 68.2
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 4.0e-73 278.9 257 59.5
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 6.8e-73 278.1 235 62.1
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 6.8e-73 278.1 217 64.1
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 6.8e-73 278.1 224 65.6
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 8.9e-73 277.7 235 62.1
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.0e-72 276.6 207 69.1
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 3.4e-72 275.8 255 60.8
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 4.4e-72 275.4 203 68.0
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 4.4e-72 275.4 219 66.2
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 9.9e-72 274.2 235 62.1
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 9.9e-72 274.2 223 62.8
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 8.4e-71 271.2 213 65.7
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.2e-70 269.2 234 62.8
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 4.1e-70 268.9 217 62.2
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 4.6e-69 265.4 266 57.5
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 3.9e-68 262.3 223 64.6
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 1.1e-67 260.8 145 91.7
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 1.9e-67 260.0 236 61.4
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 4.3e-67 258.8 317 47.3
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 4.7e-66 255.4 215 62.3
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 4.0e-65 252.3 236 58.5
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 8.9e-65 251.1 170 74.1
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.2e-64 250.8 238 59.2
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 2.2e-63 246.5 170 73.5
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 2.2e-63 246.5 202 64.4
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 8.7e-60 234.6 221 59.3
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 5.6e-59 231.9 166 71.1
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 2.1e-58 229.9 236 55.5
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 2.8e-58 229.6 215 60.0
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 7.6e-56 221.5 226 52.7
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 8.4e-55 218.0 228 49.1
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.1e-54 217.6 176 63.6
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 1.6e-53 213.8 176 56.8
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 3.5e-53 212.6 235 50.6
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 2.3e-52 209.9 120 84.2
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 3.9e-52 209.1 130 80.8
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 2.5e-51 206.5 209 55.5
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 2.5e-51 206.5 220 52.3
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 6.2e-50 201.8 180 62.2
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 3.4e-48 196.1 117 81.2
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 5.8e-48 195.3 257 42.8
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 3.8e-47 192.6 158 65.8
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 8.4e-47 191.4 177 55.4
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 5.5e-46 188.7 169 60.4
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 6.7e-44 181.8 125 71.2
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 5.6e-43 178.7 219 47.0
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 4.8e-42 175.6 104 80.8
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 1.8e-36 157.1 238 42.0
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 1.5e-35 154.1 186 45.2
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 1.4e-33 147.5 295 35.9
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 1.2e-32 144.4 179 51.4
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 4.6e-29 132.5 179 44.7
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 1.6e-26 124.0 81 77.8
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 6.9e-25 118.6 124 55.6
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 2.0e-24 117.1 151 47.7
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 3.4e-24 116.3 75 76.0
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 1.0e-20 104.8 67 76.1
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 5.1e-20 102.4 62 80.6
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 2.6e-19 100.1 106 51.9
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 3.3e-19 99.8 103 49.5
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 1.3e-18 97.8 112 50.9
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 6.3e-18 95.5 120 43.3
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 1.1e-17 94.7 168 37.5
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 1.1e-17 94.7 59 78.0
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 3.1e-17 93.2 81 59.3
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 5.9e-16 89.0 172 36.0
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 6.5e-15 85.5 226 33.2
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 1.0e-12 78.2 78 47.4
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 1.4e-12 77.8 90 51.1
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 1.8e-12 77.4 143 39.2
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 1.3e-10 71.2 95 44.2
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 7.0e-09 65.5 46 67.4
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 7.0e-09 65.5 174 31.0
BolC8t48554H Brassica oleracea HOM05D000001 ORTHO05D004986 1.2e-08 64.7 52 65.4
QL05p059782 Quercus lobata HOM05D000003 ORTHO05D000006 2.9e-07 60.1 36 77.8
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 9.4e-06 55.1 41 61.0
Nitab4.5_0000001g0510 Nicotiana tabacum HOM05D000001 ORTHO05D004986 9.4e-06 55.1 34 67.6


User provided reference genes

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