Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G1477 Papaver somniferum HOM05D005562 ORTHO05D007785 8.4e-224 780.0 390 100.0
PSO170G1474 Papaver somniferum HOM05D005562 ORTHO05D007785 5.6e-220 767.3 390 98.2
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 5.7e-172 607.8 404 75.5
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 3.7e-171 605.1 404 74.8
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 5.3e-170 601.3 404 74.5
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 2.9e-168 595.5 392 73.7
Atru.chr5.2830 Acer truncatum HOM05D005562 ORTHO05D007785 1.1e-167 593.6 405 73.6
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 1.5e-167 593.2 407 73.2
FAN27G1497 Fragaria x ananassa HOM05D005562 ORTHO05D007785 7.2e-167 590.9 397 74.1
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 4.7e-166 588.2 394 73.4
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 1.8e-165 586.3 401 72.8
Eucgr.I01182 Eucalyptus grandis HOM05D005562 ORTHO05D007785 4.0e-165 585.1 401 72.3
FvH4_2g07021 Fragaria vesca HOM05D005562 ORTHO05D007785 8.8e-165 583.9 394 73.9
RcHm_v2.0_Chr6g0259381 Rosa chinensis HOM05D005562 ORTHO05D007785 4.4e-164 581.6 391 73.7
QL11p038618 Quercus lobata HOM05D005562 ORTHO05D007785 7.5e-164 580.9 393 72.5
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 1.3e-163 580.1 374 77.0
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 1.3e-163 580.1 404 72.0
MD00G1050500 Malus domestica HOM05D005562 ORTHO05D007785 6.3e-163 577.8 394 72.1
Thecc.02G095000 Theobroma cacao HOM05D005562 ORTHO05D007785 6.3e-163 577.8 401 71.6
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 1.4e-162 576.6 412 70.6
Duzib248G1341 Durio zibethinus HOM05D005562 ORTHO05D007785 3.1e-162 575.5 401 72.1
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 7.0e-162 574.3 403 72.7
Aqoxy5G01421 Aquilegia oxysepala HOM05D005562 ORTHO05D007785 2.0e-161 572.8 399 72.2
HPP92_018726 Vanilla planifolia HOM05D005562 ORTHO05D007785 2.0e-161 572.8 360 77.8
Prupe.8G115600 Prunus persica HOM05D005562 ORTHO05D007785 2.7e-161 572.4 394 71.6
ATR0225G001 Amborella trichopoda HOM05D005562 ORTHO05D007785 5.9e-161 571.2 356 76.7
Oeu057671.1 Olea europaea HOM05D005562 ORTHO05D007785 1.7e-160 569.7 403 72.2
Gohir.D13G035800 Gossypium hirsutum HOM05D005562 ORTHO05D007785 2.9e-160 568.9 401 71.1
CiPaw.05G055600 Carya illinoinensis HOM05D005562 ORTHO05D007785 1.1e-159 567.0 394 72.1
MD10G1088500 Malus domestica HOM05D005562 ORTHO05D007785 1.5e-159 566.6 397 72.0
Migut.B00304 Erythranthe guttata HOM05D005562 ORTHO05D007785 1.9e-159 566.2 382 73.6
Gohir.A13G037500 Gossypium hirsutum HOM05D005562 ORTHO05D007785 1.9e-159 566.2 401 70.6
THA.LOC104814570 Tarenaya hassleriana HOM05D005562 ORTHO05D007785 1.9e-159 566.2 403 70.0
MELO3C021919.2 Cucumis melo HOM05D005562 ORTHO05D007785 5.5e-159 564.7 394 72.3
EL10Ac3g06682 Beta vulgaris HOM05D005562 ORTHO05D007785 7.2e-159 564.3 397 70.5
Sed0010996 Sechium edule HOM05D005562 ORTHO05D007785 2.8e-158 562.4 394 72.3
AUR62042921 Chenopodium quinoa HOM05D005562 ORTHO05D007785 3.6e-158 562.0 351 77.5
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 3.6e-158 562.0 403 70.2
CsaV3_2G014210 Cucumis sativus L. HOM05D005562 ORTHO05D007785 4.7e-158 561.6 396 71.5
TPR.G11154 Trifolium pratense HOM05D005562 ORTHO05D007785 8.0e-158 560.8 395 70.4
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 1.4e-157 560.1 397 70.0
PGSC0003DMG402025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 1.4e-157 560.1 407 70.0
TPR.G14865 Trifolium pratense HOM05D005562 ORTHO05D007785 1.4e-157 560.1 392 70.4
BraA09t37197Z Brassica rapa HOM05D005562 ORTHO05D007785 3.0e-157 558.9 395 71.1
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 3.0e-157 558.9 402 69.7
A09p15570 Brassica napus HOM05D005562 ORTHO05D007785 6.8e-157 557.8 395 71.1
SalBow3G1434 Salvia bowleyana HOM05D005562 ORTHO05D007785 8.9e-157 557.4 368 74.2
Aa31LG8G16860 Aethionema arabicum HOM05D005562 ORTHO05D007785 1.2e-156 557.0 399 71.4
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 1.2e-156 557.0 403 69.7
Medtr1g012540 Medicago truncatula HOM05D005562 ORTHO05D007785 1.2e-156 557.0 355 74.9
Peaxi162Scf00016g01531 Petunia axillaris HOM05D005562 ORTHO05D007785 2.0e-156 556.2 405 69.6
Glyma.07G179700 Glycine max HOM05D005562 ORTHO05D007785 2.6e-156 555.8 395 69.6
Thhalv10023506m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 3.4e-156 555.4 394 70.6
Glyma.20G009400 Glycine max HOM05D005562 ORTHO05D007785 3.4e-156 555.4 395 69.6
Gorai.013G040500 Gossypium raimondii HOM05D005562 ORTHO05D007785 5.7e-156 554.7 427 66.7
CAN.G322.41 Capsicum annuum HOM05D005562 ORTHO05D007785 7.5e-156 554.3 408 70.3
BcaC04g22480 Brassica carinata HOM05D005562 ORTHO05D007785 9.8e-156 553.9 395 70.4
BolC9t54784H Brassica oleracea HOM05D005562 ORTHO05D007785 9.8e-156 553.9 395 70.4
Cc07_g19550 Coffea canephora HOM05D005562 ORTHO05D007785 9.8e-156 553.9 358 76.3
Sopen01g050880 Solanum pennellii HOM05D005562 ORTHO05D007785 9.8e-156 553.9 407 69.0
TWI79G1184 Tripterygium wilfordii HOM05D005562 ORTHO05D007785 9.8e-156 553.9 406 68.2
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 1.3e-155 553.5 406 70.0
SGA_v2.0_scaffold32G13119 Striga asiatica HOM05D005562 ORTHO05D007785 1.7e-155 553.1 397 68.8
Ca_12473_v3 Cicer arietinum L. HOM05D005562 ORTHO05D007785 2.2e-155 552.7 358 74.0
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 2.2e-155 552.7 337 79.8
Potri.004G145700 Populus trichocarpa HOM05D005562 ORTHO05D007785 2.2e-155 552.7 356 75.3
Solyc01g108660.4 Solanum lycopersicum HOM05D005562 ORTHO05D007785 2.2e-155 552.7 407 68.6
PGR142G1983 Punica granatum HOM05D005562 ORTHO05D007785 6.3e-155 551.2 400 67.2
Lj2g0016235 Lotus japonicus HOM05D005562 ORTHO05D007785 8.3e-155 550.8 390 67.7
Os03g0617900 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 8.3e-155 550.8 359 75.5
Phvul.003G012000 Phaseolus vulgaris HOM05D005562 ORTHO05D007785 1.1e-154 550.4 399 67.9
BcaB07g31395 Brassica carinata HOM05D005562 ORTHO05D007785 1.4e-154 550.1 396 69.4
Psat6g096120 Pisum sativum HOM05D005562 ORTHO05D007785 1.4e-154 550.1 391 69.1
C09p18820 Brassica napus HOM05D005562 ORTHO05D007785 1.8e-154 549.7 396 69.9
Sp3g33250 Schrenkiella parvula HOM05D005562 ORTHO05D007785 3.2e-154 548.9 403 69.7
AT2G19940 Arabidopsis thaliana HOM05D005562 ORTHO05D007785 9.2e-154 547.4 360 74.4
CANSAT25G3890 Cannabis sativa HOM05D005562 ORTHO05D007785 9.2e-154 547.4 358 72.9
Lalb_Chr17g0338301 Lupinus albus HOM05D005562 ORTHO05D007785 9.2e-154 547.4 395 68.4
VMungo1215G0206 Vigna mungo HOM05D005562 ORTHO05D007785 9.2e-154 547.4 393 68.2
Carub.0003s3419 Capsella rubella HOM05D005562 ORTHO05D007785 1.2e-153 547.0 401 68.8
ClCG09G017590 Citrullus lanatus HOM05D005562 ORTHO05D007785 4.6e-153 545.0 413 67.6
Nitab4.5_0003726g0070 Nicotiana tabacum HOM05D005562 ORTHO05D007785 1.0e-152 543.9 351 75.8
CARHR110380 Cardamine hirsuta HOM05D005562 ORTHO05D007785 2.3e-152 542.7 401 67.6
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 3.9e-152 542.0 418 67.2
Lsat_1_v5_gn_9_108961 Lactuca sativa HOM05D005562 ORTHO05D007785 3.9e-152 542.0 395 68.9
unitig_26.g10242 Utricularia gibba HOM05D005562 ORTHO05D007785 1.1e-151 540.4 355 73.8
SalBow4G0329 Salvia bowleyana HOM05D005562 ORTHO05D007785 1.9e-151 539.7 439 65.1
Os10g0494200 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 5.6e-151 538.1 356 74.4
arahy.Tifrunner.gnm1.ann1.4TQ1KW Arachis hypogaea HOM05D005562 ORTHO05D007785 1.8e-149 533.1 419 64.7
arahy.Tifrunner.gnm1.ann1.ZFI36T Arachis hypogaea HOM05D005562 ORTHO05D007785 1.8e-149 533.1 378 69.8
CDE01G0106 Ceratophyllum demersum HOM05D005562 ORTHO05D007785 2.3e-149 532.7 327 79.5
Zm00001eb051410 Zea mays HOM05D005562 ORTHO05D007785 5.2e-149 531.6 359 72.7
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 9.8e-148 527.3 397 68.0
ECA240G1421 Erigeron canadensis HOM05D005562 ORTHO05D007785 4.9e-147 525.0 389 66.6
Pp3c24_19140 Physcomitrium patens HOM05D005562 ORTHO05D007785 4.9e-147 525.0 355 72.7
HanXRQChr13g0402421 Helianthus annuus HOM05D005562 ORTHO05D007785 1.4e-146 523.5 383 68.4
HanXRQChr16g0528561 Helianthus annuus HOM05D005562 ORTHO05D007785 3.2e-146 522.3 387 67.4
Pp3c8_22120 Physcomitrium patens HOM05D005562 ORTHO05D007785 5.4e-146 521.5 354 72.0
PGSC0003DMG401025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 5.4e-146 521.5 407 66.3
Sc06g0001440 Simmondsia chinensis HOM05D005562 ORTHO05D007785 1.2e-145 520.4 314 79.6
Mapoly0036s0058 Marchantia polymorpha HOM05D005562 ORTHO05D007785 2.0e-145 519.6 344 72.1
AagrBONN_evm.TU.Sc2ySwM_117.3897 Anthoceros agrestis HOM05D005562 ORTHO05D007785 1.1e-143 513.8 344 70.9
SMO116G0475 Selaginella moellendorffii HOM05D005562 ORTHO05D007785 1.5e-143 513.5 348 70.4
BcaC04g19978 Brassica carinata HOM05D005562 ORTHO05D007785 1.2e-142 510.4 358 70.7
CBR_g5649 Chara braunii HOM05D005562 ORTHO05D001468 2.1e-142 509.6 346 70.2
Nitab4.5_0001401g0050 Nicotiana tabacum HOM05D005562 ORTHO05D007785 4.0e-141 505.4 365 69.6
Thhalv10002012m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 1.7e-139 500.0 353 69.7
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 1.4e-138 496.9 377 67.9
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 7.1e-138 494.6 377 67.6
AL3G48260 Arabidopsis lyrata HOM05D005562 ORTHO05D007785 6.0e-137 491.5 314 75.8
BolC9t57765H Brassica oleracea HOM05D005562 ORTHO05D007785 5.1e-136 488.4 380 65.5
vmacro19466 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 6.6e-136 488.0 403 64.0
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 1.2e-134 483.8 464 58.4
vmacro23230 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 4.4e-132 475.3 292 79.1
AUR62035865 Chenopodium quinoa HOM05D005562 ORTHO05D007785 4.6e-129 465.3 572 47.0
Cre03.g146187 Chlamydomonas reinhardtii HOM05D005562 ORTHO05D007785 1.9e-127 459.9 379 60.2
PRCOL_00005741 Prasinoderma coloniale HOM05D005562 ORTHO05D007785 5.8e-124 448.4 349 62.8
FAN15G1080 Fragaria x ananassa HOM05D005562 ORTHO05D001378 3.0e-112 409.5 386 58.5
C09p49210 Brassica napus HOM05D005562 ORTHO05D007785 1.9e-111 406.8 278 73.4
PSO384G1669 Papaver somniferum HOM05D005562 ORTHO05D007785 3.0e-88 329.7 373 52.8
Cpa.g.sc62.58 Carica papaya HOM05D005562 ORTHO05D007785 1.1e-69 268.1 147 83.7
Actinidia17846 Actinidia chinensis HOM05D005562 ORTHO05D007785 5.3e-69 265.8 194 70.6
HanXRQChr10g0318401 Helianthus annuus HOM05D005562 ORTHO05D007785 2.3e-64 250.4 202 59.4
DCAR_021731 Daucus carota HOM05D005562 ORTHO05D007785 1.7e-54 217.6 315 45.4
Cpa.g.sc26.106 Carica papaya HOM05D005562 ORTHO05D007785 1.6e-52 211.1 144 74.3
Cpa.g.sc62.56 Carica papaya HOM05D005562 ORTHO05D007785 3.6e-49 199.9 186 58.6
Oeu021926.1 Olea europaea HOM05D005562 ORTHO05D007785 6.4e-38 162.5 111 72.1
Actinidia17880 Actinidia chinensis HOM05D005562 ORTHO05D007785 2.5e-34 150.6 111 67.6
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 4.0e-32 143.3 81 77.8
Cfa027024 Carpinus fangiana HOM05D005562 ORTHO05D121372 8.9e-32 142.1 349 28.9
Actinidia17845 Actinidia chinensis HOM05D005562 ORTHO05D030745 3.9e-27 126.7 80 75.0
SEGI_28239 Sequoiadendron giganteum HOM05D005562 ORTHO05D007785 5.6e-26 122.9 66 80.3
CSS0029422 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D111180 4.1e-13 80.1 94 47.9
A10p14750 Brassica napus HOM05D005562 ORTHO05D007785 3.0e-11 73.9 51 64.7
Glyma.08G079000 Glycine max HOM05D005562 ORTHO05D007785 1.2e-09 68.6 45 66.7
Glyma.08G079050 Glycine max HOM05D005562 ORTHO05D213306 3.1e-08 63.9 43 67.4


User provided reference genes

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