Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 2656.3 1376 100.0
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 2450.6 1368 93.7
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 0.0e+00 1553.1 1399 60.5
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 0.0e+00 1548.5 1393 60.4
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 0.0e+00 1547.7 1384 60.0
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1479.9 1382 57.3
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 0.0e+00 1474.9 1421 56.4
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1464.5 1377 57.2
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1463.4 1377 57.1
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 0.0e+00 1460.3 1377 57.1
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 0.0e+00 1459.1 1371 57.8
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1457.2 1381 56.9
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 0.0e+00 1454.5 1392 56.7
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1450.3 1367 57.3
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 0.0e+00 1449.5 1381 56.6
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1441.4 1367 57.3
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 0.0e+00 1439.5 1385 56.3
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 0.0e+00 1436.8 1388 56.1
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 0.0e+00 1431.8 1333 58.0
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 0.0e+00 1414.8 1387 54.9
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1408.7 1341 57.0
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 0.0e+00 1403.7 1410 55.1
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 0.0e+00 1397.5 1399 55.5
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 0.0e+00 1393.3 1389 55.8
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 0.0e+00 1392.5 1404 55.4
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 0.0e+00 1374.8 1378 54.4
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 0.0e+00 1372.5 1381 54.4
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 0.0e+00 1372.5 1397 56.0
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 0.0e+00 1349.7 1386 52.6
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 0.0e+00 1347.0 1383 53.4
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 0.0e+00 1339.7 1464 52.0
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 0.0e+00 1339.7 1384 53.4
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 0.0e+00 1339.3 1375 53.3
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 0.0e+00 1336.2 1396 53.2
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 0.0e+00 1333.9 1388 52.4
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 0.0e+00 1332.4 1379 53.3
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1330.5 1375 53.3
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 0.0e+00 1330.1 1375 53.2
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 0.0e+00 1329.7 1409 51.7
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1328.5 1425 51.5
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1324.7 1369 53.1
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 0.0e+00 1324.3 1396 51.4
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1322.4 1407 51.9
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 0.0e+00 1320.8 1376 53.6
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 0.0e+00 1320.4 1225 57.3
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 0.0e+00 1312.0 1376 51.2
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 0.0e+00 1312.0 1378 53.0
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 0.0e+00 1307.7 1328 54.7
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1307.4 1379 52.1
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1305.8 1362 52.9
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 0.0e+00 1305.4 1386 52.0
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1305.0 1471 50.2
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 0.0e+00 1301.6 1364 53.1
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 0.0e+00 1295.8 1431 50.8
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 0.0e+00 1294.6 1374 52.1
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1290.0 1382 52.5
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 0.0e+00 1288.9 1372 52.1
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 0.0e+00 1286.6 1374 52.0
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 0.0e+00 1283.9 1380 53.3
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 0.0e+00 1283.5 1389 50.8
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 0.0e+00 1282.7 1362 51.9
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 0.0e+00 1281.9 1353 51.9
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 0.0e+00 1279.6 1400 50.9
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1279.2 1380 52.0
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1274.6 1371 52.1
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 0.0e+00 1274.2 1381 51.3
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1273.5 1372 52.3
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 0.0e+00 1272.3 1372 51.9
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 0.0e+00 1268.4 1374 52.3
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 0.0e+00 1256.5 1381 51.0
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1255.0 1372 51.6
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1223.0 1555 47.3
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 0.0e+00 1211.1 1132 59.5
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 0.0e+00 1193.3 1373 49.2
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1182.9 1372 49.3
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 0.0e+00 1170.2 1376 47.9
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1152.9 1611 44.6
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 0.0e+00 1151.3 1366 48.4
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 2.4e-310 1069.3 1167 51.7
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 1.9e-307 1059.7 1136 51.9
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 3.3e-291 1005.7 1052 52.7
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 1.8e-284 983.4 998 54.4
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 8.8e-276 954.5 1011 53.3
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 5.7e-275 951.8 1054 50.4
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 3.6e-269 932.6 843 60.5
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 5.9e-248 862.1 843 54.4
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 5.0e-247 859.0 1362 39.2
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 6.0e-232 808.9 755 56.3
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 6.2e-221 772.3 825 50.9
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 1.3e-218 764.6 1369 39.2
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 1.7e-218 764.2 739 55.1
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 2.1e-184 651.0 1442 32.5
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 1.5e-171 608.2 1452 32.2
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 1.2e-155 555.4 596 53.4
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 1.0e-154 552.4 451 65.4
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 2.2e-149 534.6 519 55.5
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 7.5e-142 509.6 666 43.8
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 3.5e-139 500.7 1019 34.6
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 2.3e-138 498.0 450 58.9
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 1.0e-135 489.2 537 52.5
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 4.1e-132 477.2 532 51.1
Cpa.g.sc34.11 Carica papaya HOM05D004277 ORTHO05D005148 1.5e-118 432.2 408 56.9
Haze_07823 Corylus avellana HOM05D004277 ORTHO05D005148 1.5e-118 432.2 330 65.2
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.5e-102 379.0 471 42.9
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 6.4e-93 347.1 469 45.0
Nitab4.5_0009962g0020 Nicotiana tabacum HOM05D004277 ORTHO05D005148 1.3e-82 312.8 267 60.3
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 4.3e-81 307.8 850 31.2
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 5.3e-79 300.8 577 36.6
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 5.3e-79 300.8 354 50.3
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 8.7e-74 283.5 443 40.4
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 7.9e-67 260.4 390 40.5
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 4.1e-63 248.1 354 45.5
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.1e-57 229.9 159 67.9
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 3.1e-55 221.9 263 50.2
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 3.1e-55 221.9 245 46.1
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 3.4e-54 218.4 138 73.9
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 9.4e-52 210.3 402 39.3
MD10G1205800 Malus domestica HOM05D004277 ORTHO05D005148 2.1e-51 209.1 247 50.6
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 3.0e-50 205.3 209 60.3
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 7.4e-49 200.7 261 43.3
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 6.3e-48 197.6 219 50.2
MD05G1224300 Malus domestica HOM05D004277 ORTHO05D005148 3.4e-46 191.8 137 69.3
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 5.9e-46 191.0 1359 23.1
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 2.9e-45 188.7 175 57.1
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 1.0e-42 180.3 169 55.6
TAR624G0115 Trochodendron aralioides HOM05D004277 ORTHO05D005148 1.8e-42 179.5 176 55.1
TPR.G40005 Trifolium pratense HOM05D004277 ORTHO05D005148 1.0e-37 163.7 138 62.3
CBR_g39747 Chara braunii HOM05D004277 ORTHO05D005148 8.5e-37 160.6 679 24.3
BcaB02g08672 Brassica carinata HOM05D004277 ORTHO05D005148 2.1e-35 156.0 161 54.7
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 4.0e-34 151.8 1243 22.5
SHI21617 Sapria himalayana HOM05D004277 ORTHO05D005148 1.0e-29 137.1 133 54.1
Zm00001eb060300 Zea mays HOM05D004277 ORTHO05D005148 5.0e-29 134.8 137 53.3
CDE05G3501 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 2.3e-26 125.9 108 63.0
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 2.3e-26 125.9 471 27.8
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 4.5e-22 111.7 166 42.8
MELO3C029569.2 Cucumis melo HOM05D004277 ORTHO05D005148 3.8e-21 108.6 77 63.6
MELO3C027882.2 Cucumis melo HOM05D004277 ORTHO05D005148 4.7e-19 101.7 158 42.4
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 4.7e-19 101.7 95 52.6
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 3.0e-18 99.0 152 42.1
SEGI_27653 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 3.0e-18 99.0 117 42.7
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 1.2e-17 97.1 99 53.5
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 1.2e-17 97.1 100 49.0
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 2.0e-17 96.3 498 26.1
Actinidia07382 Actinidia chinensis HOM05D004277 ORTHO05D005148 3.4e-17 95.5 277 32.1
Cpa.g.sc34.6 Carica papaya HOM05D004277 ORTHO05D005148 5.7e-17 94.7 91 52.7
Zm00001eb269250 Zea mays HOM05D004277 ORTHO05D005148 9.8e-17 94.0 95 49.5
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 4.9e-16 91.7 64 71.9
MD10G1205700 Malus domestica HOM05D004277 ORTHO05D005148 1.1e-15 90.5 107 51.4
MD10G1205600 Malus domestica HOM05D004277 ORTHO05D005148 5.9e-14 84.7 61 63.9
Zm00001eb307980 Zea mays HOM05D004277 ORTHO05D005148 7.8e-14 84.3 98 41.8
Zm00001eb086610 Zea mays HOM05D004277 ORTHO05D005148 1.0e-13 84.0 104 46.2
TPR.G28108 Trifolium pratense HOM05D004277 ORTHO05D005148 1.3e-13 83.6 89 50.6
Actinidia07375 Actinidia chinensis HOM05D004277 ORTHO05D005148 3.6e-11 75.5 136 39.7
FAN06G0062 Fragaria x ananassa HOM05D016453 ORTHO05D017011 1.8e-10 73.2 148 37.8
TPR.G17466 Trifolium pratense HOM05D004277 ORTHO05D005148 8.9e-10 70.9 57 59.6
TPR.G236 Trifolium pratense HOM05D004277 ORTHO05D005148 1.2e-09 70.5 51 64.7
FAN12G1216 Fragaria x ananassa HOM05D016453 ORTHO05D017011 5.8e-09 68.2 148 36.5
FvH4_7g12450 Fragaria vesca HOM05D016453 ORTHO05D017011 8.3e-08 64.3 111 41.4
FAN06G4064 Fragaria x ananassa HOM05D016453 ORTHO05D017011 1.4e-07 63.5 111 41.4
Hma1.2p1_0148F.1_g065920 Hydrangea macrophylla HOM05D001726 ORTHO05D001761 3.2e-07 62.4 92 39.1
QL04p080502 Quercus lobata HOM05D004277 ORTHO05D005148 4.1e-07 62.0 60 56.7
Zm00001eb329120 Zea mays HOM05D002219 ORTHO05D012612 4.1e-07 62.0 95 40.0
Actinidia07374 Actinidia chinensis HOM05D004277 ORTHO05D005148 3.5e-06 58.9 130 33.8
SHI21618 Sapria himalayana HOM05D004277 ORTHO05D005148 6.0e-06 58.2 62 54.8


User provided reference genes

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