Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 2.6e-127 458.8 237 100.0
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 7.8e-124 447.2 237 97.5
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 2.9e-94 349.0 232 76.7
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 7.2e-93 344.4 234 75.6
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 1.2e-92 343.6 227 77.1
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 2.1e-92 342.8 227 76.2
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 2.7e-92 342.4 234 75.2
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 3.6e-92 342.0 236 74.6
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 4.6e-92 341.7 236 74.2
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 1.0e-91 340.5 227 75.8
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 1.1e-90 337.0 227 75.3
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 1.5e-90 336.7 227 74.4
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 2.5e-90 335.9 227 76.7
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 5.7e-90 334.7 236 70.3
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 5.7e-90 334.7 227 73.6
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 7.4e-90 334.3 235 72.3
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 9.7e-90 334.0 230 73.0
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 1.3e-89 333.6 227 74.0
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 2.2e-89 332.8 232 71.6
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 2.2e-89 332.8 227 73.1
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 2.8e-89 332.4 223 77.1
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 6.3e-89 331.3 227 75.8
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 8.2e-89 330.9 227 72.7
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 1.1e-88 330.5 237 71.7
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 1.1e-88 330.5 227 71.8
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 1.1e-88 330.5 223 74.9
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 1.1e-88 330.5 227 72.2
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 4.1e-88 328.6 232 71.6
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 4.1e-88 328.6 228 72.4
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 4.1e-88 328.6 226 73.9
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 5.3e-88 328.2 235 71.1
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 5.3e-88 328.2 227 71.4
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 5.3e-88 328.2 226 73.5
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 5.3e-88 328.2 223 75.3
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 5.3e-88 328.2 232 72.8
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 1.2e-87 327.0 229 69.9
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 1.2e-87 327.0 227 71.8
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 1.5e-87 326.6 227 73.6
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.5e-87 326.6 219 76.7
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 2.0e-87 326.2 226 73.0
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 2.0e-87 326.2 228 72.8
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 2.6e-87 325.9 232 72.0
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 2.6e-87 325.9 230 70.9
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 2.6e-87 325.9 227 74.0
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 4.5e-87 325.1 223 74.4
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 7.7e-87 324.3 236 71.2
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 7.7e-87 324.3 232 72.4
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.7e-86 323.2 234 70.9
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 2.2e-86 322.8 227 70.9
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 2.2e-86 322.8 227 71.4
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 2.2e-86 322.8 230 70.9
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 2.2e-86 322.8 235 70.6
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 3.8e-86 322.0 234 70.1
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 3.8e-86 322.0 228 73.7
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 5.0e-86 321.6 232 70.7
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 6.5e-86 321.2 226 74.8
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 6.5e-86 321.2 225 72.0
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 6.5e-86 321.2 230 71.3
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 6.5e-86 321.2 227 73.6
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 1.1e-85 320.5 228 71.5
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 1.4e-85 320.1 227 72.2
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 1.4e-85 320.1 232 71.1
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 1.4e-85 320.1 232 70.7
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 1.9e-85 319.7 227 73.1
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 1.9e-85 319.7 226 71.2
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 1.9e-85 319.7 227 72.2
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 1.9e-85 319.7 227 71.8
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 2.5e-85 319.3 224 74.1
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 4.2e-85 318.5 223 71.7
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 5.5e-85 318.2 230 68.7
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 5.5e-85 318.2 236 70.8
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 7.2e-85 317.8 236 69.5
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 9.4e-85 317.4 234 70.1
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 9.4e-85 317.4 227 70.0
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 1.2e-84 317.0 210 77.6
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 1.2e-84 317.0 223 71.7
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 1.6e-84 316.6 227 70.9
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 1.6e-84 316.6 233 70.4
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 2.7e-84 315.8 234 70.1
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 3.6e-84 315.5 226 70.4
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 6.1e-84 314.7 233 70.0
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 1.0e-83 313.9 227 70.0
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 1.0e-83 313.9 230 68.7
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.0e-83 313.9 227 70.5
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.0e-83 313.9 234 68.8
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 1.0e-83 313.9 234 69.7
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 1.4e-83 313.5 227 70.5
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 1.8e-83 313.2 232 69.8
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 1.8e-83 313.2 227 68.7
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 2.3e-83 312.8 227 70.0
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 5.1e-83 311.6 227 69.2
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 5.1e-83 311.6 267 62.9
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 6.7e-83 311.2 227 71.4
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 2.0e-82 309.7 230 67.4
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 2.6e-82 309.3 230 67.4
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 2.6e-82 309.3 230 67.0
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 4.4e-82 308.5 230 67.0
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 5.7e-82 308.1 230 66.5
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 7.4e-82 307.8 227 69.6
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.3e-81 307.0 230 67.4
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.3e-81 307.0 229 68.1
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.3e-81 307.0 229 67.7
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 1.7e-81 306.6 230 67.0
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 2.2e-81 306.2 223 69.5
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 2.8e-81 305.8 223 68.2
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 2.8e-81 305.8 227 69.2
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 6.3e-81 304.7 227 67.0
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 1.1e-80 303.9 229 67.2
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 1.1e-80 303.9 223 68.6
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 2.4e-80 302.8 223 67.7
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 3.1e-80 302.4 225 68.4
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 7.0e-80 301.2 225 68.0
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 5.9e-79 298.1 203 74.4
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 5.0e-78 295.0 230 65.2
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 1.5e-77 293.5 193 77.7
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 1.9e-77 293.1 314 52.2
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 1.4e-75 287.0 205 70.7
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.4e-75 287.0 232 65.9
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 2.3e-75 286.2 221 67.0
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 7.4e-74 281.2 208 71.6
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 1.1e-72 277.3 232 61.6
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 1.1e-72 277.3 208 67.3
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 3.1e-72 275.8 192 73.4
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 7.7e-71 271.2 220 64.5
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 1.7e-70 270.0 237 61.2
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.4e-67 260.4 200 67.5
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 6.8e-67 258.1 191 67.5
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 2.9e-62 242.7 237 58.2
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 8.5e-62 241.1 178 71.9
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 1.8e-59 233.4 221 54.8
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 1.5e-58 230.3 148 77.0
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 2.6e-58 229.6 221 55.2
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 5.7e-58 228.4 222 53.2
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 8.3e-57 224.6 183 65.0
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 4.1e-56 222.2 134 82.8
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 1.6e-55 220.3 228 52.6
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 4.5e-55 218.8 216 56.9
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 7.2e-53 211.5 145 73.1
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.7e-49 200.3 125 80.0
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 2.0e-47 193.4 145 66.9
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 8.6e-46 188.0 141 70.9
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 1.1e-45 187.6 139 66.2
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 2.8e-44 183.0 135 68.9
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 5.8e-42 175.3 143 59.4
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 2.2e-41 173.3 141 61.7
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 6.4e-41 171.8 135 66.7
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 4.1e-40 169.1 147 61.2
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 3.3e-37 159.5 119 66.4
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 6.8e-35 151.8 203 41.9
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 3.4e-34 149.4 198 46.0
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 9.8e-34 147.9 86 87.2
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 2.9e-33 146.4 186 44.6
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 3.7e-33 146.0 127 61.4
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 1.4e-32 144.1 99 73.7
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 5.1e-30 135.6 123 62.6
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 1.2e-28 131.0 101 68.3
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 2.8e-28 129.8 88 75.0
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 4.7e-28 129.0 86 74.4
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 1.8e-27 127.1 115 55.7
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 2.0e-26 123.6 83 75.9
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 2.6e-26 123.2 86 69.8
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 1.1e-24 117.9 81 72.8
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 1.1e-24 117.9 96 65.6
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 1.4e-24 117.5 122 54.1
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 5.4e-24 115.5 78 74.4
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.1e-23 113.6 86 68.6
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 1.0e-22 111.3 77 75.3
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 1.9e-21 107.1 86 64.0
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 2.5e-21 106.7 128 50.0
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 3.3e-21 106.3 104 52.9
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 3.1e-19 99.8 75 68.0
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 7.6e-18 95.1 95 55.8
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 1.9e-16 90.5 219 30.1
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 1.7e-14 84.0 88 52.3
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 5.1e-14 82.4 220 29.5
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 1.1e-13 81.3 59 67.8
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 1.1e-13 81.3 51 78.4
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 1.6e-12 77.4 86 52.3
Cre13.g586250 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 4.8e-12 75.9 188 28.7
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 2.4e-11 73.6 66 56.1
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 9.9e-10 68.2 58 63.8
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 4.9e-09 65.9 68 48.5
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 6.4e-09 65.5 50 68.0


User provided reference genes

Program Settings