Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G0611 Papaver somniferum HOM05D004498 ORTHO05D005300 2.9e-296 1021.1 530 100.0
PSO210G1345 Papaver somniferum HOM05D004498 ORTHO05D005300 1.2e-289 999.2 530 97.4
TAR375G0984 Trochodendron aralioides HOM05D004498 ORTHO05D005300 2.6e-228 795.4 541 76.2
Aqoxy3G03912 Aquilegia oxysepala HOM05D004498 ORTHO05D005300 1.9e-223 779.2 530 74.7
QL09p005249 Quercus lobata HOM05D004498 ORTHO05D005300 2.8e-222 775.4 518 75.3
Potri.001G126200 Populus trichocarpa HOM05D004498 ORTHO05D005300 1.5e-220 769.6 513 75.6
Ciclev10004737m.g Citrus clementina HOM05D004498 ORTHO05D005300 3.4e-220 768.5 530 74.0
Gorai.008G215300 Gossypium raimondii HOM05D004498 ORTHO05D005300 4.5e-220 768.1 526 74.3
Manes.14G037200 Manihot esculenta HOM05D004498 ORTHO05D005300 7.7e-220 767.3 513 76.0
Hma1.2p1_0432F.1_g151900 Hydrangea macrophylla HOM05D004498 ORTHO05D005300 1.3e-219 766.5 520 74.6
Gohir.D12G200100 Gossypium hirsutum HOM05D004498 ORTHO05D005300 2.9e-219 765.4 528 74.1
Atru.chr1.817 Acer truncatum HOM05D004498 ORTHO05D005300 2.5e-218 762.3 527 73.2
Cfa008145 Carpinus fangiana HOM05D004498 ORTHO05D005300 2.5e-218 762.3 516 75.4
COL.COLO4_14097 Corchorus olitorius HOM05D004498 ORTHO05D005300 3.2e-218 761.9 524 73.9
Rhsim03G0165600 Rhododendron simsii HOM05D004498 ORTHO05D005300 7.9e-217 757.3 543 72.4
CiPaw.03G020300 Carya illinoinensis HOM05D004498 ORTHO05D005300 3.0e-216 755.4 525 73.1
Thecc.03G153100 Theobroma cacao HOM05D004498 ORTHO05D005300 5.3e-213 744.6 520 72.5
Sed0003630 Sechium edule HOM05D004498 ORTHO05D005300 2.0e-212 742.7 527 71.9
THA.LOC104819414 Tarenaya hassleriana HOM05D004498 ORTHO05D005300 5.9e-212 741.1 518 72.0
Ca_02786_v3 Cicer arietinum L. HOM05D004498 ORTHO05D005300 3.8e-211 738.4 519 71.3
Cc02_g04430 Coffea canephora HOM05D004498 ORTHO05D005300 8.5e-211 737.3 530 71.5
CsaV3_4G004040 Cucumis sativus L. HOM05D004498 ORTHO05D005300 1.2e-209 733.4 523 71.3
Actinidia24991 Actinidia chinensis HOM05D004498 ORTHO05D005300 1.6e-209 733.0 502 74.1
Sabra01G0097300 Salix brachista HOM05D004498 ORTHO05D005300 2.7e-209 732.3 587 65.8
Lj3g0015680 Lotus japonicus HOM05D004498 ORTHO05D005300 7.9e-209 730.7 520 70.0
Lalb_Chr04g0258171 Lupinus albus HOM05D004498 ORTHO05D005300 1.0e-208 730.3 518 71.0
TPR.G3665 Trifolium pratense HOM05D004498 ORTHO05D005300 1.4e-208 729.9 520 70.2
ECA233G4878 Erigeron canadensis HOM05D004498 ORTHO05D005300 1.8e-208 729.6 513 71.7
Solyc05g051630.4 Solanum lycopersicum HOM05D004498 ORTHO05D005300 1.8e-208 729.6 524 71.8
Medtr4g036550 Medicago truncatula HOM05D004498 ORTHO05D005300 3.0e-208 728.8 516 70.7
Thhalv10013248m.g Eutrema salsugineum HOM05D004498 ORTHO05D005300 6.7e-208 727.6 520 70.6
Psat6g116600 Pisum sativum HOM05D004498 ORTHO05D005300 8.8e-208 727.2 520 69.4
Phvul.011G007100 Phaseolus vulgaris HOM05D004498 ORTHO05D005300 4.4e-207 724.9 520 69.8
Psat6g142360 Pisum sativum HOM05D004498 ORTHO05D005300 4.4e-207 724.9 518 69.9
Sp6g35240 Schrenkiella parvula HOM05D004498 ORTHO05D005300 1.7e-206 723.0 513 70.6
Sc15g0000230 Simmondsia chinensis HOM05D004498 ORTHO05D005300 1.7e-206 723.0 530 68.9
Glyma.09G230400 Glycine max HOM05D004498 ORTHO05D005300 3.7e-206 721.8 520 70.8
BcaC06g32495 Brassica carinata HOM05D004498 ORTHO05D005300 8.2e-206 720.7 518 70.5
Migut.D02110 Erythranthe guttata HOM05D004498 ORTHO05D005300 2.4e-205 719.2 531 69.9
Eucgr.G03077 Eucalyptus grandis HOM05D004498 ORTHO05D005300 7.0e-205 717.6 518 69.5
A10p29360 Brassica napus HOM05D004498 ORTHO05D005300 1.2e-204 716.8 519 69.9
BcaC03g13193 Brassica carinata HOM05D004498 ORTHO05D005300 4.5e-204 714.9 515 69.3
BraA10t44979Z Brassica rapa HOM05D004498 ORTHO05D005300 7.7e-204 714.1 519 69.7
BcaB05g21603 Brassica carinata HOM05D004498 ORTHO05D005300 2.9e-203 712.2 515 69.5
CAN.G937.4 Capsicum annuum HOM05D004498 ORTHO05D005300 2.5e-202 709.1 518 70.1
MD11G1042200 Malus domestica HOM05D004498 ORTHO05D005300 2.5e-202 709.1 529 69.6
Migut.G01103 Erythranthe guttata HOM05D004498 ORTHO05D005300 5.5e-202 708.0 526 69.6
Prupe.6G033300 Prunus persica HOM05D004498 ORTHO05D005300 3.6e-201 705.3 514 70.0
Carub.0006s0661 Capsella rubella HOM05D004498 ORTHO05D005300 6.7e-200 701.0 515 67.6
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 3.3e-199 698.7 508 68.9
AL6G17950 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 8.2e-198 694.1 513 67.4
ClCG07G016840 Citrullus lanatus HOM05D004498 ORTHO05D005300 7.0e-197 691.0 494 71.3
Gohir.A12G197600 Gossypium hirsutum HOM05D004498 ORTHO05D005300 1.2e-196 690.3 483 73.3
HanXRQChr05g0142551 Helianthus annuus HOM05D004498 ORTHO05D005300 3.5e-196 688.7 492 71.3
AT5G07630 Arabidopsis thaliana HOM05D004498 ORTHO05D005300 1.9e-194 682.9 513 66.1
BraA02t04927Z Brassica rapa HOM05D004498 ORTHO05D005300 1.3e-190 670.2 619 57.7
Glyma.12G006200 Glycine max HOM05D004498 ORTHO05D005300 1.7e-190 669.8 478 71.3
Manes.06G133200 Manihot esculenta HOM05D004498 ORTHO05D005300 6.3e-190 667.9 523 68.5
BolC2t06286H Brassica oleracea HOM05D004498 ORTHO05D005300 1.1e-189 667.2 630 57.0
Dinv16848 Davidia involucrata HOM05D004498 ORTHO05D005300 2.4e-189 666.0 519 68.6
TWI23G0902 Tripterygium wilfordii HOM05D004498 ORTHO05D005300 2.4e-189 666.0 473 71.2
Aa31LG3G18790 Aethionema arabicum HOM05D004498 ORTHO05D005300 1.2e-185 653.7 513 65.1
CSS0042388 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.0e-184 650.6 444 74.8
GSVIVG01014038001 Vitis vinifera HOM05D004498 ORTHO05D005300 2.3e-184 649.4 521 65.5
Duzib084G1021 Durio zibethinus HOM05D004498 ORTHO05D005300 7.5e-183 644.4 520 65.0
Nn1g09651 Nelumbo nucifera HOM05D004498 ORTHO05D005300 2.2e-182 642.9 446 74.7
Carub.0003s0947 Capsella rubella HOM05D004498 ORTHO05D005300 1.4e-181 640.2 514 65.0
RcHm_v2.0_Chr5g0074831 Rosa chinensis HOM05D004498 ORTHO05D005300 1.8e-181 639.8 546 62.5
FvH4_3g41750 Fragaria vesca HOM05D004498 ORTHO05D005300 2.4e-181 639.4 537 62.8
FAN11G1420 Fragaria x ananassa HOM05D004498 ORTHO05D005300 5.6e-178 628.2 552 60.9
Nitab4.5_0001187g0110 Nicotiana tabacum HOM05D004498 ORTHO05D005300 8.0e-177 624.4 504 66.3
Lj8A44G33 Lonicera japonica HOM05D004498 ORTHO05D005300 2.3e-176 622.9 452 72.8
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 4.0e-176 622.1 551 59.7
AL3G21620 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 9.8e-175 617.5 477 66.7
Lsat_1_v5_gn_8_10281 Lactuca sativa HOM05D004498 ORTHO05D005300 4.9e-174 615.1 444 70.9
vmacro22807 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 5.4e-173 611.7 495 66.3
DCAR_009449 Daucus carota HOM05D004498 ORTHO05D005300 1.6e-172 610.1 520 61.3
SalBow7G0508 Salvia bowleyana HOM05D004498 ORTHO05D005300 1.0e-171 607.4 437 72.1
PGR119G0143 Punica granatum HOM05D004498 ORTHO05D005300 3.9e-171 605.5 471 67.7
MELO3C017661.2 Cucumis melo HOM05D004498 ORTHO05D005300 2.0e-167 593.2 411 73.2
FAN16G2392 Fragaria x ananassa HOM05D004498 ORTHO05D005300 3.4e-167 592.4 537 59.8
Hund20838 Selenicereus undatus HOM05D004498 ORTHO05D005300 1.9e-165 586.6 505 60.2
Sopen05g030080 Solanum pennellii HOM05D004498 ORTHO05D005300 4.1e-165 585.5 427 71.7
HPP92_003455 Vanilla planifolia HOM05D004498 ORTHO05D005300 3.5e-164 582.4 528 58.7
ATR0745G086 Amborella trichopoda HOM05D004498 ORTHO05D005300 3.3e-162 575.9 521 60.3
AUR62009833 Chenopodium quinoa HOM05D004498 ORTHO05D005300 2.8e-161 572.8 498 60.8
FAN25G1514 Fragaria x ananassa HOM05D004498 ORTHO05D005300 8.9e-160 567.8 575 55.0
arahy.Tifrunner.gnm1.ann1.LBI7WJ Arachis hypogaea HOM05D004498 ORTHO05D005300 5.8e-159 565.1 420 69.5
EL10Ac7g16351 Beta vulgaris HOM05D004498 ORTHO05D005300 2.1e-156 556.6 590 54.1
arahy.Tifrunner.gnm1.ann1.V9VPQR Arachis hypogaea HOM05D004498 ORTHO05D005300 9.5e-154 547.7 447 64.9
SGA_v2.0_scaffold115G32141 Striga asiatica HOM05D004498 ORTHO05D005300 7.1e-149 531.6 572 52.8
Migut.G01144 Erythranthe guttata HOM05D004498 ORTHO05D005300 4.6e-148 528.9 386 71.5
Zm00001eb105090 Zea mays HOM05D004498 ORTHO05D005300 1.9e-146 523.5 466 59.4
SHI13988 Sapria himalayana HOM05D004498 ORTHO05D005300 1.6e-145 520.4 490 56.7
Peaxi162Scf00167g00733 Petunia axillaris HOM05D004498 ORTHO05D005300 3.6e-145 519.2 424 65.8
unitig_578.g16611 Utricularia gibba HOM05D004498 ORTHO05D005300 9.9e-143 511.1 448 58.5
FAN21G3639 Fragaria x ananassa HOM05D004498 ORTHO05D005300 4.9e-142 508.8 460 59.1
BolC9t59715H Brassica oleracea HOM05D004498 ORTHO05D005300 2.4e-141 506.5 478 58.6
C09p69720 Brassica napus HOM05D004498 ORTHO05D005300 4.3e-138 495.7 475 57.1
Dinv06575 Davidia involucrata HOM05D004498 ORTHO05D005300 1.8e-136 490.3 398 66.1
Nitab4.5_0002764g0030 Nicotiana tabacum HOM05D004498 ORTHO05D005300 8.7e-131 471.5 427 61.4
SGA_v2.0_scaffold92G28289 Striga asiatica HOM05D004498 ORTHO05D005300 1.7e-126 457.2 376 63.6
Oeu022469.1 Olea europaea HOM05D004498 ORTHO05D005300 1.4e-117 427.6 303 71.6
GSVIVG01037114001 Vitis vinifera HOM05D004498 ORTHO05D005300 1.2e-116 424.5 393 59.8
Mapoly0124s0016 Marchantia polymorpha HOM05D004498 ORTHO05D005300 3.5e-116 422.9 515 47.0
Rhsim07G0010200 Rhododendron simsii HOM05D004498 ORTHO05D005300 3.5e-116 422.9 334 67.7
Pp3c18_8280 Physcomitrium patens HOM05D004498 ORTHO05D005300 7.6e-111 405.2 478 46.7
Migut.A00970 Erythranthe guttata HOM05D004498 ORTHO05D005300 2.2e-110 403.7 301 69.8
SMO200G0031 Selaginella moellendorffii HOM05D004498 ORTHO05D005300 7.9e-108 395.2 506 44.3
CARHR205520 Cardamine hirsuta HOM05D004498 ORTHO05D005300 1.7e-94 350.9 251 70.1
AagrBONN_evm.TU.Sc2ySwM_362.1167 Anthoceros agrestis HOM05D004498 ORTHO05D005300 1.8e-91 340.9 445 45.8
Nitab4.5_0000818g0240 Nicotiana tabacum HOM05D004498 ORTHO05D005300 3.0e-91 340.1 289 64.4
arahy.Tifrunner.gnm1.ann1.XAT8RN Arachis hypogaea HOM05D004498 ORTHO05D005300 6.3e-81 305.8 295 57.3
Actinidia13585 Actinidia chinensis HOM05D004498 ORTHO05D005300 8.2e-81 305.4 215 72.1
AUR62038145 Chenopodium quinoa HOM05D004498 ORTHO05D005300 3.5e-79 300.1 384 47.9
Nitab4.5_0003647g0080 Nicotiana tabacum HOM05D004498 ORTHO05D005300 5.9e-71 272.7 463 40.4
CDE02G4122 Ceratophyllum demersum HOM05D004498 ORTHO05D005300 1.1e-69 268.5 211 68.7
Migut.G01109 Erythranthe guttata HOM05D004498 ORTHO05D005300 3.3e-69 266.9 192 70.3
BcaC06g32419 Brassica carinata HOM05D004498 ORTHO05D005300 2.0e-66 257.7 186 69.9
AagrBONN_evm.TU.Sc2ySwM_362.1160 Anthoceros agrestis HOM05D004498 ORTHO05D005300 2.6e-66 257.3 432 41.0
Oeu042546.1 Olea europaea HOM05D004498 ORTHO05D005300 6.6e-62 242.7 220 61.4
Cre11.g467726 Chlamydomonas reinhardtii HOM05D004498 ORTHO05D005300 1.6e-60 238.0 656 30.2
BcaNung06188 Brassica carinata HOM05D004498 ORTHO05D005300 9.8e-58 228.8 162 67.9
SEGI_20056 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.8e-51 208.0 198 55.6
arahy.Tifrunner.gnm1.ann1.BI5KXL Arachis hypogaea HOM05D004498 ORTHO05D005300 3.6e-44 183.7 183 54.6
SGA_v2.0_scaffold4035G54420 Striga asiatica HOM05D004498 ORTHO05D005300 6.0e-39 166.4 150 55.3
MCO14G174 Micromonas commoda HOM05D004498 ORTHO05D005300 1.3e-38 165.2 428 32.2
Sabra03G0074300 Salix brachista HOM05D004498 ORTHO05D005300 3.0e-38 164.1 162 56.8
PGSC0003DMG401007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 2.8e-36 157.5 97 81.4
Os07g0486100 Oryza sativa ssp. japonica HOM05D004498 ORTHO05D005300 1.1e-35 155.6 193 48.7
Nitab4.5_0002764g0040 Nicotiana tabacum HOM05D004498 ORTHO05D005300 4.6e-31 140.2 104 69.2
Nn1g09635 Nelumbo nucifera HOM05D004498 ORTHO05D005300 6.0e-31 139.8 98 67.3
SEGI_08016 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 6.0e-31 139.8 154 49.4
SEGI_20600 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 6.0e-31 139.8 154 49.4
SEGI_28281 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.0e-30 139.0 121 56.2
CSS0024530 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.8e-27 128.3 86 69.8
PGSC0003DMG402007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 4.0e-27 127.1 98 62.2
Lj3g0020155 Lotus japonicus HOM05D004498 ORTHO05D005300 5.2e-27 126.7 94 73.4
PRCOL_00001376 Prasinoderma coloniale HOM05D004498 ORTHO05D005300 3.2e-24 117.5 506 27.7
FvH4_1g27600 Fragaria vesca HOM05D004498 ORTHO05D005300 5.6e-21 106.7 91 64.8
Rhsim07G0010100 Rhododendron simsii HOM05D004498 ORTHO05D005300 8.1e-20 102.8 242 36.4
vmacro22806 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 1.4e-19 102.1 79 59.5
SalBow8G0163 Salvia bowleyana HOM05D004498 ORTHO05D005300 5.8e-18 96.7 62 79.0
SalBow8G4260 Salvia bowleyana HOM05D004498 ORTHO05D005300 5.8e-18 96.7 62 79.0
CARHR084780 Cardamine hirsuta HOM05D004498 ORTHO05D005300 7.6e-18 96.3 67 68.7
Potri.003G107501 Populus trichocarpa HOM05D004498 ORTHO05D005300 2.4e-16 91.3 67 68.7
Prupe.6G034800 Prunus persica HOM05D004498 ORTHO05D005300 1.2e-15 89.0 56 76.8
SalBow7G0435 Salvia bowleyana HOM05D004498 ORTHO05D005300 4.6e-15 87.0 98 42.9
CSS0021614 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 8.7e-14 82.8 54 70.4
PGR142G0681 Punica granatum HOM05D004498 ORTHO05D005300 1.9e-13 81.6 125 45.6
CSS0021260 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 2.8e-12 77.8 55 70.9
Nitab4.5_0003647g0090 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.5e-10 72.0 48 68.8
Cfa025118 Carpinus fangiana HOM05D004498 ORTHO05D005300 1.3e-06 58.9 189 28.0


User provided reference genes

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